Zkscan1 (zinc finger with KRAB and SCAN domains 1)

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Gene: Zkscan1 (zinc finger with KRAB and SCAN domains 1) Ictidomys tridecemlineatus

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Symbol:

Zkscan1 (Ensembl: ZSCAN21)

Name:

zinc finger with KRAB and SCAN domains 1 (Ensembl:zinc finger and SCAN domain containing 21)

RGD ID:

12515002

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN male meiosis I (inferred); positive regulation of DNA-templated transcription (inferred); positive regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH intellectual disability (ortholog); pleomorphic xanthoastrocytoma (ortholog); prostate cancer (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC101968831; zinc finger and SCAN domain containing 21; zinc finger and SCAN domain-containing protein 21; zinc finger protein with KRAB and SCAN domains 1; zinc finger with KRAB and SCAN domains 1, transcript variant X1; zinc finger with KRAB and SCAN domains 1, transcript variant X2; zinc finger with KRAB and SCAN domains 1, transcript variant X3; zinc finger with KRAB and SCAN domains 1, transcript variant X4; Zscan21

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	133,844,331 - 133,885,668 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936543	180,662 - 192,238 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0 Ensembl	NW_004936543	150,850 - 165,282 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936543	150,845 - 192,197 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

pleomorphic xanthoastrocytoma (ISO)

prostate cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

male meiosis I (IEA)

positive regulation of DNA-templated transcription (IEA)

positive regulation of transcription by RNA polymerase II (IEA)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA)

spermatogenesis (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Zkscan1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	133,844,331 - 133,885,668 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936543	180,662 - 192,238 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0 Ensembl	NW_004936543	150,850 - 165,282 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936543	150,845 - 192,197 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZKSCAN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	100,015,596 - 100,045,374 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	100,015,572 - 100,041,689 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	99,613,219 - 99,642,997 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	99,451,155 - 99,473,339 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	99,257,869 - 99,280,054	NCBI
Celera	7	94,347,766 - 94,369,948 (+)	NCBI		Celera
Cytogenetic Map	7	q22.1	NCBI
HuRef	7	94,248,895 - 94,270,995 (+)	NCBI		HuRef
CHM1_1	7	99,543,395 - 99,565,575 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	101,255,101 - 101,284,872 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	98,973,342 - 98,995,525 (+)	NCBI

Zkscan1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	138,083,312 - 138,106,084 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	138,083,346 - 138,106,084 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	138,085,050 - 138,107,822 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	138,085,084 - 138,107,822 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	138,526,312 - 138,549,050 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	138,314,872 - 138,337,610 (+)	NCBI		MGSCv36	mm8
Celera	5	135,064,847 - 135,087,824 (+)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	76.95	NCBI

Zkscan1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	22,080,319 - 22,101,389 (+)	NCBI		GRCr8
mRatBN7.2	12	16,966,287 - 16,987,680 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	16,966,654 - 16,983,865 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	17,789,870 - 17,806,147 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	18,413,615 - 18,429,892 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	17,467,019 - 17,483,296 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	19,231,092 - 19,247,393 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	19,231,092 - 19,247,387 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	21,289,534 - 21,310,622 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	17,530,383 - 17,546,785 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	12	18,897,020 - 18,913,306 (+)	NCBI		Celera
Cytogenetic Map	12	q11	NCBI

Zkscan1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955573	830,342 - 836,216 (-)	Ensembl	ChiLan1.0
ChiLan1.0 Ensembl	NW_004955573	854,380 - 869,870 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955573	830,897 - 869,857 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZKSCAN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	117,934,934 - 117,969,044 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	166,199,568 - 166,233,676 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	92,050,741 - 92,080,554 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	105,484,170 - 105,514,778 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	105,484,185 - 105,502,895 (+)	Ensembl	panpan1.1		panPan2

ZKSCAN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	7,920,675 - 7,942,498 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	7,920,640 - 7,959,462 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	7,175,404 - 7,194,287 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZKSCAN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	13,013,603 - 13,064,154 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	13,044,616 - 13,056,332 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666070	3,207,048 - 3,237,799 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005328431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005328432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013360068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021728535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000010170 ⟹ ENSSTOP00000009123

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936543	150,850 - 165,282 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000030025 ⟹ ENSSTOP00000015256

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936543	180,662 - 192,238 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000040399 ⟹ ENSSTOP00000027452

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936543	150,850 - 165,210 (+)	Ensembl

RefSeq Acc Id:

XM_005328431 ⟹ XP_005328488

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	133,844,331 - 133,855,242 (-)	NCBI
SpeTri2.0	NW_004936543	181,359 - 192,197 (+)	NCBI

Sequence:

show sequence

ACTTCCGGCTGCGCCGTCCCGCGGCCCGCCGAGCGGTCTCCCCGCGCCCTGAGCGGCTGAGACT
CACGGTTTAACGTGTGGCCCTAAGAAACCAGAAACCCAAAAGAACCAAAACTCCTGCTCCACAA
AGCCTGCCCTAGAGAAGCCATTTCTGGAGTCTGTATGATGACCAAGGTGGTGGGCATGGCCACA
GTTCTGGGCCCCAGGCCCCCTCAGGATCAGGTGGGGCCTGTGATTGTGAAAGTCGAGGATGAAG
AAGAGAAAGGGAAGTGCCTTCCCAGCCTGGAGATGTTCCGTCAACGCTTTAGGCAGTTTGGGTA
CCATGACACCCCTGGGCCCCGGGAGGCCCTGAGCCAGCTCAGGGTGCTCTGCTGTGAGTGGCTG
AGGCCGGAGATCCATACAAAGGAGCAGATCCTGGAGTTGCTGGTGCTGGAGCAGTTCCTGACCA
TCCTGCCCCAGGAACTTCAGGCCTGGGTGCAGGACCATTGCCCAGAGAGTGCCGAAGAGGCCGT
CACTCTCCTGGAAGATCTGGAGCGAGAACTGGATGAACCAGCACTGCAGGTTTCAACTCCAAAT
GAACAGAAACAAGTGTGGGAGAAGACATCATCTTCAGGAAGTGCCAAGGCATCCCTGAGCAGCA
TGCAGACACAGTCTGTGGAGACCAGTCCCAAGTATGAATCCTGGGGGCCTCTGTATATCCAAGA
GACTGGTGAGGAGCAGGATTACACTCAGGATCCAAGAAAAAGTCAAGACTATAAACTGGATCCC
CATAATGAGGAATCAGCAGATGAGCAGAAAAGTTCTGAAGAAGAGTCTCATGCAGATGGACTCA
AAGGGGATATCATTCCTGTGATTGTTGCCAATAAGTGTGGAGCCAGGTCAGAAAGGCAGTGGGG
GAACCTTGGAAAGGAAAGAGGAGCAAAAACCCCTCTTCAAGACACAGGTTCCAAGAAAGGGGCA
GAATCCGTACACACTAAACCCACCCCAGGAGAGAGACGTTACATATGTGCCGAGTGTGGGAAAG
CCTTTAGTAATAGCTCGAATCTTACCAAACACCGGAGAACGCACACTGGGGAGAAACCTTATGT
GTGCACCAAGTGTGGGAAGGCTTTCAGCCATAGCTCAAACCTTACCCTCCATTACAGAACACAC
CTGGTGGAGCGGCCCTATGACTGTAAGTGTGGAAAAGCCTTTGGGCAGAGCTCAGACCTCCTTA
AGCATCAGAGAATGCACACGGAAGAGGCGCCCTATCAGTGTAAAGATTGTGGAAAGGCTTTCAG
TGGTAAAGGCAGCCTCATTCGACACTATCGCATCCACACTGGGGAGAAGCCCTATCAGTGTAAT
GAGTGTGGAAAGAGCTTTAGCCAGCACGCAGGTCTCAGTTCACATCAGCGCCTCCACACTGGAG
AGAAGCCCTATAAATGTAAGGAGTGTGGGAAAGCCTTCAACCACAGCTCAAATTTTAATAAACA
TCATAGAATCCACACTGGGGAAAAGCCCTATTGGTGTAATCATTGTGGAAAAACCTTCTGTAGC
AAGTCAAATCTTTCTAAACATCAAAGAGTCCACACTGGAGAGGGAGAAGTACTATAATTGTCAA
GTATCCCTCTTTCATTATTGTTTTCCTAAACTTTAGAACGTAAATGGTAGGGAGAAGCCCGTGA
TGCAGTAAACTCTGTTGATAGATTTTGTTCCACCCACCATCAGGGATGCCTGTGGAGTGACAGC
TCCACAGCACTCAAAGGCAGGAGGTCCCCTCCCCATACTTCAGGACCCAGCAAACCATGCCAGC
ATTGCCTTCTGCATAAACTGATGTATATCCAGTATAATTAAGAAATATTAAAACTGTTTAACCT
TTCAATGTATATTCCAGAGTTATAACTTGTGAAGAATTGATAACACTGAACACAGTTTAATTGA
ATTCAGAATAAACATGTAACATCA

