Cd82 (CD82 molecule) - Rat Genome Database

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Gene: Cd82 (CD82 molecule) Ictidomys tridecemlineatus
Analyze
Symbol: Cd82
Name: CD82 molecule
RGD ID: 124780667
Description: ASSOCIATED WITH breast carcinoma (ortholog); cervical squamous cell carcinoma (ortholog); endometrial carcinoma (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CD82 antigen; CD82-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494721,960,790 - 21,973,529 (-)NCBIHiC_Itri_2


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cd82
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494721,960,790 - 21,973,529 (-)NCBIHiC_Itri_2
CD82
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381144,564,409 - 44,620,358 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1144,564,427 - 44,620,363 (+)EnsemblGRCh38hg38GRCh38
GRCh371144,587,213 - 44,641,908 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361144,543,717 - 44,597,915 (+)NCBINCBI36Build 36hg18NCBI36
Celera1144,734,291 - 44,788,479 (+)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1144,296,423 - 44,350,592 (+)NCBIHuRef
CHM1_11144,585,957 - 44,640,111 (+)NCBICHM1_1
T2T-CHM13v2.01144,720,425 - 44,776,379 (+)NCBIT2T-CHM13v2.0
Cd82
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39293,249,447 - 93,293,295 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl293,249,456 - 93,293,485 (-)EnsemblGRCm39 Ensembl
GRCm38293,419,102 - 93,462,950 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl293,419,111 - 93,463,140 (-)EnsemblGRCm38mm10GRCm38
MGSCv37293,259,269 - 93,303,103 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36293,219,951 - 93,263,335 (-)NCBIMGSCv36mm8
Celera294,814,780 - 94,859,821 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map251.62NCBI
Cd82
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8399,842,748 - 99,887,298 (-)NCBIGRCr8
mRatBN7.2379,387,361 - 79,431,847 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl379,385,887 - 79,431,809 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx382,861,325 - 82,905,239 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0391,460,386 - 91,504,299 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0389,311,775 - 89,356,142 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0382,324,344 - 82,368,846 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl382,324,354 - 82,368,357 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0389,026,114 - 89,070,616 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4377,831,771 - 77,875,764 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1377,728,200 - 77,772,102 (-)NCBI
Celera378,589,536 - 78,633,414 (-)NCBICelera
Cytogenetic Map3q31NCBI
Cd82
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554223,033,133 - 3,052,153 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554223,035,887 - 3,069,298 (-)NCBIChiLan1.0ChiLan1.0
CD82
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2946,780,583 - 46,836,160 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11146,786,918 - 46,842,472 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01144,526,010 - 44,581,560 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11145,020,362 - 45,075,876 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1145,020,319 - 45,075,876 (+)Ensemblpanpan1.1panPan2
CD82
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11844,658,414 - 44,707,897 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1844,659,180 - 44,706,768 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.01845,317,202 - 45,369,506 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1845,317,220 - 45,368,392 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11844,800,179 - 44,851,496 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01844,353,829 - 44,406,031 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01845,086,983 - 45,139,553 (-)NCBIUU_Cfam_GSD_1.0
CD82
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl217,750,660 - 17,803,126 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1217,751,153 - 17,803,172 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2219,249,749 - 19,264,391 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD82
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1120,736,216 - 20,793,943 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl120,735,287 - 20,763,160 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038117,969,772 - 118,024,761 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd82
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247673,556,128 - 3,589,956 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_040283728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_040283728   ⟹   XP_040139662
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494721,960,790 - 21,973,529 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040139662 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3285425 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040139662   ⟸   XM_040283728


Additional Information

Database Acc Id Source(s)
NCBI Gene Cd82 ENTREZGENE