Oxct1 (3-oxoacid CoA-transferase 1) - Rat Genome Database

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Gene: Oxct1 (3-oxoacid CoA-transferase 1) Ictidomys tridecemlineatus
Analyze
Symbol: Oxct1
Name: 3-oxoacid CoA-transferase 1
RGD ID: 12471921
Description: ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); succinyl-CoA:3-oxo-acid CoA-transferase activity (ortholog); INVOLVED IN adipose tissue development (ortholog); heart development (ortholog); ketone body catabolic process (ortholog); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; ASSOCIATED WITH Burns (ortholog); carbohydrate metabolic disorder (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213230,314,635 - 230,446,563 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936518924,840 - 1,057,201 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Oxct1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213230,314,635 - 230,446,563 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936518924,840 - 1,057,201 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OXCT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38541,730,065 - 41,870,425 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl541,730,065 - 41,870,425 (-)EnsemblGRCh38hg38GRCh38
GRCh37541,730,167 - 41,870,527 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36541,765,924 - 41,906,548 (-)NCBINCBI36Build 36hg18NCBI36
Build 34541,765,924 - 41,906,360NCBI
Celera541,618,583 - 41,759,082 (-)NCBICelera
Cytogenetic Map5p13.1NCBI
HuRef541,683,008 - 41,823,471 (-)NCBIHuRef
CHM1_1541,732,020 - 41,872,646 (-)NCBICHM1_1
T2T-CHM13v2.0541,986,435 - 42,126,806 (-)NCBIT2T-CHM13v2.0
Oxct1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39154,055,910 - 4,184,826 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl154,055,865 - 4,184,826 (+)EnsemblGRCm39 Ensembl
GRCm38154,026,428 - 4,155,344 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl154,026,383 - 4,155,344 (+)EnsemblGRCm38mm10GRCm38
MGSCv37153,976,428 - 4,105,344 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36153,976,749 - 4,104,101 (+)NCBIMGSCv36mm8
Celera153,888,106 - 4,016,714 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map151.86NCBI
Oxct1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8254,963,964 - 55,112,303 (+)NCBIGRCr8
mRatBN7.2253,236,370 - 53,384,715 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl253,236,368 - 53,384,714 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx260,341,203 - 60,475,958 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0258,399,945 - 58,534,694 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0253,425,153 - 53,555,506 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0253,859,738 - 54,007,733 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl253,859,737 - 54,007,756 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0272,891,713 - 73,037,617 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4253,189,358 - 53,217,848 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera248,914,408 - 49,050,216 (+)NCBICelera
Cytogenetic Map2q16NCBI
Oxct1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542625,885,518 - 26,003,743 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542625,885,518 - 25,998,187 (-)NCBIChiLan1.0ChiLan1.0
OXCT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2468,480,013 - 68,619,508 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1566,633,110 - 66,773,139 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0568,528,765 - 68,668,305 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1573,571,227 - 73,710,316 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl573,563,758 - 73,710,316 (+)Ensemblpanpan1.1panPan2
OXCT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1467,709,846 - 67,841,737 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl467,527,531 - 67,841,518 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha467,392,579 - 67,524,955 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0468,221,131 - 68,355,789 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl468,221,108 - 68,382,024 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1467,962,898 - 68,117,238 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0468,093,650 - 68,227,696 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0468,633,289 - 68,767,738 (+)NCBIUU_Cfam_GSD_1.0
OXCT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1626,512,401 - 26,659,808 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11626,514,497 - 26,659,739 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21627,702,633 - 27,729,489 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21627,840,670 - 27,923,998 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OXCT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1440,477,983 - 40,620,971 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607130,913,067 - 31,057,690 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Oxct1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475913,093,408 - 13,247,244 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475913,093,409 - 13,247,244 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005325615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_005325615   ⟹   XP_005325672
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213230,314,635 - 230,446,563 (-)NCBI
SpeTri2.0NW_004936518924,840 - 1,057,201 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005325672 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007413.3
  ENSSTOP00000029626.1
GenBank Protein KAG3266857 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005325672   ⟸   XM_005325615
- UniProtKB: A0A287D7Y4 (UniProtKB/TrEMBL),   I3MBB9 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008271 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008273.3 UniProtKB/TrEMBL
  ENSSTOT00000039310.1 UniProtKB/TrEMBL
Gene3D-CATH Glutaconate Coenzyme A-transferase UniProtKB/TrEMBL
InterPro 3-oxoacid_CoA-transf_A UniProtKB/TrEMBL
  3-oxoacid_CoA-transf_B UniProtKB/TrEMBL
  3-oxoacid_CoA-transferase UniProtKB/TrEMBL
  CoA_trans_fam_I UniProtKB/TrEMBL
  CoA_transf_AS UniProtKB/TrEMBL
  CoA_transf_BS UniProtKB/TrEMBL
  NagB/RpiA_transferase-like UniProtKB/TrEMBL
NCBI Gene Oxct1 ENTREZGENE
PANTHER PTHR13707 UniProtKB/TrEMBL
  SUCCINYL-COA:3-KETOACID COENZYME A TRANSFERASE 1, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam CoA_trans UniProtKB/TrEMBL
PIRSF SCOT-t UniProtKB/TrEMBL
PROSITE COA_TRANSF_1 UniProtKB/TrEMBL
  COA_TRANSF_2 UniProtKB/TrEMBL
SMART CoA_trans UniProtKB/TrEMBL
Superfamily-SCOP SSF100950 UniProtKB/TrEMBL
UniProt A0A287D7Y4 ENTREZGENE, UniProtKB/TrEMBL
  I3MBB9 ENTREZGENE, UniProtKB/TrEMBL