Khdrbs3 (KH RNA binding domain containing, signal transduction associated 3) - Rat Genome Database

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Gene: Khdrbs3 (KH RNA binding domain containing, signal transduction associated 3) Ictidomys tridecemlineatus
Analyze
Symbol: Khdrbs3
Name: KH RNA binding domain containing, signal transduction associated 3
RGD ID: 12487434
Description: ENCODES a protein that exhibits single-stranded RNA binding (ortholog); INVOLVED IN mRNA processing (ortholog); positive regulation of RNA splicing (ortholog); spermatogenesis (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); protein-containing complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: KH domain-containing, RNA-binding, signal transduction-associated protein 3; KH RNA binding domain containing, signal transduction associated 3, transcript variant X1; KH RNA binding domain containing, signal transduction associated 3, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053036,806,218 - 6,977,811 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647014,239,841 - 14,403,916 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647014,232,114 - 14,403,910 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Khdrbs3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053036,806,218 - 6,977,811 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647014,239,841 - 14,403,916 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647014,232,114 - 14,403,910 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KHDRBS3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388135,457,456 - 135,656,516 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8135,457,456 - 135,656,722 (+)EnsemblGRCh38hg38GRCh38
GRCh378136,469,699 - 136,659,853 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368136,538,898 - 136,729,031 (+)NCBINCBI36Build 36hg18NCBI36
Build 348136,538,897 - 136,729,028NCBI
Celera8132,642,482 - 132,831,891 (+)NCBICelera
Cytogenetic Map8q24.23NCBI
HuRef8131,785,096 - 131,974,740 (+)NCBIHuRef
CHM1_18136,511,650 - 136,701,600 (+)NCBICHM1_1
T2T-CHM13v2.08136,575,311 - 136,774,451 (+)NCBIT2T-CHM13v2.0
Khdrbs3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391568,800,155 - 68,973,064 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1568,800,269 - 68,973,060 (+)EnsemblGRCm39 Ensembl
GRCm381568,928,392 - 69,101,794 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1568,928,420 - 69,101,211 (+)EnsemblGRCm38mm10GRCm38
MGSCv371568,758,850 - 68,923,949 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361568,758,089 - 68,923,188 (+)NCBIMGSCv36mm8
Celera1570,448,119 - 70,614,372 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1530.36NCBI
Khdrbs3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87102,726,628 - 102,884,545 (+)NCBIGRCr8
mRatBN7.27100,837,707 - 100,995,644 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7100,837,934 - 100,988,460 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7102,574,664 - 102,718,063 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07104,776,349 - 104,919,747 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07104,717,109 - 104,860,445 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07110,031,819 - 110,179,475 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7110,031,696 - 110,179,468 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07109,965,269 - 110,111,230 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47106,539,015 - 106,614,745 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17106,573,244 - 106,648,972 (+)NCBI
Celera797,331,783 - 97,474,062 (+)NCBICelera
Cytogenetic Map7q34NCBI
Khdrbs3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554619,751,057 - 9,915,943 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554619,751,057 - 9,926,211 (+)NCBIChiLan1.0ChiLan1.0
KHDRBS3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27152,848,167 - 153,047,670 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18128,381,719 - 128,580,807 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08132,131,953 - 132,331,310 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18135,084,505 - 135,282,770 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8135,084,505 - 135,282,766 (+)Ensemblpanpan1.1panPan2
KHDRBS3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11331,397,501 - 31,583,198 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1331,392,842 - 31,605,257 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1331,374,685 - 31,559,991 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01331,768,586 - 31,954,402 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1331,763,092 - 31,954,398 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11331,490,283 - 31,675,703 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01331,584,104 - 31,769,857 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01331,934,428 - 32,120,024 (+)NCBIUU_Cfam_GSD_1.0
KHDRBS3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl46,282,076 - 6,446,389 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.146,289,577 - 6,446,494 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.246,127,960 - 6,284,514 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KHDRBS3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18129,814,228 - 130,044,479 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8129,911,686 - 130,035,258 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603910,035,579 - 10,236,195 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Khdrbs3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473520,425,148 - 20,586,626 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473520,415,996 - 20,586,632 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000008706   ⟹   ENSSTOP00000007802
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647014,239,841 - 14,403,916 (-)Ensembl
RefSeq Acc Id: XM_005316132   ⟹   XP_005316189
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053036,813,735 - 6,977,811 (-)NCBI
SpeTri2.0NW_00493647014,239,834 - 14,403,910 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021723997   ⟹   XP_021579672
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053036,813,735 - 6,977,342 (-)NCBI
SpeTri2.0NW_00493647014,239,834 - 14,403,441 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040293612   ⟹   XP_040149546
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053036,813,735 - 6,934,197 (-)NCBI
RefSeq Acc Id: XM_040293613   ⟹   XP_040149547
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053036,813,735 - 6,938,236 (-)NCBI
RefSeq Acc Id: XM_040293614   ⟹   XP_040149548
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053036,813,735 - 6,976,817 (-)NCBI
RefSeq Acc Id: XR_002483555
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244053036,806,218 - 6,977,342 (-)NCBI
SpeTri2.0NW_00493647014,232,114 - 14,403,441 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005316189   ⟸   XM_005316132
- Peptide Label: isoform X2
- UniProtKB: I3MC50 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021579672   ⟸   XM_021723997
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040149548   ⟸   XM_040293614
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040149547   ⟸   XM_040293613
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040149546   ⟸   XM_040293612
- Peptide Label: isoform X3
Ensembl Acc Id: ENSSTOP00000007802   ⟸   ENSSTOT00000008706
Protein Domains
K Homology


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008710 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008706.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.10 UniProtKB/TrEMBL
InterPro BBP-like UniProtKB/TrEMBL
  KH_dom UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/TrEMBL
  Qua1_dom UniProtKB/TrEMBL
  Sam68-YY UniProtKB/TrEMBL
NCBI Gene Khdrbs3 ENTREZGENE
PANTHER KH DOMAIN-CONTAINING, RNA-BINDING, SIGNAL TRANSDUCTION-ASSOCIATED PROTEIN 3 UniProtKB/TrEMBL
  PTHR11208 UniProtKB/TrEMBL
Pfam Qua1 UniProtKB/TrEMBL
  Sam68-YY UniProtKB/TrEMBL
SMART SM00322 UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/TrEMBL
UniProt I3MC50 ENTREZGENE, UniProtKB/TrEMBL