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Gene: Bcam (basal cell adhesion molecule (Lutheran blood group)) Ictidomys tridecemlineatus

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Symbol:

Bcam

Name:

basal cell adhesion molecule (Lutheran blood group)

RGD ID:

12490721

Description:

ENCODES a protein that exhibits laminin binding (inferred); laminin receptor activity (inferred); INVOLVED IN cell adhesion (inferred); cell-matrix adhesion (inferred); FOUND IN cell surface (inferred); membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

basal cell adhesion molecule

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	17,109,872 - 17,118,596 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936706	1,457,174 - 1,467,848 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936706	1,451,609 - 1,465,939 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Bcam	Squirrel	cell adhesion	involved_in	IEA	GO:0005055	150520179		GOC	GO_REF:0000108
Bcam	Squirrel	cell adhesion	acts_upstream_of_or_within	IEA	UniProtKB:Q9R069\|ensembl:ENSMUSP00000003061	150520179		Ensembl	GO_REF:0000107
Bcam	Squirrel	cell adhesion	involved_in	IEA	UniProtKB:P50895\|ensembl:ENSP00000270233	150520179		Ensembl	GO_REF:0000107
Bcam	Squirrel	cell-matrix adhesion	involved_in	IEA	UniProtKB:P50895\|ensembl:ENSP00000270233	150520179		Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Bcam	Squirrel	cell surface	located_in	IEA	UniProtKB:Q9R069\|ensembl:ENSMUSP00000003061	150520179		Ensembl	GO_REF:0000107
Bcam	Squirrel	membrane	located_in	IEA	UniProtKB-KW:KW-0472	150520179		UniProt	GO_REF:0000043
Bcam	Squirrel	membrane	located_in	IEA	UniProtKB-SubCell:SL-0162	150520179		UniProt	GO_REF:0000044
Bcam	Squirrel	plasma membrane	located_in	IEA	PANTHER:PTN000240011	150520179		TreeGrafter	GO_REF:0000118
Bcam	Squirrel	plasma membrane	located_in	IEA	UniProtKB:Q9R069\|ensembl:ENSMUSP00000003061	150520179		Ensembl	GO_REF:0000107
Bcam	Squirrel	plasma membrane	is_active_in	IEA	UniProtKB:P50895\|ensembl:ENSP00000270233	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Bcam	Squirrel	laminin binding	enables	IEA	UniProtKB:P50895\|ensembl:ENSP00000270233	150520179		Ensembl	GO_REF:0000107
Bcam	Squirrel	laminin receptor activity	enables	IEA	PANTHER:PTN000240011	150520179		TreeGrafter	GO_REF:0000118
Bcam	Squirrel	laminin receptor activity	enables	IEA	UniProtKB:P50895\|UniProtKB:Q9R069\|ensembl:ENSMUSP00000003061\|ensembl:ENSP00000270233	150520179		Ensembl	GO_REF:0000107
Bcam	Squirrel	protein binding	enables	ISO	UniProtKB:O95198	9068941	PMID:25416956, PMID:25910212	IntAct	PMID:25416956\|PMID:25910212
Bcam	Squirrel	protein binding	enables	ISO	RGD:68545	9068941	PMID:24453976	CACAO	PMID:24453976
Bcam	Squirrel	protein binding	enables	ISO	UniProtKB:P0DPK4\|UniProtKB:Q07627\|UniProtKB:Q8IUG1\|UniProtKB:Q99750\|UniProtKB:Q9C029	9068941	PMID:32296183	IntAct	PMID:32296183

PMID:30032202

Bcam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	17,109,872 - 17,118,596 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936706	1,457,174 - 1,467,848 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936706	1,451,609 - 1,465,939 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BCAM
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	44,809,059 - 44,821,421 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	44,809,071 - 44,821,421 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	45,312,316 - 45,324,678 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	50,004,178 - 50,016,518 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	50,004,216 - 50,016,511	NCBI
Celera	19	42,115,754 - 42,128,094 (+)	NCBI		Celera
Cytogenetic Map	19	q13.32	NCBI
HuRef	19	41,743,446 - 41,755,786 (+)	NCBI		HuRef
CHM1_1	19	45,315,022 - 45,327,384 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	47,633,808 - 47,646,153 (+)	NCBI		T2T-CHM13v2.0

Bcam
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	19,490,063 - 19,504,457 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	19,490,056 - 19,504,941 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	19,756,138 - 19,770,532 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	19,756,131 - 19,771,016 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	20,341,487 - 20,355,881 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	18,914,661 - 18,928,997 (-)	NCBI		MGSCv36	mm8
Celera	7	17,162,318 - 17,178,338 (-)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	9.94	NCBI

