CD82 (CD82 molecule) - Rat Genome Database

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Gene: CD82 (CD82 molecule) Sus scrofa
Analyze
Symbol: CD82
Name: CD82 molecule
RGD ID: 14091083
Description: ASSOCIATED WITH breast carcinoma (ortholog); cervical squamous cell carcinoma (ortholog); endometrial carcinoma (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CD82 antigen; lymphocyte cell-surface protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl217,750,660 - 17,803,126 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1217,751,153 - 17,803,172 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2219,249,749 - 19,264,391 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:18855249   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CD82
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl217,750,660 - 17,803,126 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1217,751,153 - 17,803,172 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2219,249,749 - 19,264,391 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CD82
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381144,564,409 - 44,620,358 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1144,564,427 - 44,620,358 (+)EnsemblGRCh38hg38GRCh38
GRCh371144,587,213 - 44,641,908 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361144,543,717 - 44,597,915 (+)NCBINCBI36Build 36hg18NCBI36
Celera1144,734,291 - 44,788,479 (+)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1144,296,423 - 44,350,592 (+)NCBIHuRef
CHM1_11144,585,957 - 44,640,111 (+)NCBICHM1_1
T2T-CHM13v2.01144,720,425 - 44,776,379 (+)NCBIT2T-CHM13v2.0
Cd82
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39293,249,447 - 93,293,295 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl293,249,456 - 93,293,485 (-)EnsemblGRCm39 Ensembl
GRCm38293,419,102 - 93,462,950 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl293,419,111 - 93,463,140 (-)EnsemblGRCm38mm10GRCm38
MGSCv37293,259,269 - 93,303,103 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36293,219,951 - 93,263,335 (-)NCBIMGSCv36mm8
Celera294,814,780 - 94,859,821 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map251.62NCBI
Cd82
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8399,842,748 - 99,887,298 (-)NCBIGRCr8
mRatBN7.2379,387,361 - 79,431,847 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl379,385,887 - 79,431,809 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx382,861,325 - 82,905,239 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0391,460,386 - 91,504,299 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0389,311,775 - 89,356,142 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0382,324,344 - 82,368,846 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl382,324,354 - 82,368,357 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0389,026,114 - 89,070,616 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4377,831,771 - 77,875,764 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1377,728,200 - 77,772,102 (-)NCBI
Celera378,589,536 - 78,633,414 (-)NCBICelera
Cytogenetic Map3q31NCBI
Cd82
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554223,033,133 - 3,052,153 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554223,035,887 - 3,069,298 (-)NCBIChiLan1.0ChiLan1.0
CD82
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2946,780,583 - 46,836,160 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11146,786,918 - 46,842,472 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01144,526,010 - 44,581,560 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11145,020,362 - 45,075,876 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1145,020,319 - 45,075,876 (+)Ensemblpanpan1.1panPan2
CD82
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11844,658,414 - 44,707,897 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1844,659,180 - 44,706,768 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.01845,317,202 - 45,369,506 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1845,317,220 - 45,368,392 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11844,800,179 - 44,851,496 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01844,353,829 - 44,406,031 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01845,086,983 - 45,139,553 (-)NCBIUU_Cfam_GSD_1.0
Cd82
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494721,960,790 - 21,973,529 (-)NCBIHiC_Itri_2
CD82
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1120,736,216 - 20,793,943 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl120,735,287 - 20,763,160 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038117,969,772 - 118,024,761 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd82
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247673,556,128 - 3,589,956 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CD82