hide sequence

RefSeq Acc Id:

XM_005328432 ⟹ XP_005328489

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	133,865,062 - 133,885,668 (-)	NCBI
SpeTri2.0	NW_004936543	150,845 - 171,468 (+)	NCBI

Sequence:

show sequence

GCGCGGTCCCGGAAGGCGAGGTGCTGACATACTTCCGGCCTTTGTGACTCATTGTGTCTGTGTG
GAGGCGTCGGGAGGGCCTGGGTCCGTGTGCGGTGCCCTTCGGCCGGCCTGAGCCCCAGAGTCAG
CTCCCCTTTCTCGCCCAGCGCCCCCAGGCCGCTCCCGGGGCACACGGAATAGTACAGAAACAAA
TATAAAGCATCTTCTAGGACAGAAAAGCCAGCACAGACCCGGTTTTCATCACGCCAGTTCCCTG
CGCCTGAATGATGACTGCTGAATCAAGGGAAGCAACAGGTCTGTCCCCGCAGGCTGCACAGGAG
AAGGATGGGATTGTTATAGTGAAGGTAGAAGAGGAAGATGAAGACGATCACATGTGGGGGCAAG
ATTCCAATCTGCAGGAGACACCTCCTCCTGACCCAGAGATATTCCGCCAGCGATTCAGGCGGTT
TTGTTACCAGAACACTTTTGGGCCTCGAGAAGCTCTAAGTCGACTAAAAGAACTTTGTCATCAG
TGGCTGCGACCAGAAATTAACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCC
TTTCCATTCTGCCTAAGGAGCTTCAAGTATGGCTGCAGGAGTACAGACCCGATAGTGGAGAGGA
GGCTGTGACCCTTCTGGAAGACTTGGAGCTTGATCTGTCAGGACAGCAGGTCCCAGGTCAAGTT
CATGGGCCTGAGATGCTTGCCAGAGGGATGGTGCCTCTGGATCCAGTTCAGGAGTCCTCAAGCT
TTGACCTTCATCATGAGGCTTCCCAGTCCCATTTCAAGCATTCATCACGGAAGCCCCGACTCTT
GCAGTCCCGAGCTCTCCCTGCCACTCACGTTCCTGCCCCTCATCACGAGGGGAGTCCCAGAGAC
CAGGCGATGGCATCTGCACTATTGACAGCAGATTCCCAGGCAATGGTGAAGATCGAGGACATGG
CCGTGTCCCTCATCCTGGAGGAATGGGGATGTCAGAACCTGGCTCGGAGGAATCTCAATAGGGA
CAGCAGGCAGGAGAATTATGGGAACGTGTTTTCCCAGGGTTGTGAAACCAGAAATGAGAACAAG
GAGTCGACCTCAAAAGCTGAAGTCACAGAAGACTCAGCATCACATGGGGAGAAAGCAGGAAGAT
TTCAGAAAGAGTTTGGAGAGAAACGCGAACATCAGGGCAGAGTAGTAGAAAGGCAGCAGAGAAA
CCCTGAGGAGAAAACTGGAAAAGAGAAGAAAGAGTCAGGTCCAACTACAGCCAGGGAAAAAAAA
CCTACCACGGGGGAGAGAGGTCCGAGGGAGAAGGGAAAAGGGCTGGGAAGAAGCTTCAGTCTGA
GTTCAAACTTTAATACCCCTGAAGAGGTTCCAACAGGAGCAAAGTCTCACAGATGTGATGAATG
TGGTAAATGCTTCACAAGAAGTTCAAGCCTTATCCGCCATAAAATCATCCACACTGGAGAGAAG
CCCTATGAATGTAGTGAGTGTGGGAAAGCCTTCAGTCTCAACTCAAACCTTGTCCTGCATCAGC
GAATCCACACAGGAGAGAAGCCTCATGAATGTAACGAGTGCGGCAAGGCCTTTAGTCACAGCTC
GAATCTCATTCTGCACCAGCGCATCCACTCTGGAGAGAAGCCCTATGAATGTAACGAGTGTGGG
AAGGCCTTCAGCCAGAGCTCAGACCTCACCAAGCACCAGAGGATCCACACAGGGGAAAAACCCT
ATGAATGTAGTGAGTGTGGGAAAGCTTTCAACCGAAACTCGTACCTTATTTTGCATCGGAGAAT
CCACACCCGAGAAAAGCCCTACAAGTGTACCAAGTGTGGCAAGGCCTTCACCCGAAGCTCAACC
CTCACTCTGCATCACAGAATCCATGCCAGAGAGCGAGCCTTGGAGTATAGCCCAGCCTCCCTGG
ATGCATTTGGAGCATTTCTCAAAAGTTGTGTGTAAAGCAAGAATTTGTCATCAAGCCATTTCCC
CCTTTTGTTTCTAAAATTATTTCAGAAATGTGTGCCCATTGAGGGGAAAAAAACAGCCTCAACA
GATTTTTTTCTTTTTTTAATTATGATTAAGGATCCTTAGAGTTACATCAGCAGTGTTCTGCCTT
TGTGTTGTCTGTGGGCAGGTAATTCTTCCACACAGCCCCTGCAGGGAAAACTGGTCAGATGGGT
AATCCATACAGTATTTCCACATAAGATAAAAGCACACACGCAGGAAAACGTCAAGCTTTTCAGT
AATGAGGATACCTTTAAGGAGCTCTTTGAATCGCAGCAACCACAGCATAAATTGAAAGAACAAG
ATTGGCTCTGTGAATATGCTTCTGAAGTTAAGAAGCCACTTGCTGCAAACAAGCCCTACCTGGC
CAATATCTTGCTTATTTCTCAAAAAAGAGAGAGTTAAAACAAAAACTACATGGGGACATGCTGC
TGCTCAAGCTAGTTATATATCCCATAAGTTATATAGCTGATCACTGGTAGCCTACCAAAGCTAT
AGAAATCTAGGACTGTGCTGATCAGTATCAAACCAAAGATTTCTATCTCTTCCTGAAAGAGAGG
GTACGTGCACCAGTCTACAGTTCCAAAGGACTGCAACAAATGTAGATGGTTCTATCCTCATCAC
TGAGATCAGTTCTCCTGAAACAGCAACAACAATTCAAAACACTTCTCTCCCTTCTTGAAGTCCC
TAAAGCACTCTAGCACTCCTAAATGCATTTCTCCACAAATTAGCACTTGATCATATACTGACTT
TTAATCCTTCATTGTTTCATATATGGAAGTTTTTATTCATCCCCCAAAAGAGATGCTTCGGTTG
TCAAGAGATATAGTTATGTTCCTGACAGCCCGGCACTGTACCTAGTGCTGAACCCATAAAGAGA
CACTCCTTATATCCTATATCTGACTTCTAACAGGACTTTCATATTTATGATAAAGCCCTGTGAA
TCATGAGTACCTGAAATATGGTAGCCTGGCCCAACTTTGAAAGAGGACCTTCACAGCCACACGG
CATGCTAAGCCCTCTAGGGCCAATGCTAATTTTGTCCTAAACATAAACGAAGGCACTGATTAGC
TGCCTGTATAGACTCTTTCTAAACATGGATTGGTGAATAAATACTACGGAATGTCAGAAATTTA
CTACATTGATACCATCTTAAGGGAAATGTGAACACTGACTAAGGTCATTTTTTGACATCTTTCC
ATGGCAAAGATCTTAGCCAGAATTCTCTTCAGTCGGCTGCTGAACAATATGATGATTTAGGCAC
TTTCTGAATTGTTTGTAACTTAAGATATTATAGTTCAGAAGATGTGTTTTGTTGCTTTTCAGAA
AAAGAAAAGGGAGCATTTTTTTTCCACACTTTTCCAGAAACTTTCAAAAAGAACTTACCATCAT
TAGCAGGCAATTATGAAAGGTAGTTCGTTGCTCTGAGCAGTTCACTGATAGAATATCAGAAATG
GTTGATTGTGTCATAGTCATAGTGCACGGTATCTTTTTTTGTTACTCATCACTAAAGACTGAAG
TGAGGTTATGGAATTATCTCCATTTGTGCAGCTCAAGTCAGGTGGCTCTCTAGAAGCTGCTGGT
GGAGACTGTTTCACATATACAGAGGACCCAAGTATCATGGACTGTGACGGTATCAAGGGTTTGG
TTAGAGAGGGCTCTGTTCATGAGATGAGAGCTTTCAGATGGCCATGGATAGCCCTGCAGAAAGC
TAGAAACCGGCTAAAAACAAATCTGAAGACCATCAGCATGAACACCCTGTAACAGGAAAACCCC
ATTTCAATTTGAGATGTTCCCTCAAGAAACAATAAAACTAGCATTTATCAGTCATTTGCTGACC
AGCAGCAAAAATCCACAAGATAGCATGGTGGAACCAATGAGATGGAGGCATGCATGGGCTCAGC
TCCAGACCACACTAGAATTCTGCACAGCATTCATTCTTGGTCTCTCTTTGGCTTTCTTACTTGG
