Hoxc11 (homeobox C11) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Hoxc11 (homeobox C11) Ictidomys tridecemlineatus
Analyze
Symbol: Hoxc11
Name: homeobox C11
RGD ID: 12493520
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN anterior/posterior pattern specification (inferred); embryonic digit morphogenesis (inferred); embryonic skeletal joint morphogenesis (inferred); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox protein Hox-C11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494561,967,514 - 61,970,059 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651211,194,876 - 11,197,316 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651211,194,876 - 11,197,316 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hoxc11SquirrelNeurodevelopmental Disorders  ISOHOXC11 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868


Biological Process
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hoxc11Squirrelanterior/posterior pattern specification acts_upstream_of_or_withinIEAUniProtKB:P31313 and ensembl:ENSMUSP00000001701150520179 EnsemblGO_REF:0000107
Hoxc11Squirrelembryonic digit morphogenesis acts_upstream_of_or_withinIEAUniProtKB:P31313 and ensembl:ENSMUSP00000001701150520179 EnsemblGO_REF:0000107
Hoxc11Squirrelembryonic skeletal joint morphogenesis acts_upstream_of_or_withinIEAUniProtKB:P31313 and ensembl:ENSMUSP00000001701150520179 EnsemblGO_REF:0000107
Hoxc11Squirrelmetanephros development acts_upstream_of_or_withinIEAUniProtKB:P31313 and ensembl:ENSMUSP00000001701150520179 EnsemblGO_REF:0000107
Hoxc11Squirrelorgan induction acts_upstream_of_or_withinIEAUniProtKB:P31313 and ensembl:ENSMUSP00000001701150520179 EnsemblGO_REF:0000107
Hoxc11Squirrelpositive regulation of transcription by RNA polymerase II involved_inIEAUniProtKB:O43248 and ensembl:ENSP00000446680150520179 EnsemblGO_REF:0000107
Hoxc11Squirrelproximal/distal pattern formation acts_upstream_of_or_withinIEAUniProtKB:P31313 and ensembl:ENSMUSP00000001701150520179 EnsemblGO_REF:0000107
Hoxc11Squirrelregulation of DNA-templated transcription involved_inIEAInterPro:IPR017970150520179 InterProGO_REF:0000002
Hoxc11Squirrelregulation of transcription by RNA polymerase II involved_inIEAPANTHER:PTN000675119150520179 TreeGrafterGO_REF:0000118
Hoxc11Squirrelskeletal system development acts_upstream_of_or_withinIEAUniProtKB:P31313 and ensembl:ENSMUSP00000001701150520179 EnsemblGO_REF:0000107
1 to 10 of 10 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hoxc11Squirrelcytosol located_inIEAUniProtKB:O43248 and ensembl:ENSP00000446680150520179 EnsemblGO_REF:0000107
Hoxc11Squirrelnucleoplasm located_inIEAARBA:ARBA00026290150520179 UniProtGO_REF:0000117
Hoxc11Squirrelnucleoplasm located_inIEAUniProtKB:O43248 and ensembl:ENSP00000446680150520179 EnsemblGO_REF:0000107
Hoxc11Squirrelnucleus located_inIEAUniRule:UR000401037150520179 UniProtGO_REF:0000104
Hoxc11Squirrelnucleus located_inIEAPANTHER:PTN000675119150520179 TreeGrafterGO_REF:0000118
Hoxc11Squirrelnucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
Hoxc11Squirrelnucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043

Molecular Function
1 to 12 of 12 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hoxc11SquirrelDNA binding enablesIEAInterPro:IPR001356 and InterPro:IPR020479150520179 InterProGO_REF:0000002
Hoxc11SquirrelDNA binding enablesIEAUniRule:UR000401037150520179 UniProtGO_REF:0000104
Hoxc11SquirrelDNA binding enablesIEAUniProtKB-KW:KW-0238 and UniProtKB-KW:KW-0371150520179 UniProtGO_REF:0000043
Hoxc11SquirrelDNA-binding transcription activator activity, RNA polymerase II-specific enablesIEAUniProtKB:O43248 and ensembl:ENSP00000446680150520179 EnsemblGO_REF:0000107
Hoxc11SquirrelDNA-binding transcription factor activity, RNA polymerase II-specific enablesIEAInterPro:IPR017970150520179 InterProGO_REF:0000002
Hoxc11SquirrelDNA-binding transcription factor activity, RNA polymerase II-specific enablesIEAPANTHER:PTN000675119150520179 TreeGrafterGO_REF:0000118
Hoxc11Squirrelprotein binding enablesISOUniProtKB:A0A6Q8PF08 more ...9068941 PMID:32814053IntActPMID:32814053
Hoxc11Squirrelprotein binding enablesISOUniProtKB:P25786 and UniProtKB:Q15642-29068941 PMID:32296183IntActPMID:32296183
Hoxc11Squirrelprotein binding enablesISOUniProtKB:P428589068941 PMID:23275563IntActPMID:23275563
Hoxc11SquirrelRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesIEAUniProtKB:O43248 and ensembl:ENSP00000446680150520179 EnsemblGO_REF:0000107
Hoxc11SquirrelRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesIEAPANTHER:PTN000675119150520179 TreeGrafterGO_REF:0000118
Hoxc11Squirrelsequence-specific double-stranded DNA binding enablesIEAUniProtKB:O43248 and ensembl:ENSP00000446680150520179 EnsemblGO_REF:0000107
1 to 12 of 12 rows

