STATH (statherin) - Rat Genome Database

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Gene: STATH (statherin) Pan paniscus
Analyze
Symbol: STATH
Name: statherin
RGD ID: 11962104
Description: ENCODES a protein that exhibits hydroxyapatite binding (inferred); INVOLVED IN biomineral tissue development (inferred); defense response to bacterium (inferred); regulation of bone mineralization (inferred); ASSOCIATED WITH autistic disorder (ortholog); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2360,086,727 - 60,094,042 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1460,289,675 - 60,296,987 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0454,234,876 - 54,241,349 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1460,571,712 - 60,578,215 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl460,571,712 - 60,578,215 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
STATH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2360,086,727 - 60,094,042 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1460,289,675 - 60,296,987 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0454,234,876 - 54,241,349 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1460,571,712 - 60,578,215 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl460,571,712 - 60,578,215 (-)Ensemblpanpan1.1panPan2
STATH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38469,995,966 - 70,002,570 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl469,995,966 - 70,002,570 (+)EnsemblGRCh38hg38GRCh38
GRCh37470,861,683 - 70,868,287 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36470,896,237 - 70,902,762 (+)NCBINCBI36Build 36hg18NCBI36
Build 34471,042,407 - 71,048,933NCBI
Celera468,215,077 - 68,221,603 (+)NCBICelera
Cytogenetic Map4q13.3NCBI
HuRef466,659,309 - 66,665,835 (+)NCBIHuRef
CHM1_1470,898,027 - 70,904,554 (+)NCBICHM1_1
T2T-CHM13v2.0473,330,761 - 73,337,367 (+)NCBIT2T-CHM13v2.0
Stath
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528516,037,609 - 16,065,984 (+)NCBIHiC_Itri_2
STATH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl866,944,849 - 66,949,826 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1866,944,851 - 66,953,345 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28148,259,197 - 148,267,691 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000048102   ⟹   ENSPPAP00000025275
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl460,571,712 - 60,578,215 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000048103   ⟹   ENSPPAP00000025276
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl460,571,719 - 60,578,215 (-)Ensembl
RefSeq Acc Id: XM_057302245   ⟹   XP_057158228
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2360,086,727 - 60,094,042 (-)NCBI
NHGRI_mPanPan1460,289,675 - 60,296,987 (-)NCBI
Protein Sequences
Protein RefSeqs XP_057158228 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000025275.1
  ENSPPAP00000025276.1
Ensembl Acc Id: ENSPPAP00000025275   ⟸   ENSPPAT00000048102
Ensembl Acc Id: ENSPPAP00000025276   ⟸   ENSPPAT00000048103
RefSeq Acc Id: XP_057158228   ⟸   XM_057302245
- UniProtKB: A0A2R9B880 (UniProtKB/TrEMBL),   A0A2R9BAI4 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000035772 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000048102.1 UniProtKB/TrEMBL
  ENSPPAT00000048103.1 UniProtKB/TrEMBL
InterPro Histatin/statherin UniProtKB/TrEMBL
  Statherin UniProtKB/TrEMBL
NCBI Gene STATH ENTREZGENE
PANTHER PTHR15057 UniProtKB/TrEMBL
  STATHERIN UniProtKB/TrEMBL
Pfam Statherin UniProtKB/TrEMBL
PIRSF Statherin UniProtKB/TrEMBL
UniProt A0A2R9B880 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BAI4 ENTREZGENE, UniProtKB/TrEMBL