2170 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 3 2 1 3
Low 2 4 3 2 2 22 2
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000030279   ⟹   ENSSSCP00000019312
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl217,751,618 - 17,803,126 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000061801   ⟹   ENSSSCP00000036360
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl217,751,623 - 17,803,126 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000070283   ⟹   ENSSSCP00000061151
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl217,750,660 - 17,776,536 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000090313   ⟹   ENSSSCP00000064454
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl217,750,660 - 17,771,592 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000102451   ⟹   ENSSSCP00000075883
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl217,750,660 - 17,771,761 (-)Ensembl
RefSeq Acc Id: NM_001145218   ⟹   NP_001138690
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1217,751,153 - 17,803,172 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021077185   ⟹   XP_020932844
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1217,751,158 - 17,791,165 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001138690   ⟸   NM_001145218
- UniProtKB: B7ZEQ3 (UniProtKB/TrEMBL),   A0A4X1SFI7 (UniProtKB/TrEMBL),   I3L5L3 (UniProtKB/TrEMBL),   A0A480TR75 (UniProtKB/TrEMBL),   A0A481BYU7 (UniProtKB/TrEMBL),   A0A8D0K922 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932844   ⟸   XM_021077185
- Peptide Label: isoform X1
- UniProtKB: A0A4X1SFI7 (UniProtKB/TrEMBL),   I3L5L3 (UniProtKB/TrEMBL),   B7ZEQ3 (UniProtKB/TrEMBL),   A0A480TR75 (UniProtKB/TrEMBL),   A0A481BYU7 (UniProtKB/TrEMBL),   A0A8D0K922 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000019312   ⟸   ENSSSCT00000030279
RefSeq Acc Id: ENSSSCP00000064454   ⟸   ENSSSCT00000090313
RefSeq Acc Id: ENSSSCP00000061151   ⟸   ENSSSCT00000070283
RefSeq Acc Id: ENSSSCP00000036360   ⟸   ENSSSCT00000061801
RefSeq Acc Id: ENSSSCP00000075883   ⟸   ENSSSCT00000102451


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000029521 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005039822 UniProtKB/TrEMBL
  ENSSSCG00025007877 UniProtKB/TrEMBL
  ENSSSCG00030043995 UniProtKB/TrEMBL
  ENSSSCG00035035661 UniProtKB/TrEMBL
  ENSSSCG00045034412 UniProtKB/TrEMBL
  ENSSSCG00065075114 UniProtKB/TrEMBL
  ENSSSCG00070000571 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000030279 ENTREZGENE
  ENSSSCT00000030279.4 UniProtKB/TrEMBL
  ENSSSCT00000061801.2 UniProtKB/TrEMBL
  ENSSSCT00000070283 ENTREZGENE
  ENSSSCT00000070283.2 UniProtKB/TrEMBL
  ENSSSCT00000090313.2 UniProtKB/TrEMBL
  ENSSSCT00000102451.1 UniProtKB/TrEMBL
  ENSSSCT00005064170.1 UniProtKB/TrEMBL
  ENSSSCT00005064191.1 UniProtKB/TrEMBL
  ENSSSCT00025010495.1 UniProtKB/TrEMBL
  ENSSSCT00025010504.1 UniProtKB/TrEMBL
  ENSSSCT00025010519.1 UniProtKB/TrEMBL
  ENSSSCT00030061407.1 UniProtKB/TrEMBL
  ENSSSCT00030061435.1 UniProtKB/TrEMBL
  ENSSSCT00030061466.1 UniProtKB/TrEMBL
  ENSSSCT00035047276.1 UniProtKB/TrEMBL
  ENSSSCT00035047280.1 UniProtKB/TrEMBL
  ENSSSCT00035047288.1 UniProtKB/TrEMBL
  ENSSSCT00045058914.1 UniProtKB/TrEMBL
  ENSSSCT00045059008.1 UniProtKB/TrEMBL
  ENSSSCT00045059055.1 UniProtKB/TrEMBL
  ENSSSCT00065103569.1 UniProtKB/TrEMBL
  ENSSSCT00065103593.1 UniProtKB/TrEMBL
  ENSSSCT00065103610.1 UniProtKB/TrEMBL
  ENSSSCT00065103622.1 UniProtKB/TrEMBL
  ENSSSCT00070001100.1 UniProtKB/TrEMBL
  ENSSSCT00070001105.1 UniProtKB/TrEMBL
  ENSSSCT00070001120.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1450.10 UniProtKB/TrEMBL
InterPro Tetraspanin UniProtKB/TrEMBL
  Tetraspanin/Peripherin UniProtKB/TrEMBL
  Tetraspanin_CS UniProtKB/TrEMBL
  Tetraspanin_EC2_sf UniProtKB/TrEMBL
KEGG Report ssc:100270689 UniProtKB/TrEMBL
NCBI Gene CD82 ENTREZGENE
PANTHER CD82 ANTIGEN UniProtKB/TrEMBL
  PTHR19282 UniProtKB/TrEMBL
Pfam Tetraspanin UniProtKB/TrEMBL
PIRSF Tetraspanin UniProtKB/TrEMBL
PRINTS TMFOUR UniProtKB/TrEMBL
PROSITE TM4_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48652 UniProtKB/TrEMBL
UniProt A0A286ZXL8_PIG UniProtKB/TrEMBL
  A0A480TR75 ENTREZGENE, UniProtKB/TrEMBL
  A0A481BYU7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SFI7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SFJ9_PIG UniProtKB/TrEMBL
  A0A5G2QGM3_PIG UniProtKB/TrEMBL
  A0A5G2QKD8_PIG UniProtKB/TrEMBL
  A0A8D0K922 ENTREZGENE
  A0A8D0QN64_PIG UniProtKB/TrEMBL
  A0A8D0X272_PIG UniProtKB/TrEMBL
  A0A8D2A8L5_PIG UniProtKB/TrEMBL
  A0A8D2ADA2_PIG UniProtKB/TrEMBL
  A0A8W4F916_PIG UniProtKB/TrEMBL
  B7ZEQ3 ENTREZGENE, UniProtKB/TrEMBL
  I3L5L3 ENTREZGENE
UniProt Secondary A0A8D0K922 UniProtKB/TrEMBL
  I3L5L3 UniProtKB/TrEMBL
VGNC ID VGNC:86432 ENTREZGENE