Khdrbs3 (KH domain containing, RNA binding, signal transduction associated 3) - Rat Genome Database

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Gene: Khdrbs3 (KH domain containing, RNA binding, signal transduction associated 3) Mus musculus
Analyze
Symbol: Khdrbs3
Name: KH domain containing, RNA binding, signal transduction associated 3
RGD ID: 1550027
MGI Page MGI
Description: Predicted to enable RNA binding activity; identical protein binding activity; and protein domain specific binding activity. Involved in regulation of mRNA splicing, via spliceosome. Located in nucleoplasm. Is expressed in several structures, including central nervous system; genitourinary system; lung; sensory organ; and stomach. Orthologous to human KHDRBS3 (KH RNA binding domain containing, signal transduction associated 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Etl; Etle; etoile; KH domain-containing, RNA-binding, signal transduction-associated protein 3; RNA-binding protein Etoile; Salp; sam68-like mammalian protein 2; SLM; SLM-2; Slm2; T-S; T-STAR
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391568,800,155 - 68,973,064 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1568,800,269 - 68,973,060 (+)EnsemblGRCm39 Ensembl
GRCm381568,928,392 - 69,101,794 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1568,928,420 - 69,101,211 (+)EnsemblGRCm38mm10GRCm38
MGSCv371568,758,850 - 68,923,949 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361568,758,089 - 68,923,188 (+)NCBIMGSCv36mm8
Celera1570,448,119 - 70,614,372 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1530.36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Characterization of Sam68-like mammalian proteins SLM-1 and SLM-2: SLM-1 is a Src substrate during mitosis. Di Fruscio M, etal., Proc Natl Acad Sci U S A 1999 Mar 16;96(6):2710-5.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9433137   PMID:10332027   PMID:10349636   PMID:10377282   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12529443   PMID:12791695   PMID:14610273   PMID:15163637   PMID:15471878  
PMID:16033648   PMID:16141072   PMID:16141073   PMID:18287559   PMID:18321792   PMID:19916944   PMID:21873635   PMID:22196734   PMID:23637638   PMID:24194600   PMID:25505328   PMID:26758068  
PMID:27174676   PMID:27626380   PMID:27994030   PMID:28009295   PMID:28705898   PMID:28939043   PMID:31805436   PMID:32027825   PMID:32492419   PMID:34175335   PMID:34321999  


