CLMP (CXADR like membrane protein) - Rat Genome Database

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Gene: CLMP (CXADR like membrane protein) Pan paniscus
Analyze
Symbol: CLMP
Name: CXADR like membrane protein
RGD ID: 11866937
Description: INVOLVED IN postsynaptic modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog); genetic disease (ortholog); FOUND IN postsynaptic membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29123,771,000 - 123,892,154 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111124,874,977 - 124,997,290 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011117,902,792 - 118,023,936 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111121,824,389 - 121,942,055 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11121,824,398 - 121,942,055 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CLMP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29123,771,000 - 123,892,154 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111124,874,977 - 124,997,290 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011117,902,792 - 118,023,936 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111121,824,389 - 121,942,055 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11121,824,398 - 121,942,055 (-)Ensemblpanpan1.1panPan2
CLMP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811123,069,872 - 123,195,248 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11123,069,872 - 123,195,248 (-)EnsemblGRCh38hg38GRCh38
GRCh3711122,940,580 - 123,065,956 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611122,448,230 - 122,571,217 (-)NCBINCBI36Build 36hg18NCBI36
Celera11120,102,350 - 120,225,315 (-)NCBICelera
Cytogenetic Map11q24.1NCBI
HuRef11118,884,692 - 119,007,600 (-)NCBIHuRef
CHM1_111122,829,032 - 122,951,924 (-)NCBICHM1_1
T2T-CHM13v2.011123,098,457 - 123,223,763 (-)NCBIT2T-CHM13v2.0
Clmp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39940,596,975 - 40,696,849 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl940,597,258 - 40,696,615 (+)EnsemblGRCm39 Ensembl
GRCm38940,682,123 - 40,785,553 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl940,685,962 - 40,785,319 (+)EnsemblGRCm38mm10GRCm38
MGSCv37940,494,047 - 40,592,129 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36940,437,033 - 40,535,115 (+)NCBIMGSCv36mm8
Celera937,919,429 - 38,017,479 (+)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map921.42NCBI
Clmp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8849,957,639 - 50,065,959 (+)NCBIGRCr8
mRatBN7.2841,060,527 - 41,168,841 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl841,060,799 - 41,168,838 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx846,559,569 - 46,668,056 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0844,838,179 - 44,946,657 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0842,705,779 - 42,814,242 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0844,846,685 - 44,975,460 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl844,847,157 - 44,975,457 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0846,020,805 - 46,148,061 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4843,661,696 - 43,769,479 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1843,670,461 - 43,778,242 (+)NCBI
Celera840,662,471 - 40,768,359 (+)NCBICelera
Cytogenetic Map8q22NCBI
Clmp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541223,876,003 - 23,970,119 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541223,876,003 - 23,984,603 (-)NCBIChiLan1.0ChiLan1.0
CLMP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1511,255,054 - 11,289,578 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl511,267,038 - 11,286,682 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha511,246,302 - 11,345,522 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0511,141,243 - 11,240,485 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl511,141,239 - 11,240,456 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1511,244,300 - 11,343,931 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0511,175,179 - 11,276,711 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0511,221,449 - 11,320,980 (+)NCBIUU_Cfam_GSD_1.0
Clmp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947104,667,596 - 104,763,997 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365427,587,272 - 7,685,144 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365427,591,223 - 7,685,040 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLMP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl949,989,767 - 50,093,417 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1949,989,967 - 50,094,223 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2955,394,444 - 55,402,185 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLMP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11114,461,052 - 114,575,178 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1114,462,833 - 114,575,154 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604311,630,291 - 11,668,135 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clmp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248801,965,476 - 2,059,420 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248801,965,264 - 2,063,241 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034933919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000036185   ⟹   ENSPPAP00000013513
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11121,824,398 - 121,942,055 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000036188   ⟹   ENSPPAP00000013516
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11121,825,547 - 121,849,929 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000036190   ⟹   ENSPPAP00000013518
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11121,825,547 - 121,849,257 (-)Ensembl
RefSeq Acc Id: XM_034933919   ⟹   XP_034789810
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v29123,771,000 - 123,892,154 (-)NCBI
NHGRI_mPanPan111124,874,977 - 124,996,866 (-)NCBI
Mhudiblu_PPA_v011117,902,792 - 118,023,936 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034789810 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000013513.1
  ENSPPAP00000013516.1
  ENSPPAP00000013518.1
Reference Protein Sequences
RefSeq Acc Id: XP_034789810   ⟸   XM_034933919
- UniProtKB: A0A2R9A8A5 (UniProtKB/TrEMBL),   A0A2R9ADC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000013518   ⟸   ENSPPAT00000036190
RefSeq Acc Id: ENSPPAP00000013516   ⟸   ENSPPAT00000036188
RefSeq Acc Id: ENSPPAP00000013513   ⟸   ENSPPAT00000036185
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000029934 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000036185.1 UniProtKB/TrEMBL
  ENSPPAT00000036188.1 UniProtKB/TrEMBL
  ENSPPAT00000036190.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CLMP UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
NCBI Gene CLMP ENTREZGENE
PANTHER CXADR-LIKE MEMBRANE PROTEIN UniProtKB/TrEMBL
  PTHR44783 UniProtKB/TrEMBL
Pfam Ig_2 UniProtKB/TrEMBL
  V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A2R9A8A5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A8B1_PANPA UniProtKB/TrEMBL
  A0A2R9ADC3 ENTREZGENE, UniProtKB/TrEMBL