ACTAACCGCAGCTTCTCTGTAGCTTCTAAGCAGTTTCTTCAGTGTTGACTGGGGAGACCACGTA
AAATAAGTCAGCCAGTTACCAGAATATTTCTATCCATCCAGCTAAAAAAAATGATATATTCTAG
AAGAGTATATCTAATTCACTTTCTGTAGAGAAATGAAAGTAGAAATTCATCAAGAATTTTCTTC
AAAGAATGAGCCACAGTGGTGGTTGCCTAGAAAATTACTGGTGCTTTTGAGAGGACTTTTGTCC
CCTGAAAGCAACAAAATGAAGTGCACAATTCCAGGCATCCATTCCAAACTCTCTGCCTTTGTTC
TTAAGAGGGAAAGGACTTTGGTCAGTTTCACATTGGCTTCGCCCCCACTTCCCCCACTACATGC
TGACAAAATTCAGCTGTCATTTTGGGATTTTGTTTATAAGTGAAATTTAAATATGACCTGTGCC
CCTTCATTTGGCTCCCATTTTATTGGGATGTTCTGCTGGCTGATGGATAGCTACTGGGGTTGCT
TCAGATCTTTGGCAGATGCACTCTTAGAGGCAGCAATTTGAATGCTTGTTTCCCGAGAACAGGC
TATAACTAGTTATTAAAACCATTTGCATTGCATTCATTTATCAGATGCTCAGTGCAGAGGTGTC
ATTGGGCCATGGTCAAAAACTCTGGCAACATCTAATTAGTGCTCAGGATAGACATTCAAAAGTT
CTTTACTGGGTGAAGTCTGTTAACAGTTGGTACACTATAGCTGACCATCAGCATGCTAGTTGAC
CTAATGGGACTTTTTTGAAGTTTTTAAAGATACACCTTAACCTTGCCAGGAAGAGAAGTAAAAT
TATTCAGGTTGTGGGTATTTGTTTCTACTCCAGCCTGACAAGCAAGGCTAAACTTGAGAATATA
GATATGTGAGACCTTTTGGTATTTAAGGCACTTAATTAAAATTAAAGTCATAAAGGTAAAACTA
CTAAATGTGTGGAGAGAGTGACATGTTTGATATGTAGGACGGTTCACATATATGTCAGAGAATT
TATTCCAGAGAGGAACCTCTTGAATGTGATAAGTATGGCAAAGCCTTTAATCACATCTCAGCCC
TTAGCTCAGAAAGCTTACACTGTAAATAAACTTAATAACATTATATGTGAGGAAAATGTTCATG
TATAGCACTCATTGCTTTGGACAGAAAATGAATTCCCTCGGTATGTTCTAGTCATGCGATAAAT
TACAAAACACGGCAGAAGGAGCTCGGTCTTAACTCCACAGGATCCACAGAAGAAAACAATGTGG
GGAAATGCGAAAGAAATAGCAAAATATACAACTTTAAAAATTGTTAATGTTGGGTACTTCTATA
CATTTTGTATGGCCATAATGTCACTGTGTTTTGTACCTGGACCCCTATTATTTTGTACATTCCC
TTGTAAACAGATAATGTATTTTAATTTGACAGAGCACATCACTTCAAAAGAGAGAGGTTTTGAA
GTGAGTAGTGAAGAGATTGATGTGGTAATGGACAAAAAGTCAGTTCACAGAACTGAGAAGTGGA
AGGATGAAGGGGAAAAGACCTTCATTGTTTGGTGCTTATTGAATCGAGAGAAGAGATCAGTAAA
TTCATGAGGAGAGACAGGCTAATAGGGCACTAAAATGAAACAACTCCTCTAAATATCTGCAACT
TATCAAAAGAGTTTTCAAAACTGGGAAGTTGACCTCTGAGCTGCTGGGTCACTACTGCAAGCAG
AGGGAGTAGATGGATTTGAGCTTGTTGGGGGAGGAATTGAATCAGTGAGTTGAGAGTAAGACAT
ACTGCAGTGGCCAGTGGGACTAATAATCTGACCAGATTCTGTAAAACCACAATCTTGCCTCCCC
GCTAACTTTTAAATCTTTATGCTTAAAAATTGGGGATGTGAAAACACCAAGATGGGCAGTTTCC
TGGGAAATAAGTTGACACTGCAGGAGGGTTGTCTGATGAGTCTCAAGAAGCATTTTGCAAGATT
CCCTTGGGCTGTGCTCCTGTGTACCTTCCTTGTCCCCATGCTTCCCTGGTTTGACTGTTAGGAG
AGAGGGTTTGTGAAGATTCATAGTTGTAAACATTGTTCTGTTTTGTTTTTTGATCTAGAATTAG
TCACCTTCCAGGTAGGCATGCTGGTCCATTTATCCAAAGCCAACTAAACCAGTCCATCCTGACA
TCCTCATGAAATACTGTGTGAATTAGAGTAAAAGTATTGAAATACAGCCCAATAGTGACAGCAA
TACTTGCCCCAGGAGCCCTATTTTTGTGCATCCCACTCTGAGTAACTTCTCAGAAATATTTGAG
GGTGCTGGGGTTTCCCATTGGGGAAACTAAATCACTGCAGATTAAGTGAAACAGACTCAGAAAA
GCAAATTAATTGGTATAAATAAGTTGTTCTATCATAGAAATTAGGGTAGATGTTCATTTCAACT
ACTGGAGAATTTAATATAAAGCATTATTGTTTGAAAAGTTTTCCTAACATAGATTTAGTTTTCA
TTTTTAAAATGGACACTCTACCTTTAAAAGCTGTTACTTATTTTGCTATTCAGATTAATTTTTT
ATTAAATCCAAAAATGAATTTATTTGTTTTGCTTTTCAAAGCTTTGTAAAACAAACTTGAAATT
AAAGGGAGGTAAGCCATCTCCTGTTCTGCAGGTCAAAAGTTTGGGAAATAGTTTGGCATCCCAT
AATATAAGATGTATTAACATGAGAACTTGGCTTCATACTGTCTGGTTCTCTTTACTAGAGGACA
CCACCAACCCCCTGCTTTTCTCTGTTATCCTAAACGGTAGAAGAAAGTAGTCATTAGGTAATCT
CTAAACCATGGTTTGCTGTGATTTTAATAGTTCTTAATCGTGAAGATGCTCACACCTCCATTTA
CTAAAAGAATCATGATTCACTTCAGCTTACATAGTAATCGGCAAAGTTAATTGGCTTTTGAATT
AAATTTTCTCCCCTCAACAAGCATTCAGTAAGCAGTGAGGCCATTTGCTTGGTGATGCAAAGAA
TGAGGTCTGTGTGGTTGAAAGAGGCAGCGCTGGTCTGGGGCTGGGGCTCAGTGGTAGAGCGCTT
GCCTAGCATGTGTGAGGCACTCAGCACCGCATATAAATAAATGAATAAAATAAATGTCTATCAA
CAACTAAATATATATATGAAAAAAAAAGCGGTGCTGACACTTGGATTTTATTCCAGTTTCAGAT
TTGGCTTTTAAGTTCCTTTGGTCCAAGGAAGGAACCAGGCATCTGTAGTCACTCTCAATATTGT
GCAGTCTCCTGACAAGGTTGGGTATGTTAGCAAGGAGAATTATACCAGCTGGAAAAGGGAGAGA
AAAACCTGGGAATGTGCTGGGCTTCCTGCTCCCTTGCCTTTCTCCTTGCCTCACCTGGGTAACA
GCATTCAGCTGCTGCTTGAAGTTTCTAGTCTGCCCTAGCAAGGATAAAGCATGTTAGATGTAGA
GGTGCTTCTGCTGGTAGCAGGGGTATTATTTGAAAAGATATATGGGGGTGGGGGGGCGGGAGGA
AGCAGGTTGTGATTATGCAGGAAAATCCTAAAAAGTGTATGAGTGTAGGGGTAAGGGGTGGGTT
GTGCAAGCAAGATCGTAATTATTTTAAAATAAGCATATGTATTTTTATTAACTTTTAGTTAAAT
ATAGATTATTACAACCAGGTCAACATAAGGCTAAATCTATATATAGAGCTAACTCAGGCATTGT
CTTATTTGTAGACTAGATAAAACAACCTGTCCTGTCCTGTCCTGTCAGTTCCCAGCTTCTTTTA
GAATAAATTTAGACCAAAAGAAGAAACTTGTCTTTGTATACCCGCAGAATTAAGTTATTGCTGT
TCAAAATTGGATTTTTCATTTTAACAGTCTCTGAAGAGTCCAGGTGCTTAGTAGATGTCTAATA
AATGATTTTAAAATTGAATTTGTTTGCTTACAATCCTCATTAACATTTCCAGAAAGGCTTCTTT
CACTAAATAATGACATCTTAGAGGAAAGTGGTTTGTTTAAGAACTAGGGAACTCCTTCACTAAA
ATAGTTTGAAACCTTGATTGAGGTATAAAATTTCAATCATAAGAGAAATGGCAGCAAAAATTCA
TAGTGGTCCATTTTAGGAGGCCAGTGGTATCTGATAAATGTTAGAGTAGTGAAGTTGGGAAAGG
AAATTGTGGGGATTTGTAATATTCTCTTTGTTGTTTCTCTTCTGGGTCATGGTAAAAACAATAA
ATTATCATCTCTAGGTGGCAA