Genomics

Comparative Map Data
Khdrbs3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391568,800,155 - 68,973,064 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1568,800,269 - 68,973,060 (+)EnsemblGRCm39 Ensembl
GRCm381568,928,392 - 69,101,794 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1568,928,420 - 69,101,211 (+)EnsemblGRCm38mm10GRCm38
MGSCv371568,758,850 - 68,923,949 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361568,758,089 - 68,923,188 (+)NCBIMGSCv36mm8
Celera1570,448,119 - 70,614,372 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1530.36NCBI
KHDRBS3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388135,457,456 - 135,656,516 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8135,457,456 - 135,656,722 (+)EnsemblGRCh38hg38GRCh38
GRCh378136,469,699 - 136,659,853 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368136,538,898 - 136,729,031 (+)NCBINCBI36Build 36hg18NCBI36
Build 348136,538,897 - 136,729,028NCBI
Celera8132,642,482 - 132,831,891 (+)NCBICelera
Cytogenetic Map8q24.23NCBI
HuRef8131,785,096 - 131,974,740 (+)NCBIHuRef
CHM1_18136,511,650 - 136,701,600 (+)NCBICHM1_1
T2T-CHM13v2.08136,575,311 - 136,774,451 (+)NCBIT2T-CHM13v2.0
Khdrbs3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87102,726,628 - 102,884,545 (+)NCBIGRCr8
mRatBN7.27100,837,707 - 100,995,644 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7100,837,934 - 100,988,460 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7102,574,664 - 102,718,063 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07104,776,349 - 104,919,747 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07104,717,109 - 104,860,445 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07110,031,819 - 110,179,475 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7110,031,696 - 110,179,468 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07109,965,269 - 110,111,230 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47106,539,015 - 106,614,745 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17106,573,244 - 106,648,972 (+)NCBI
Celera797,331,783 - 97,474,062 (+)NCBICelera
Cytogenetic Map7q34NCBI
Khdrbs3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554619,751,057 - 9,915,943 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554619,751,057 - 9,926,211 (+)NCBIChiLan1.0ChiLan1.0
KHDRBS3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27152,848,167 - 153,047,670 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18128,381,719 - 128,580,807 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08132,131,953 - 132,331,310 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18135,084,505 - 135,282,770 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8135,084,505 - 135,282,766 (+)Ensemblpanpan1.1panPan2
KHDRBS3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11331,397,501 - 31,583,198 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1331,392,842 - 31,605,257 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1331,374,685 - 31,559,991 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01331,768,586 - 31,954,402 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1331,763,092 - 31,954,398 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11331,490,283 - 31,675,703 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01331,584,104 - 31,769,857 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01331,934,428 - 32,120,024 (+)NCBIUU_Cfam_GSD_1.0
Khdrbs3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053036,806,218 - 6,977,811 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647014,239,841 - 14,403,916 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647014,232,114 - 14,403,910 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KHDRBS3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl46,282,076 - 6,446,389 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.146,289,577 - 6,446,494 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.246,127,960 - 6,284,514 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KHDRBS3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18129,814,228 - 130,044,479 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8129,911,686 - 130,035,258 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603910,035,579 - 10,236,195 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Khdrbs3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473520,425,148 - 20,586,626 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473520,415,996 - 20,586,632 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Khdrbs3
6617 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:157
Count of miRNA genes:118
Interacting mature miRNAs:139
Transcripts:ENSMUST00000022954
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401902Sicd2_mseizure-induced cell death 2 (mouse)Not determined15347438971197538Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
26884412Bzwq10_mbi-zygomatic width QTL 10, 10 week (mouse)15612948171471849Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15612948172471849Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15612948175871849Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15612948176384200Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15692948175871849Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15692948175871849Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
26884392Humsd8_mhumerus midshaft diameter 8, 16 week (mouse)152930014676084200Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
1301324Cdif_mcolor difference (mouse)Not determined153597590669976019Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
1301580Hrq2_mheart rate quantitative locus 2 (mouse)Not determined153910039573100593Mouse
4142459Lfnq3_mlung function QTL 3 (mouse)Not determined4017702272372580Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154455331378553437Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154485914178859281Mouse
26884420Cvht6_mcranial vault height 6, 10 week (mouse)154556339669171849Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
1301779Dpml_mdopamine loss (mouse)Not determined155100469476794493Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse

