Ncs1 (neuronal calcium sensor 1) - Rat Genome Database

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Gene: Ncs1 (neuronal calcium sensor 1) Ictidomys tridecemlineatus
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Symbol: Ncs1
Name: neuronal calcium sensor 1
RGD ID: 125021173
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); magnesium ion binding (ortholog); protein kinase binding (ortholog); INVOLVED IN positive regulation of calcium-mediated signaling (ortholog); positive regulation of exocytosis (ortholog); regulation of neuron projection development (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); dystonia (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN axon (ortholog); calyx of Held (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NCS1-containing
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947197,522,579 - 197,564,271 (+)NCBIHiC_Itri_2


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ncs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947197,522,579 - 197,564,271 (+)NCBIHiC_Itri_2
NCS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389130,172,404 - 130,237,303 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9130,172,404 - 130,237,303 (+)EnsemblGRCh38hg38GRCh38
GRCh379132,934,683 - 132,999,582 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369131,974,678 - 132,038,727 (+)NCBINCBI36Build 36hg18NCBI36
Build 349130,014,410 - 130,078,457NCBI
Celera9103,585,939 - 103,651,680 (+)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9102,534,885 - 102,599,998 (+)NCBIHuRef
CHM1_19133,083,844 - 133,148,450 (+)NCBICHM1_1
T2T-CHM13v2.09142,377,132 - 142,442,184 (+)NCBIT2T-CHM13v2.0
Ncs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39231,135,766 - 31,186,001 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl231,135,835 - 31,186,001 (+)EnsemblGRCm39 Ensembl
GRCm38231,245,708 - 31,295,989 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl231,245,823 - 31,295,989 (+)EnsemblGRCm38mm10GRCm38
MGSCv37231,101,443 - 31,150,992 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36231,067,932 - 31,117,481 (+)NCBIMGSCv36mm8
MGSCv36231,588,257 - 31,638,499 (+)NCBIMGSCv36mm8
Celera230,984,573 - 30,999,665 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.81NCBI
Ncs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8334,920,949 - 34,966,554 (+)NCBIGRCr8
mRatBN7.2314,523,220 - 14,568,829 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl314,523,220 - 14,568,829 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx317,596,129 - 17,641,998 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0326,181,136 - 26,227,007 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0324,428,400 - 24,474,272 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0310,556,250 - 10,602,672 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl310,553,589 - 10,602,672 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0315,911,972 - 15,960,622 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4310,305,202 - 10,354,149 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1310,200,569 - 10,249,517 (+)NCBI
Celera39,278,946 - 9,324,605 (+)NCBICelera
Cytogenetic Map3p12NCBI
Ncs1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955513268,979 - 289,385 (+)NCBIChiLan1.0ChiLan1.0
NCS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2119,112,064 - 9,176,572 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan199,114,408 - 9,179,021 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09101,299,724 - 101,364,897 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19129,950,921 - 130,016,257 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9129,950,921 - 130,016,257 (+)Ensemblpanpan1.1panPan2
NCS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1953,661,361 - 53,676,925 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl953,672,910 - 53,676,910 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha952,857,022 - 52,906,752 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0954,558,680 - 54,608,458 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl954,561,828 - 54,607,982 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1953,334,722 - 53,385,113 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0953,656,911 - 53,706,612 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0953,749,027 - 53,798,770 (-)NCBIUU_Cfam_GSD_1.0
NCS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1270,274,562 - 270,334,907 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11270,274,504 - 270,334,908 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21304,146,318 - 304,207,069 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NCS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1127,910,495 - 7,975,650 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660797,474,591 - 7,539,893 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncs1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247605,376,634 - 5,410,473 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247605,374,211 - 5,410,550 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_040286495   ⟹   XP_040142429
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947197,530,955 - 197,564,271 (+)NCBI
RefSeq Acc Id: XM_040286496   ⟹   XP_040142430
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947197,531,008 - 197,564,271 (+)NCBI
RefSeq Acc Id: XM_040286497   ⟹   XP_040142431
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947197,522,579 - 197,564,271 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040142429 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142430 (Get FASTA)   NCBI Sequence Viewer  
  XP_040142431 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3288184 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040142431   ⟸   XM_040286497
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040142429   ⟸   XM_040286495
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040142430   ⟸   XM_040286496
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
NCBI Gene Ncs1 ENTREZGENE