hide sequence

RefSeq Acc Id:

XM_013360068 ⟹ XP_013215522

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	133,844,331 - 133,885,668 (-)	NCBI
SpeTri2.0	NW_004936543	150,845 - 192,197 (+)	NCBI

Sequence:

show sequence

GCGCGGTCCCGGAAGGCGAGGTGCTGACATACTTCCGGCCTTTGTGACTCATTGTGTCTGTGTG
GAGGCGTCGGGAGGGCCTGGGTCCGTGTGCGGTGCCCTTCGGCCGGCCTGAGCCCCAGAGTCAG
CTCCCCTTTCTCGCCCAGCGCCCCCAGGCCGCTCCCGGGGCACACGGAATAGTACAGAAACAAA
TATAAAGCATCTTCTAGGACAGAAAAGCCAGCACAGACCCGGTTTTCATCACGCCAGTTCCCTG
CGCCTGAATGATGACTGCTGAATCAAGGGAAGCAACAGGTCTGTCCCCGCAGGCTGCACAGGAG
AAGGATGGGATTGTTATAGTGAAGGTAGAAGAGGAAGATGAAGACGATCACATGTGGGGGCAAG
ATTCCAATCTGCAGGAGACACCTCCTCCTGACCCAGAGATATTCCGCCAGCGATTCAGGCGGTT
TTGTTACCAGAACACTTTTGGGCCTCGAGAAGCTCTAAGTCGACTAAAAGAACTTTGTCATCAG
TGGCTGCGACCAGAAATTAACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCC
TTTCCATTCTGCCTAAGGAGCTTCAAGTATGGCTGCAGGAGTACAGACCCGATAGTGGAGAGGA
GGCTGTGACCCTTCTGGAAGACTTGGAGCTTGATCTGTCAGGACAGCAGGTCCCAGGTCAAGTT
CATGGGCCTGAGATGCTTGCCAGAGGGATGGTGCCTCTGGATCCAGTTCAGGAGTCCTCAAGCT
TTGACCTTCATCATGAGGCTTCCCAGTCCCATTTCAAGCATTCATCACGGAAGCCCCGACTCTT
GCAGTCCCGAGCTCTCCCTGCCACTCACGTTCCTGCCCCTCATCACGAGGGGAGTCCCAGAGAC
CAGGCGATGGCATCTGCACTATTGACAGCAGATTCCCAGGCAATGGTGAAGATCGAGGACATGG
CCGTGTCCCTCATCCTGGAGGAATGGGGATGTCAGAACCTGGCTCGGAGGAATCTCAATAGGGA
CAGCAGGCAGGAGAATTATGGGAACGTGTTTTCCCAGGGTTGTGAAACCAGAAATGAGAACAAG
GAGTCGACCTCAAAAGCTGAAGTCACAGAAGACTCAGCATCACATGGGGAGAAAGCAGGAAGAT
TTCAGAAAGAGTTTGGAGAGAAACGCGAACATCAGGGCAGAGTAGTAGAAAGGCAGCAGAGAAA
CCCTGAGGAGAAAACTGGAAAAGAGAAGAAAGAGTCAGGTCCAACTACAGCCAGGGAAAAAAAA
CCTACCACGGGGGAGAGAGGTCCGAGGGAGAAGGGAAAAGGGCTGGGAAGAAGCTTCAGTCTGA
GTTCAAACTTTAATACCCCTGAAGAGGTTCCAACAGGAGCAAAGTCTCACAGATGTGATGAATG
TGGTAAATGCTTCACAAGAAGTTCAAGCCTTATCCGCCATAAAATCATCCACACTGGAGAGAAG
CCCTATGAATGTAGTGAGTGTGGGAAAGCCTTCAGTCTCAACTCAAACCTTGTCCTGCATCAGC
GAATCCACACAGGAGAGAAGCCTCATGAATGTAACGAGTGCGGCAAGGCCTTTAGTCACAGCTC
GAATCTCATTCTGCACCAGCGCATCCACTCTGGAGAGAAGCCCTATGAATGTAACGAGTGTGGG
AAGGCCTTCAGCCAGAGCTCAGACCTCACCAAGCACCAGAGGATCCACACAGGGGAAAAACCCT
ATGAATGTAGTGAGTGTGGGAAAGCTTTCAACCGAAACTCGTACCTTATTTTGCATCGGAGAAT
CCACACCCGAGAAAAGCCCTACAAGTGTACCAAGTGTGGCAAGGCCTTCACCCGAAGCTCAACC
CTCACTCTGCATCACAGAATCCATACTGGAGAGAGACGTTACATATGTGCCGAGTGTGGGAAAG
CCTTTAGTAATAGCTCGAATCTTACCAAACACCGGAGAACGCACACTGGGGAGAAACCTTATGT
GTGCACCAAGTGTGGGAAGGCTTTCAGCCATAGCTCAAACCTTACCCTCCATTACAGAACACAC
CTGGTGGAGCGGCCCTATGACTGTAAGTGTGGAAAAGCCTTTGGGCAGAGCTCAGACCTCCTTA
AGCATCAGAGAATGCACACGGAAGAGGCGCCCTATCAGTGTAAAGATTGTGGAAAGGCTTTCAG
TGGTAAAGGCAGCCTCATTCGACACTATCGCATCCACACTGGGGAGAAGCCCTATCAGTGTAAT
GAGTGTGGAAAGAGCTTTAGCCAGCACGCAGGTCTCAGTTCACATCAGCGCCTCCACACTGGAG
AGAAGCCCTATAAATGTAAGGAGTGTGGGAAAGCCTTCAACCACAGCTCAAATTTTAATAAACA
TCATAGAATCCACACTGGGGAAAAGCCCTATTGGTGTAATCATTGTGGAAAAACCTTCTGTAGC
AAGTCAAATCTTTCTAAACATCAAAGAGTCCACACTGGAGAGGGAGAAGTACTATAATTGTCAA
GTATCCCTCTTTCATTATTGTTTTCCTAAACTTTAGAACGTAAATGGTAGGGAGAAGCCCGTGA
TGCAGTAAACTCTGTTGATAGATTTTGTTCCACCCACCATCAGGGATGCCTGTGGAGTGACAGC
TCCACAGCACTCAAAGGCAGGAGGTCCCCTCCCCATACTTCAGGACCCAGCAAACCATGCCAGC
ATTGCCTTCTGCATAAACTGATGTATATCCAGTATAATTAAGAAATATTAAAACTGTTTAACCT
TTCAATGTATATTCCAGAGTTATAACTTGTGAAGAATTGATAACACTGAACACAGTTTAATTGA
ATTCAGAATAAACATGTAACATCA

hide sequence

RefSeq Acc Id:

XM_021728535 ⟹ XP_021584210

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	133,865,062 - 133,885,668 (-)	NCBI
SpeTri2.0	NW_004936543	150,897 - 171,468 (+)	NCBI

Sequence:

