Stath (statherin) - Rat Genome Database

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Gene: Stath (statherin) Ictidomys tridecemlineatus
Analyze
Symbol: Stath
Name: statherin
RGD ID: 125030623
Description: ASSOCIATED WITH autistic disorder (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Rat
Bonobo
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528516,037,609 - 16,065,984 (+)NCBIHiC_Itri_2


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Stath
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528516,037,609 - 16,065,984 (+)NCBIHiC_Itri_2
STATH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38469,995,966 - 70,002,570 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl469,995,966 - 70,002,570 (+)EnsemblGRCh38hg38GRCh38
GRCh37470,861,683 - 70,868,287 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36470,896,237 - 70,902,762 (+)NCBINCBI36Build 36hg18NCBI36
Build 34471,042,407 - 71,048,933NCBI
Celera468,215,077 - 68,221,603 (+)NCBICelera
Cytogenetic Map4q13.3NCBI
HuRef466,659,309 - 66,665,835 (+)NCBIHuRef
CHM1_1470,898,027 - 70,904,554 (+)NCBICHM1_1
T2T-CHM13v2.0473,330,761 - 73,337,367 (+)NCBIT2T-CHM13v2.0
Stath
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81420,586,563 - 20,590,421 (-)NCBIGRCr8
mRatBN7.21420,307,324 - 20,311,182 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1420,307,324 - 20,311,182 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1420,237,364 - 20,241,223 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01421,556,250 - 21,560,109 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01420,293,461 - 20,297,320 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01421,957,013 - 21,960,871 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1421,957,013 - 21,960,871 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01421,871,823 - 21,875,681 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41421,832,720 - 21,836,578 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1419,710,408 - 19,714,266 (-)NCBICelera
Cytogenetic Map14p21NCBI
STATH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2360,086,727 - 60,094,042 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1460,289,675 - 60,296,987 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0454,234,876 - 54,241,349 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1460,571,712 - 60,578,215 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl460,571,712 - 60,578,215 (-)Ensemblpanpan1.1panPan2
STATH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl866,944,849 - 66,949,826 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1866,944,851 - 66,953,345 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28148,259,197 - 148,267,691 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_040292335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_040292335   ⟹   XP_040148269
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528516,037,609 - 16,065,984 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040148269 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040148269   ⟸   XM_040292335


Additional Information

Database Acc Id Source(s)
NCBI Gene Stath ENTREZGENE