PMID:22301074   PMID:30032202  



Hoxc11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494561,967,514 - 61,970,059 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651211,194,876 - 11,197,316 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651211,194,876 - 11,197,316 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HOXC11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381253,973,126 - 53,977,643 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1253,973,126 - 53,977,643 (+)EnsemblGRCh38hg38GRCh38
GRCh371254,366,910 - 54,371,427 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361252,653,177 - 52,656,470 (+)NCBINCBI36Build 36hg18NCBI36
Build 341252,653,195 - 52,656,468NCBI
Celera1254,016,511 - 54,019,822 (+)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1251,404,138 - 51,407,449 (+)NCBIHuRef
CHM1_11254,333,599 - 54,336,910 (+)NCBICHM1_1
T2T-CHM13v2.01253,938,618 - 53,943,153 (+)NCBIT2T-CHM13v2.0
Hoxc11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915102,862,961 - 102,865,136 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15102,862,862 - 102,866,143 (+)EnsemblGRCm39 Ensembl
GRCm3815102,954,526 - 102,956,701 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15102,954,427 - 102,957,708 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715102,784,957 - 102,787,132 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3615102,782,560 - 102,784,735 (+)NCBIMGSCv36mm8
Celera15105,115,456 - 105,117,632 (+)NCBICelera
Cytogenetic Map15F3NCBI
cM Map1558.02NCBI
Hoxc11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87135,969,707 - 135,973,222 (+)NCBIGRCr8
mRatBN7.27134,091,224 - 134,094,738 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7134,091,552 - 134,094,738 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7135,846,891 - 135,850,122 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07138,076,265 - 138,079,496 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07138,062,254 - 138,065,485 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07144,565,392 - 144,568,580 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7144,565,392 - 144,567,580 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07142,356,703 - 142,358,942 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera7130,517,972 - 130,520,959 (+)NCBICelera
Cytogenetic Map7q36NCBI
Hoxc11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554581,231,445 - 1,234,798 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554581,231,625 - 1,234,785 (+)NCBIChiLan1.0ChiLan1.0
HOXC11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21040,209,471 - 40,213,236 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11240,201,196 - 40,209,548 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01234,777,790 - 34,782,104 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11235,567,093 - 35,570,396 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1235,567,093 - 35,570,396 (-)Ensemblpanpan1.1panPan2
HOXC11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1271,287,326 - 1,289,577 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl271,287,380 - 1,289,372 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2744,960,239 - 44,962,245 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0271,291,036 - 1,293,043 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl271,291,044 - 1,293,036 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1271,308,728 - 1,310,736 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,290,305 - 1,292,309 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02745,363,845 - 45,365,853 (+)NCBIUU_Cfam_GSD_1.0
HOXC11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl519,178,619 - 19,189,013 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1519,181,580 - 19,189,031 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2519,685,024 - 19,687,605 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103238414
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11150,076,648 - 50,087,084 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1150,083,893 - 50,086,060 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037195,964,311 - 195,965,531 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hoxc11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249042,027,993 - 2,030,148 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249042,027,792 - 2,030,148 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.





RefSeq Transcripts XM_005325063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000027675   ⟹   ENSSTOP00000019763
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493651211,194,876 - 11,197,316 (+)Ensembl
RefSeq Acc Id: XM_005325063   ⟹   XP_005325120
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494561,967,514 - 61,970,059 (-)NCBI
SpeTri2.0NW_00493651211,194,876 - 11,197,316 (+)NCBI
Sequence:
Protein RefSeqs XP_005325120 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000019763.1
GenBank Protein KAG3291805 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005325120   ⟸   XM_005325063
- UniProtKB: I3N5W7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000019763   ⟸   ENSSTOT00000027675
Homeobox



1 to 19 of 19 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000028958 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000027675.2 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro DUF3528 UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/TrEMBL
  Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/TrEMBL
NCBI Gene Hoxc11 ENTREZGENE
PANTHER HOMEOBOX PROTEIN HOX-A11-RELATED UniProtKB/TrEMBL
  HOMEOBOX PROTEIN HOX-C11 UniProtKB/TrEMBL
Pfam DUF3528 UniProtKB/TrEMBL
  Homeodomain UniProtKB/TrEMBL
PRINTS HOMEOBOX UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt I3N5W7 ENTREZGENE, UniProtKB/TrEMBL
1 to 19 of 19 rows