show sequence

TGTGTCTGTGTGGAGGCGTCGGGAGGGCCTGGGTCCGTGTGCGGTGCCCTTCGGCCGGCCTGAG
CCCCAGAGTCAGCTCCCCTTTCTCGCCCAGCGCCCCCAGGCCGCTCCCGGGGCACACGGAATAG
TACAGAAACAAATATAAAGCATCTTCTAGGACAGAAAAGCCAGCACAGACCCGGTTTTCATCAC
GCCAGTTCCCTGCGCCTGAATGATGACTGCTGAATCAAGGGAAGCAACAGGTCTGTCCCCGCAG
GCTGCACAGGAGAAGGATGGGATTGTTATAGTGAAGGTAGAAGAGGAAGATGAAGACGATCACA
TGTGGGGGCAAGATTCCAATCTGCAGGAGACACCTCCTCCTGACCCAGAGATATTCCGCCAGCG
ATTCAGGCGGTTTTGTTACCAGAACACTTTTGGGCCTCGAGAAGCTCTAAGTCGACTAAAAGAA
CTTTGTCATCAGTGGCTGCGACCAGAAATTAACACCAAGGAGCAGATCCTGGAGCTGCTGGTGC
TGGAGCAGTTCCTTTCCATTCTGCCTAAGGAGCTTCAAGTATGGCTGCAGGAGTACAGACCCGA
TAGTGGAGAGGAGGCTGTGACCCTTCTGGAAGACTTGGAGCTTGATCTGTCAGGACAGCAGGTC
CCAGGTCAAGTTCATGGGCCTGAGATGCTTGCCAGAGGGATGGTGCCTCTGGATCCAGTTCAGG
AGTCCTCAAGCTTTGACCTTCATCATGAGGCTTCCCAGTCCCATTTCAAGCATTCATCACGGAA
GCCCCGACTCTTGCAGTCCCGAGGTTGTGAAACCAGAAATGAGAACAAGGAGTCGACCTCAAAA
GCTGAAGTCACAGAAGACTCAGCATCACATGGGGAGAAAGCAGGAAGATTTCAGAAAGAGTTTG
GAGAGAAACGCGAACATCAGGGCAGAGTAGTAGAAAGGCAGCAGAGAAACCCTGAGGAGAAAAC
TGGAAAAGAGAAGAAAGAGTCAGGTCCAACTACAGCCAGGGAAAAAAAACCTACCACGGGGGAG
AGAGGTCCGAGGGAGAAGGGAAAAGGGCTGGGAAGAAGCTTCAGTCTGAGTTCAAACTTTAATA
CCCCTGAAGAGGTTCCAACAGGAGCAAAGTCTCACAGATGTGATGAATGTGGTAAATGCTTCAC
AAGAAGTTCAAGCCTTATCCGCCATAAAATCATCCACACTGGAGAGAAGCCCTATGAATGTAGT
GAGTGTGGGAAAGCCTTCAGTCTCAACTCAAACCTTGTCCTGCATCAGCGAATCCACACAGGAG
AGAAGCCTCATGAATGTAACGAGTGCGGCAAGGCCTTTAGTCACAGCTCGAATCTCATTCTGCA
CCAGCGCATCCACTCTGGAGAGAAGCCCTATGAATGTAACGAGTGTGGGAAGGCCTTCAGCCAG
AGCTCAGACCTCACCAAGCACCAGAGGATCCACACAGGGGAAAAACCCTATGAATGTAGTGAGT
GTGGGAAAGCTTTCAACCGAAACTCGTACCTTATTTTGCATCGGAGAATCCACACCCGAGAAAA
GCCCTACAAGTGTACCAAGTGTGGCAAGGCCTTCACCCGAAGCTCAACCCTCACTCTGCATCAC
AGAATCCATGCCAGAGAGCGAGCCTTGGAGTATAGCCCAGCCTCCCTGGATGCATTTGGAGCAT
TTCTCAAAAGTTGTGTGTAAAGCAAGAATTTGTCATCAAGCCATTTCCCCCTTTTGTTTCTAAA
ATTATTTCAGAAATGTGTGCCCATTGAGGGGAAAAAAACAGCCTCAACAGATTTTTTTCTTTTT
TTAATTATGATTAAGGATCCTTAGAGTTACATCAGCAGTGTTCTGCCTTTGTGTTGTCTGTGGG
CAGGTAATTCTTCCACACAGCCCCTGCAGGGAAAACTGGTCAGATGGGTAATCCATACAGTATT
TCCACATAAGATAAAAGCACACACGCAGGAAAACGTCAAGCTTTTCAGTAATGAGGATACCTTT
AAGGAGCTCTTTGAATCGCAGCAACCACAGCATAAATTGAAAGAACAAGATTGGCTCTGTGAAT
ATGCTTCTGAAGTTAAGAAGCCACTTGCTGCAAACAAGCCCTACCTGGCCAATATCTTGCTTAT
TTCTCAAAAAAGAGAGAGTTAAAACAAAAACTACATGGGGACATGCTGCTGCTCAAGCTAGTTA
TATATCCCATAAGTTATATAGCTGATCACTGGTAGCCTACCAAAGCTATAGAAATCTAGGACTG
TGCTGATCAGTATCAAACCAAAGATTTCTATCTCTTCCTGAAAGAGAGGGTACGTGCACCAGTC
TACAGTTCCAAAGGACTGCAACAAATGTAGATGGTTCTATCCTCATCACTGAGATCAGTTCTCC
TGAAACAGCAACAACAATTCAAAACACTTCTCTCCCTTCTTGAAGTCCCTAAAGCACTCTAGCA
CTCCTAAATGCATTTCTCCACAAATTAGCACTTGATCATATACTGACTTTTAATCCTTCATTGT
TTCATATATGGAAGTTTTTATTCATCCCCCAAAAGAGATGCTTCGGTTGTCAAGAGATATAGTT
ATGTTCCTGACAGCCCGGCACTGTACCTAGTGCTGAACCCATAAAGAGACACTCCTTATATCCT
ATATCTGACTTCTAACAGGACTTTCATATTTATGATAAAGCCCTGTGAATCATGAGTACCTGAA
ATATGGTAGCCTGGCCCAACTTTGAAAGAGGACCTTCACAGCCACACGGCATGCTAAGCCCTCT
AGGGCCAATGCTAATTTTGTCCTAAACATAAACGAAGGCACTGATTAGCTGCCTGTATAGACTC
TTTCTAAACATGGATTGGTGAATAAATACTACGGAATGTCAGAAATTTACTACATTGATACCAT
CTTAAGGGAAATGTGAACACTGACTAAGGTCATTTTTTGACATCTTTCCATGGCAAAGATCTTA
GCCAGAATTCTCTTCAGTCGGCTGCTGAACAATATGATGATTTAGGCACTTTCTGAATTGTTTG
TAACTTAAGATATTATAGTTCAGAAGATGTGTTTTGTTGCTTTTCAGAAAAAGAAAAGGGAGCA
