LOC103238414 (uncharacterized LOC103238414) - Rat Genome Database

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Gene: LOC103238414 (uncharacterized LOC103238414) Chlorocebus sabaeus
Analyze
Symbol: LOC103238414 (Ensembl: HOXC11)
Name: uncharacterized LOC103238414 (Ensembl:homeobox C11)
RGD ID: 18499727
Description: INVOLVED IN anterior/posterior pattern specification (ortholog); embryonic digit morphogenesis (ortholog); embryonic skeletal joint morphogenesis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: homeobox C11; homeobox protein Hox-C11; HOXC11; uncharacterized protein LOC103238414
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11150,076,648 - 50,087,084 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1150,083,893 - 50,086,060 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037195,964,311 - 195,965,531 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

hemolymphoid system
High
Medium
Low 10
Below cutoff 7

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000003492   ⟹   ENSCSAP00000001766
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1150,083,893 - 50,086,060 (+)Ensembl
RefSeq Acc Id: XM_037996998   ⟹   XP_037852926
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037195,964,311 - 195,965,147 (-)NCBI
RefSeq Acc Id: XR_005239972
Type: NON-CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666037195,964,311 - 195,965,531 (-)NCBI
Protein Sequences
Protein RefSeqs XP_037852926 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: ENSCSAP00000001766   ⟸   ENSCSAT00000003492
RefSeq Acc Id: XP_037852926   ⟸   XM_037996998


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000005457 Ensembl, ENTREZGENE
NCBI Gene HOXC11 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 LOC103238414  uncharacterized LOC103238414  HOXC11  homeobox C11  Symbol and/or name change 5135510 APPROVED