Markers in Region
Khdrbs3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15D3UniSTS
cM Map1537.5UniSTS
D15Mit3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381568,934,666 - 68,934,802UniSTSGRCm38
MGSCv371568,765,096 - 68,765,232UniSTSGRCm37
Celera1570,454,325 - 70,454,461UniSTS
Cytogenetic Map15D3UniSTS
cM Map1539.6UniSTS
Whitehead Genetic1529.5UniSTS
Whitehead_YAC15 UniSTS
Khdrbs3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15D3UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000022954   ⟹   ENSMUSP00000022954
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1568,800,269 - 68,965,361 (+)Ensembl
GRCm38.p6 Ensembl1568,928,420 - 69,093,512 (+)Ensembl
RefSeq Acc Id: ENSMUST00000229234   ⟹   ENSMUSP00000154887
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1568,800,570 - 68,973,060 (+)Ensembl
GRCm38.p6 Ensembl1568,928,721 - 69,101,211 (+)Ensembl
RefSeq Acc Id: ENSMUST00000229534
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1568,800,562 - 68,867,467 (+)Ensembl
GRCm38.p6 Ensembl1568,928,713 - 68,995,618 (+)Ensembl
RefSeq Acc Id: ENSMUST00000229683   ⟹   ENSMUSP00000155136
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1568,800,281 - 68,973,060 (+)Ensembl
GRCm38.p6 Ensembl1568,928,432 - 69,101,211 (+)Ensembl
RefSeq Acc Id: ENSMUST00000230073   ⟹   ENSMUSP00000155218
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1568,801,917 - 68,896,614 (+)Ensembl
GRCm38.p6 Ensembl1568,930,068 - 69,024,765 (+)Ensembl
RefSeq Acc Id: ENSMUST00000230847   ⟹   ENSMUSP00000154871
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1568,800,546 - 68,965,359 (+)Ensembl
GRCm38.p6 Ensembl1568,928,697 - 69,093,510 (+)Ensembl
RefSeq Acc Id: NM_001411210   ⟹   NP_001398139
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391568,801,215 - 68,965,368 (+)NCBI
RefSeq Acc Id: NM_010158   ⟹   NP_034288
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391568,800,252 - 68,965,368 (+)NCBI
GRCm381568,928,420 - 69,093,519 (+)NCBI
MGSCv371568,758,850 - 68,923,949 (+)RGD
Celera1570,448,119 - 70,614,372 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_177197
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391568,800,252 - 68,973,064 (+)NCBI
RefSeq Acc Id: NR_177198
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391568,801,215 - 68,973,064 (+)NCBI
RefSeq Acc Id: XM_036159122   ⟹   XP_036015015
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391568,800,155 - 68,959,535 (+)NCBI
Sequence:
RefSeq Acc Id: NP_034288   ⟸   NM_010158
- Peptide Label: isoform 1
- UniProtKB: O88624 (UniProtKB/Swiss-Prot),   Q9R226 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000154871   ⟸   ENSMUST00000230847
RefSeq Acc Id: ENSMUSP00000155218   ⟸   ENSMUST00000230073
RefSeq Acc Id: ENSMUSP00000022954   ⟸   ENSMUST00000022954
RefSeq Acc Id: ENSMUSP00000155136   ⟸   ENSMUST00000229683
RefSeq Acc Id: ENSMUSP00000154887   ⟸   ENSMUST00000229234
RefSeq Acc Id: XP_036015015   ⟸   XM_036159122
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001398139   ⟸   NM_001411210
- Peptide Label: isoform 2
Protein Domains
K Homology   KH   KHDRBS Qua1   Sam68 tyrosine-rich

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R226-F1-model_v2 AlphaFold Q9R226 1-346 view protein structure

Promoters
RGD ID:6826126
Promoter ID:MM_KWN:18670
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Liver
Transcripts:UC007WBF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361568,758,444 - 68,758,944 (+)MPROMDB
RGD ID:6825997
Promoter ID:MM_KWN:18671
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC007WBG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361568,859,801 - 68,860,301 (+)MPROMDB
RGD ID:8683900
Promoter ID:EPDNEW_M19981
Type:initiation region
Name:Khdrbs3_1
Description:Mus musculus KH domain containing, RNA binding, signal transductionassociated 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381568,928,439 - 68,928,499EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1313312 AgrOrtholog
Ensembl Genes ENSMUSG00000022332 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000022954 ENTREZGENE
  ENSMUST00000022954.7 UniProtKB/Swiss-Prot
  ENSMUST00000229234.2 UniProtKB/Swiss-Prot
  ENSMUST00000229683.2 UniProtKB/Swiss-Prot
  ENSMUST00000230073.2 UniProtKB/TrEMBL
  ENSMUST00000230847.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro BBP-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Qua1_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sam68-YY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13992 UniProtKB/Swiss-Prot
MGD MGI:1313312 ENTREZGENE
NCBI Gene 13992 ENTREZGENE
PANTHER KH DOMAIN-CONTAINING, RNA-BINDING, SIGNAL TRANSDUCTION-ASSOCIATED PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11208 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam KH_1 UniProtKB/TrEMBL
  Qua1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sam68-YY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB KHDRBS3 RGD
PhenoGen Khdrbs3 PhenoGen
SMART SM00322 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2R8VHM1_MOUSE UniProtKB/TrEMBL
  A0A2R8VJR4_MOUSE UniProtKB/TrEMBL
  KHDR3_MOUSE UniProtKB/Swiss-Prot
  O88624 ENTREZGENE
  Q9R226 ENTREZGENE
UniProt Secondary O88624 UniProtKB/Swiss-Prot