TTTTTTTTCCACACTTTTCCAGAAACTTTCAAAAAGAACTTACCATCATTAGCAGGCAATTATG
AAAGGTAGTTCGTTGCTCTGAGCAGTTCACTGATAGAATATCAGAAATGGTTGATTGTGTCATA
GTCATAGTGCACGGTATCTTTTTTTGTTACTCATCACTAAAGACTGAAGTGAGGTTATGGAATT
ATCTCCATTTGTGCAGCTCAAGTCAGGTGGCTCTCTAGAAGCTGCTGGTGGAGACTGTTTCACA
TATACAGAGGACCCAAGTATCATGGACTGTGACGGTATCAAGGGTTTGGTTAGAGAGGGCTCTG
TTCATGAGATGAGAGCTTTCAGATGGCCATGGATAGCCCTGCAGAAAGCTAGAAACCGGCTAAA
AACAAATCTGAAGACCATCAGCATGAACACCCTGTAACAGGAAAACCCCATTTCAATTTGAGAT
GTTCCCTCAAGAAACAATAAAACTAGCATTTATCAGTCATTTGCTGACCAGCAGCAAAAATCCA
CAAGATAGCATGGTGGAACCAATGAGATGGAGGCATGCATGGGCTCAGCTCCAGACCACACTAG
AATTCTGCACAGCATTCATTCTTGGTCTCTCTTTGGCTTTCTTACTTGGACTAACCGCAGCTTC
TCTGTAGCTTCTAAGCAGTTTCTTCAGTGTTGACTGGGGAGACCACGTAAAATAAGTCAGCCAG
TTACCAGAATATTTCTATCCATCCAGCTAAAAAAAATGATATATTCTAGAAGAGTATATCTAAT
TCACTTTCTGTAGAGAAATGAAAGTAGAAATTCATCAAGAATTTTCTTCAAAGAATGAGCCACA
GTGGTGGTTGCCTAGAAAATTACTGGTGCTTTTGAGAGGACTTTTGTCCCCTGAAAGCAACAAA
ATGAAGTGCACAATTCCAGGCATCCATTCCAAACTCTCTGCCTTTGTTCTTAAGAGGGAAAGGA
CTTTGGTCAGTTTCACATTGGCTTCGCCCCCACTTCCCCCACTACATGCTGACAAAATTCAGCT
GTCATTTTGGGATTTTGTTTATAAGTGAAATTTAAATATGACCTGTGCCCCTTCATTTGGCTCC
CATTTTATTGGGATGTTCTGCTGGCTGATGGATAGCTACTGGGGTTGCTTCAGATCTTTGGCAG
ATGCACTCTTAGAGGCAGCAATTTGAATGCTTGTTTCCCGAGAACAGGCTATAACTAGTTATTA
AAACCATTTGCATTGCATTCATTTATCAGATGCTCAGTGCAGAGGTGTCATTGGGCCATGGTCA
AAAACTCTGGCAACATCTAATTAGTGCTCAGGATAGACATTCAAAAGTTCTTTACTGGGTGAAG
TCTGTTAACAGTTGGTACACTATAGCTGACCATCAGCATGCTAGTTGACCTAATGGGACTTTTT
TGAAGTTTTTAAAGATACACCTTAACCTTGCCAGGAAGAGAAGTAAAATTATTCAGGTTGTGGG
TATTTGTTTCTACTCCAGCCTGACAAGCAAGGCTAAACTTGAGAATATAGATATGTGAGACCTT
TTGGTATTTAAGGCACTTAATTAAAATTAAAGTCATAAAGGTAAAACTACTAAATGTGTGGAGA
GAGTGACATGTTTGATATGTAGGACGGTTCACATATATGTCAGAGAATTTATTCCAGAGAGGAA
CCTCTTGAATGTGATAAGTATGGCAAAGCCTTTAATCACATCTCAGCCCTTAGCTCAGAAAGCT
TACACTGTAAATAAACTTAATAACATTATATGTGAGGAAAATGTTCATGTATAGCACTCATTGC
TTTGGACAGAAAATGAATTCCCTCGGTATGTTCTAGTCATGCGATAAATTACAAAACACGGCAG
AAGGAGCTCGGTCTTAACTCCACAGGATCCACAGAAGAAAACAATGTGGGGAAATGCGAAAGAA
ATAGCAAAATATACAACTTTAAAAATTGTTAATGTTGGGTACTTCTATACATTTTGTATGGCCA
TAATGTCACTGTGTTTTGTACCTGGACCCCTATTATTTTGTACATTCCCTTGTAAACAGATAAT
GTATTTTAATTTGACAGAGCACATCACTTCAAAAGAGAGAGGTTTTGAAGTGAGTAGTGAAGAG
ATTGATGTGGTAATGGACAAAAAGTCAGTTCACAGAACTGAGAAGTGGAAGGATGAAGGGGAAA
AGACCTTCATTGTTTGGTGCTTATTGAATCGAGAGAAGAGATCAGTAAATTCATGAGGAGAGAC
AGGCTAATAGGGCACTAAAATGAAACAACTCCTCTAAATATCTGCAACTTATCAAAAGAGTTTT
CAAAACTGGGAAGTTGACCTCTGAGCTGCTGGGTCACTACTGCAAGCAGAGGGAGTAGATGGAT
TTGAGCTTGTTGGGGGAGGAATTGAATCAGTGAGTTGAGAGTAAGACATACTGCAGTGGCCAGT
GGGACTAATAATCTGACCAGATTCTGTAAAACCACAATCTTGCCTCCCCGCTAACTTTTAAATC
TTTATGCTTAAAAATTGGGGATGTGAAAACACCAAGATGGGCAGTTTCCTGGGAAATAAGTTGA
CACTGCAGGAGGGTTGTCTGATGAGTCTCAAGAAGCATTTTGCAAGATTCCCTTGGGCTGTGCT
CCTGTGTACCTTCCTTGTCCCCATGCTTCCCTGGTTTGACTGTTAGGAGAGAGGGTTTGTGAAG
ATTCATAGTTGTAAACATTGTTCTGTTTTGTTTTTTGATCTAGAATTAGTCACCTTCCAGGTAG
GCATGCTGGTCCATTTATCCAAAGCCAACTAAACCAGTCCATCCTGACATCCTCATGAAATACT
GTGTGAATTAGAGTAAAAGTATTGAAATACAGCCCAATAGTGACAGCAATACTTGCCCCAGGAG
CCCTATTTTTGTGCATCCCACTCTGAGTAACTTCTCAGAAATATTTGAGGGTGCTGGGGTTTCC
CATTGGGGAAACTAAATCACTGCAGATTAAGTGAAACAGACTCAGAAAAGCAAATTAATTGGTA