Bcam
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	88,542,971 - 88,557,358 (-)	NCBI		GRCr8
mRatBN7.2	1	79,415,016 - 79,429,403 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	79,415,017 - 79,429,403 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	84,809,588 - 84,823,988 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	93,361,117 - 93,375,464 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	86,564,702 - 86,579,102 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	80,674,463 - 80,689,122 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	80,674,444 - 80,689,171 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	81,939,821 - 81,954,480 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	79,067,352 - 79,081,739 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	79,145,463 - 79,159,850 (-)	NCBI
Celera	1	73,873,493 - 73,887,880 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Bcam
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955555	1,942,583 - 1,950,372 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955555	1,943,445 - 1,950,810 (+)	NCBI	ChiLan1.0	ChiLan1.0

BCAM
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	50,968,108 - 50,980,749 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	52,840,067 - 52,852,703 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	41,756,492 - 41,769,132 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	50,361,780 - 50,374,600 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	50,361,780 - 50,374,600 (+)	Ensembl	panpan1.1		panPan2

BCAM
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	110,575,883 - 110,585,100 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	110,575,924 - 110,585,035 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	110,056,830 - 110,066,172 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	111,138,698 - 111,148,041 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	111,137,660 - 111,148,040 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	110,780,182 - 110,789,389 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	110,415,767 - 110,425,111 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	111,285,027 - 111,294,370 (-)	NCBI		UU_Cfam_GSD_1.0

BCAM
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	51,298,806 - 51,310,528 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	51,298,743 - 51,310,543 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	47,198,260 - 47,210,371 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BCAM
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	38,288,507 - 38,301,587 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	38,288,537 - 38,301,634 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	17,855,578 - 17,868,876 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bcam
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624907	1,695,698 - 1,708,345 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624907	1,696,078 - 1,705,260 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005338267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000024933 ⟹ ENSSTOP00000022984

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936706	1,457,174 - 1,467,848 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000037214 ⟹ ENSSTOP00000026911

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936706	1,457,174 - 1,467,848 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000039954 ⟹ ENSSTOP00000027383

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936706	1,458,236 - 1,467,848 (+)	Ensembl

RefSeq Acc Id:

XM_040279300 ⟹ XP_040135234

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	17,110,913 - 17,118,596 (+)	NCBI

RefSeq Acc Id:

XM_040279301 ⟹ XP_040135235

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	17,109,872 - 17,118,596 (+)	NCBI


Protein RefSeqs	XP_040135234	(Get FASTA)	NCBI Sequence Viewer
	XP_040135235	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000022984.2
	ENSSTOP00000026911.1
	ENSSTOP00000027383.1

RefSeq Acc Id:	XP_040135235 ⟸ XM_040279301
- Peptide Label:	isoform X2
- UniProtKB:	I3NF37 (UniProtKB/TrEMBL), A0A287D062 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040135234 ⟸ XM_040279300
- Peptide Label:	isoform X1
- UniProtKB:	A0A287D1F0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSSTOP00000022984 ⟸ ENSSTOT00000024933

Ensembl Acc Id:

ENSSTOP00000027383 ⟸ ENSSTOT00000039954

Ensembl Acc Id:

ENSSTOP00000026911 ⟸ ENSSTOT00000037214

Protein Domains

Ig-like

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000021794	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000024933.2	UniProtKB/TrEMBL
	ENSSTOT00000037214.1	UniProtKB/TrEMBL
	ENSSTOT00000039954.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	CD80_C2-set	UniProtKB/TrEMBL
	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
	Ig_V-set	UniProtKB/TrEMBL
	Surface_Rcpt/Adhesion_Mol	UniProtKB/TrEMBL
NCBI Gene	Bcam	ENTREZGENE
PANTHER	BASAL CELL ADHESION MOLECULE	UniProtKB/TrEMBL
	CELL SURFACE GLYCOPROTEIN MUC18-RELATED	UniProtKB/TrEMBL
Pfam	C2-set_2	UniProtKB/TrEMBL
	Ig_2	UniProtKB/TrEMBL
	Ig_3	UniProtKB/TrEMBL
	V-set	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
SMART	IGc2	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	A0A287D062	ENTREZGENE, UniProtKB/TrEMBL
	A0A287D1F0	ENTREZGENE, UniProtKB/TrEMBL
	I3NF37	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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