TAAATAAGTTGTTCTATCATAGAAATTAGGGTAGATGTTCATTTCAACTACTGGAGAATTTAAT
ATAAAGCATTATTGTTTGAAAAGTTTTCCTAACATAGATTTAGTTTTCATTTTTAAAATGGACA
CTCTACCTTTAAAAGCTGTTACTTATTTTGCTATTCAGATTAATTTTTTATTAAATCCAAAAAT
GAATTTATTTGTTTTGCTTTTCAAAGCTTTGTAAAACAAACTTGAAATTAAAGGGAGGTAAGCC
ATCTCCTGTTCTGCAGGTCAAAAGTTTGGGAAATAGTTTGGCATCCCATAATATAAGATGTATT
AACATGAGAACTTGGCTTCATACTGTCTGGTTCTCTTTACTAGAGGACACCACCAACCCCCTGC
TTTTCTCTGTTATCCTAAACGGTAGAAGAAAGTAGTCATTAGGTAATCTCTAAACCATGGTTTG
CTGTGATTTTAATAGTTCTTAATCGTGAAGATGCTCACACCTCCATTTACTAAAAGAATCATGA
TTCACTTCAGCTTACATAGTAATCGGCAAAGTTAATTGGCTTTTGAATTAAATTTTCTCCCCTC
AACAAGCATTCAGTAAGCAGTGAGGCCATTTGCTTGGTGATGCAAAGAATGAGGTCTGTGTGGT
TGAAAGAGGCAGCGCTGGTCTGGGGCTGGGGCTCAGTGGTAGAGCGCTTGCCTAGCATGTGTGA
GGCACTCAGCACCGCATATAAATAAATGAATAAAATAAATGTCTATCAACAACTAAATATATAT
ATGAAAAAAAAAGCGGTGCTGACACTTGGATTTTATTCCAGTTTCAGATTTGGCTTTTAAGTTC
CTTTGGTCCAAGGAAGGAACCAGGCATCTGTAGTCACTCTCAATATTGTGCAGTCTCCTGACAA
GGTTGGGTATGTTAGCAAGGAGAATTATACCAGCTGGAAAAGGGAGAGAAAAACCTGGGAATGT
GCTGGGCTTCCTGCTCCCTTGCCTTTCTCCTTGCCTCACCTGGGTAACAGCATTCAGCTGCTGC
TTGAAGTTTCTAGTCTGCCCTAGCAAGGATAAAGCATGTTAGATGTAGAGGTGCTTCTGCTGGT
AGCAGGGGTATTATTTGAAAAGATATATGGGGGTGGGGGGGCGGGAGGAAGCAGGTTGTGATTA
TGCAGGAAAATCCTAAAAAGTGTATGAGTGTAGGGGTAAGGGGTGGGTTGTGCAAGCAAGATCG
TAATTATTTTAAAATAAGCATATGTATTTTTATTAACTTTTAGTTAAATATAGATTATTACAAC
CAGGTCAACATAAGGCTAAATCTATATATAGAGCTAACTCAGGCATTGTCTTATTTGTAGACTA
GATAAAACAACCTGTCCTGTCCTGTCCTGTCAGTTCCCAGCTTCTTTTAGAATAAATTTAGACC
AAAAGAAGAAACTTGTCTTTGTATACCCGCAGAATTAAGTTATTGCTGTTCAAAATTGGATTTT
TCATTTTAACAGTCTCTGAAGAGTCCAGGTGCTTAGTAGATGTCTAATAAATGATTTTAAAATT
GAATTTGTTTGCTTACAATCCTCATTAACATTTCCAGAAAGGCTTCTTTCACTAAATAATGACA
TCTTAGAGGAAAGTGGTTTGTTTAAGAACTAGGGAACTCCTTCACTAAAATAGTTTGAAACCTT
GATTGAGGTATAAAATTTCAATCATAAGAGAAATGGCAGCAAAAATTCATAGTGGTCCATTTTA
GGAGGCCAGTGGTATCTGATAAATGTTAGAGTAGTGAAGTTGGGAAAGGAAATTGTGGGGATTT
GTAATATTCTCTTTGTTGTTTCTCTTCTGGGTCATGGTAAAAACAATAAATTATCATCTCTAGG
TGGCAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005328488	(Get FASTA)	NCBI Sequence Viewer
	XP_005328489	(Get FASTA)	NCBI Sequence Viewer
	XP_013215522	(Get FASTA)	NCBI Sequence Viewer
	XP_021584210	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000009123.2
	ENSSTOP00000015256.2
	ENSSTOP00000027452.1
GenBank Protein	KAG3259939	(Get FASTA)	NCBI Sequence Viewer
	KAG3259940	(Get FASTA)	NCBI Sequence Viewer
	KAG3259941	(Get FASTA)	NCBI Sequence Viewer
	KAG3259942	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005328489 ⟸ XM_005328432
- Peptide Label:	isoform X1
- UniProtKB:	I3MEZ1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMTAESREATGLSPQAAQEKDGIVIVKVEEEDEDDHMWGQDSNLQETPPPDPEIFRQRFRRFCY QNTFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKELQVWLQEYRPDSGEEAV TLLEDLELDLSGQQVPGQVHGPEMLARGMVPLDPVQESSSFDLHHEASQSHFKHSSRKPRLLQS RALPATHVPAPHHEGSPRDQAMASALLTADSQAMVKIEDMAVSLILEEWGCQNLARRNLNRDSR QENYGNVFSQGCETRNENKESTSKAEVTEDSASHGEKAGRFQKEFGEKREHQGRVVERQQRNPE EKTGKEKKESGPTTAREKKPTTGERGPREKGKGLGRSFSLSSNFNTPEEVPTGAKSHRCDECGK CFTRSSSLIRHKIIHTGEKPYECSECGKAFSLNSNLVLHQRIHTGEKPHECNECGKAFSHSSNL ILHQRIHSGEKPYECNECGKAFSQSSDLTKHQRIHTGEKPYECSECGKAFNRNSYLILHRRIHT REKPYKCTKCGKAFTRSSTLTLHHRIHARERALEYSPASLDAFGAFLKSCV hide sequence

RefSeq Acc Id:

XP_013215522 ⟸ XM_013360068

- Peptide Label:

isoform X4

- Sequence:

show sequence

MMTAESREATGLSPQAAQEKDGIVIVKVEEEDEDDHMWGQDSNLQETPPPDPEIFRQRFRRFCY
QNTFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKELQVWLQEYRPDSGEEAV
TLLEDLELDLSGQQVPGQVHGPEMLARGMVPLDPVQESSSFDLHHEASQSHFKHSSRKPRLLQS
RALPATHVPAPHHEGSPRDQAMASALLTADSQAMVKIEDMAVSLILEEWGCQNLARRNLNRDSR
QENYGNVFSQGCETRNENKESTSKAEVTEDSASHGEKAGRFQKEFGEKREHQGRVVERQQRNPE
EKTGKEKKESGPTTAREKKPTTGERGPREKGKGLGRSFSLSSNFNTPEEVPTGAKSHRCDECGK
CFTRSSSLIRHKIIHTGEKPYECSECGKAFSLNSNLVLHQRIHTGEKPHECNECGKAFSHSSNL
ILHQRIHSGEKPYECNECGKAFSQSSDLTKHQRIHTGEKPYECSECGKAFNRNSYLILHRRIHT
REKPYKCTKCGKAFTRSSTLTLHHRIHTGERRYICAECGKAFSNSSNLTKHRRTHTGEKPYVCT
KCGKAFSHSSNLTLHYRTHLVERPYDCKCGKAFGQSSDLLKHQRMHTEEAPYQCKDCGKAFSGK
GSLIRHYRIHTGEKPYQCNECGKSFSQHAGLSSHQRLHTGEKPYKCKECGKAFNHSSNFNKHHR
IHTGEKPYWCNHCGKTFCSKSNLSKHQRVHTGEGEVL

hide sequence

RefSeq Acc Id:	XP_005328488 ⟸ XM_005328431
- Peptide Label:	isoform X3
- UniProtKB:	I3MT11 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMTKVVGMATVLGPRPPQDQVGPVIVKVEDEEEKGKCLPSLEMFRQRFRQFGYHDTPGPREALS QLRVLCCEWLRPEIHTKEQILELLVLEQFLTILPQELQAWVQDHCPESAEEAVTLLEDLERELD EPALQVSTPNEQKQVWEKTSSSGSAKASLSSMQTQSVETSPKYESWGPLYIQETGEEQDYTQDP RKSQDYKLDPHNEESADEQKSSEEESHADGLKGDIIPVIVANKCGARSERQWGNLGKERGAKTP LQDTGSKKGAESVHTKPTPGERRYICAECGKAFSNSSNLTKHRRTHTGEKPYVCTKCGKAFSHS SNLTLHYRTHLVERPYDCKCGKAFGQSSDLLKHQRMHTEEAPYQCKDCGKAFSGKGSLIRHYRI HTGEKPYQCNECGKSFSQHAGLSSHQRLHTGEKPYKCKECGKAFNHSSNFNKHHRIHTGEKPYW CNHCGKTFCSKSNLSKHQRVHTGEGEVL hide sequence

RefSeq Acc Id:	XP_021584210 ⟸ XM_021728535
- Peptide Label:	isoform X2
- UniProtKB:	A0A287D1Q5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMTAESREATGLSPQAAQEKDGIVIVKVEEEDEDDHMWGQDSNLQETPPPDPEIFRQRFRRFCY QNTFGPREALSRLKELCHQWLRPEINTKEQILELLVLEQFLSILPKELQVWLQEYRPDSGEEAV TLLEDLELDLSGQQVPGQVHGPEMLARGMVPLDPVQESSSFDLHHEASQSHFKHSSRKPRLLQS RGCETRNENKESTSKAEVTEDSASHGEKAGRFQKEFGEKREHQGRVVERQQRNPEEKTGKEKKE SGPTTAREKKPTTGERGPREKGKGLGRSFSLSSNFNTPEEVPTGAKSHRCDECGKCFTRSSSLI RHKIIHTGEKPYECSECGKAFSLNSNLVLHQRIHTGEKPHECNECGKAFSHSSNLILHQRIHSG EKPYECNECGKAFSQSSDLTKHQRIHTGEKPYECSECGKAFNRNSYLILHRRIHTREKPYKCTK CGKAFTRSSTLTLHHRIHARERALEYSPASLDAFGAFLKSCV hide sequence

Ensembl Acc Id:

ENSSTOP00000027452 ⟸ ENSSTOT00000040399

Ensembl Acc Id:

ENSSTOP00000009123 ⟸ ENSSTOT00000010170

Ensembl Acc Id:

ENSSTOP00000015256 ⟸ ENSSTOT00000030025

Protein Domains

C2H2-type KRAB SCAN box

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000010173	Ensembl, UniProtKB/TrEMBL
	ENSSTOG00000021741	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000010170.3	UniProtKB/TrEMBL
	ENSSTOT00000030025.2	UniProtKB/TrEMBL
	ENSSTOT00000040399.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.4020.10	UniProtKB/TrEMBL
	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	KRAB	UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/TrEMBL
	SCAN_dom	UniProtKB/TrEMBL
	SCAN_sf	UniProtKB/TrEMBL
	Zinc_finger	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	LOC101968831	ENTREZGENE
PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE PRDM9	UniProtKB/TrEMBL
	PR DOMAIN ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER AND SCAN DOMAIN-CONTAINING	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN WITH KRAB AND SCAN DOMAINS 1	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	SCAN	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
	zf-H2C2_2	UniProtKB/TrEMBL
PROSITE	KRAB	UniProtKB/TrEMBL
	SCAN_BOX	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	KRAB	UniProtKB/TrEMBL
	SCAN	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Retrovirus capsid dimerization domain-like	UniProtKB/TrEMBL
	SSF109640	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A287D1Q5	ENTREZGENE, UniProtKB/TrEMBL
	I3MEZ1	ENTREZGENE, UniProtKB/TrEMBL
	I3MT11	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-07-13	Zkscan1	zinc finger with KRAB and SCAN domains 1	LOC101968831	zinc finger protein with KRAB and SCAN domains 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar