Symbol:
Fbxl4
Name:
F-box and leucine rich repeat protein 4
RGD ID:
12462124
Description:
ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (inferred); INVOLVED IN autophagy of mitochondrion (inferred); negative regulation of mitophagy (inferred); SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (inferred); ASSOCIATED WITH genetic disease (ortholog); Leigh disease (ortholog); mitochondrial DNA depletion syndrome (ortholog); FOUND IN mitochondrion (ortholog)
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
F-box/LRR-repeat protein 4
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Fbxl4 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
FBXL4 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 6 98,868,535 - 98,947,946 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 6 98,868,535 - 98,948,006 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 6 99,316,411 - 99,395,822 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 6 99,428,322 - 99,502,570 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 6 99,428,321 - 99,502,570 NCBI Celera 6 99,965,788 - 100,040,008 (-) NCBI Celera Cytogenetic Map 6 q16.1-q16.2 NCBI HuRef 6 96,760,379 - 96,835,106 (-) NCBI HuRef CHM1_1 6 99,584,542 - 99,658,828 (-) NCBI CHM1_1 T2T-CHM13v2.0 6 100,042,904 - 100,122,314 (-) NCBI T2T-CHM13v2.0
Fbxl4 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 4 22,357,526 - 22,434,091 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 4 22,357,543 - 22,434,091 (+) Ensembl GRCm39 Ensembl GRCm38 4 22,357,526 - 22,434,091 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 4 22,357,543 - 22,434,091 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 4 22,284,712 - 22,361,193 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 4 22,448,400 - 22,524,881 (+) NCBI MGSCv36 mm8 Celera 4 22,111,884 - 22,188,205 (+) NCBI Celera Cytogenetic Map 4 A3 NCBI cM Map 4 9.69 NCBI
Fbxl4 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 5 40,752,513 - 40,826,154 (+) NCBI GRCr8 mRatBN7.2 5 35,955,801 - 36,029,446 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 5 35,955,812 - 36,029,443 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 5 38,081,930 - 38,155,709 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 5 39,674,526 - 39,748,301 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 5 39,614,187 - 39,687,968 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 5 36,555,061 - 36,628,920 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 5 36,555,109 - 36,629,689 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 5 41,196,912 - 41,270,903 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 5 37,156,876 - 37,230,228 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 5 37,157,055 - 37,230,404 (+) NCBI Celera 5 34,966,228 - 35,039,999 (+) NCBI Celera Cytogenetic Map 5 q21 NCBI
Fbxl4 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955411 24,757,445 - 24,814,643 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955411 24,757,445 - 24,814,642 (-) NCBI ChiLan1.0 ChiLan1.0
FBXL4 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 5 118,922,871 - 118,996,545 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 6 116,801,917 - 116,877,758 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 6 96,717,103 - 96,790,932 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 6 100,599,381 - 100,661,249 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 6 100,599,390 - 100,661,249 (-) Ensembl panpan1.1 panPan2
FBXL4 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 12 57,139,183 - 57,211,157 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 12 57,139,491 - 57,211,137 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 12 56,897,651 - 56,975,979 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 12 57,960,791 - 58,039,209 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 12 57,960,791 - 58,039,197 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 12 57,320,719 - 57,399,019 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 12 57,164,097 - 57,242,411 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 12 57,408,790 - 57,487,147 (-) NCBI UU_Cfam_GSD_1.0
FBXL4 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 1 65,872,123 - 65,935,703 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 1 65,872,119 - 65,936,442 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 1 74,422,380 - 74,485,593 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
FBXL4 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 13 74,916,756 - 74,993,959 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 13 74,916,869 - 74,997,462 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666040 47,249,024 - 47,326,291 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Fbxl4 (Heterocephalus glaber - naked mole-rat)
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Ensembl Acc Id:
ENSSTOT00000002522 ⟹ ENSSTOP00000002255
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source SpeTri2.0 Ensembl NW_004936651 530,197 - 609,417 (-) Ensembl
Ensembl Acc Id:
ENSSTOT00000022973 ⟹ ENSSTOP00000015822
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source SpeTri2.0 Ensembl NW_004936651 530,197 - 609,417 (-) Ensembl
RefSeq Acc Id:
XM_005335875 ⟹ XP_005335932
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024404946 92,074,874 - 92,153,958 (-) NCBI SpeTri2.0 NW_004936651 530,296 - 609,443 (-) NCBI
Sequence:
GGCCCCGCCCCGAGTCCCGCTCCTCCTCCAGCCCCGCCCCTCCCCGCGGCCTCCGTGTCTTCCTTCCGGGTCGCGCTGGGCCGGGCTTGCCGCGGTGGTGCCGCAGCGCGAGAGCCTGGGAGCGGCCT CGCGCCCAGGCCTTCCCGCGCCTCCTGGTCGGGGGTGAAGCCCTCGGCGCGTGCCACTCCCGGACCCTGCAGGGTAAAATAATGTCACATTTTAGCATTTGTACCTGAAAGCAGCAAGCAGATTTCAG GCCACATGGATGAGTGCCAGCTTCTACATTTCCCTTGTGTATCCTGTGACCATTCTATCTGGGAACATCCTTCAAAGAGTTCTTGCATCTTACTGAGGACACCTGACCTTTTGAAGCTTCATAATTCA CATCTAGATGTCACCGGTCTTTCCCATGTTAACAGTTTTGACTATGTTTTATTATATGTGCCTTCGGCGCCGAGCCAGGACAGCTACAAGAGGAGAAATGATGAACAGCCATAGAACTATAGAATCAA ACAGCCGGACTTCCCCTCTCAATGCAGAGGTGGTCCAATATGCCAAAGAAGTAGTGGATTTCAGTTCCCATTATGGAAGCGAGAATAGTATGTCCTATACCATGTGGAATTTGGCAGGTGTACCAAAT GTATTCCCAAGTTCTGGTGACTTTACTCAGACTGCTGTGTTTCGAACTTATGGAACGTGGTGGGATCAGTGTCCTAGTGCTTCCTTGCCATTCAAGAGGACACCGCCTAATTTTCAGAGCCAAGACTA TGTGGAACTTACGTTTGAACAACAGGTATATCCTACAGCTGTTCATGTTCTGGAAACCTATCATCCTGGAGCAGTCATCAGAATTTTGGCTTGTTCTGCAAATCCATATTCTCCAAGTCCCCCAGCTG AAGTAAGATGGGAGATTCTTTGGTCAGAGAGACCTACGAAGGTGAATGCTTCCCAAGCTCGTCAGTTTAAACCTTGTATTAAGCAGATAAATTTTCCCACAAATCTTATTCGACTGGAAATAAATAGT TCTCTTCTGGATTATTACACTGAATTAGATGCAGTTGTGCTACATGGTATGAAGGACAAGCCAGTGCTTTCTCTTAAGACTTCACTTATTGACATGAATGATCTAGAAGATGATGACTATGAAGAAGA GGATGGTTGTGGAATGGACAATCTTAACAAAAAATTTAGCAGTACTGCCCTCAAGGAAGGGCCAAATAATGGATATTTTGATAAATTACCATATGAGCTTATTCAACTGATTCTGAATCATCTTACAC TACCAGACCTGTGTAGATTAGCACAAACTTGCAAACTGCTACACCAGCATTGCTGTGATCCTCTACAGTATATCCACCTCAATCTGCAGCCATACTGGGCAAAGCTAAATGACACTTCTCTGGAGTTC CTGCAGGCTCGATGTACCCTTGTCCAGTGGCTCAATTTATCTTGGACTGGCAATAGAGGCTTCATCTCTGTTGCAGGATTTAGCAGGTTTCTGAAGGTTTGTGGATCTGAATTAGTACGCCTTGAATT ATCTTGCAGCCATTTCCTTAATGAAACTTGCTTGGAGGTTATTTCTGAGATGTGTCCAGATCTACAAGATTTAAATCTCTCATCCTGTGATAAATTACCACCTCAAGCATTCAACCACATTGCCAAGT TATGCAGCCTTAAACGACTTGTTCTCTATCGAACAAAAGTAGAGCAAACAGCACTGCTCAGCATTTTGAACTTCTGTTCAGAGCTTCAGCACCTCAGTTTGGGCAGTTGTGTAATGATTGAAGACTAT GATGTGATAGCTAGCATGATAGGAGCCAAGTGTAAAAAGCTCCGCACCCTGGATCTATGGAGATGTAAGAATATTACTGAGAATGGAATAGCGGAACTGGCTTCTGGATGTCCACTTCTGGAGGAACT TGACCTTGGCTGGTGTCCTACTCTGCAGAGCAGTACCGGGTGCTTCGCCAGATTGGCACGCCAGCTCCCAAACTTGCAAAAACTATTTCTTACAGCTAATAGATCTGTGTGTGACACAGATATAGAAG AACTTGCATGTAATTGTATCAGATTACGGCAACTGGACATATTAGGAACAAGAATGGTAAGTCCAGCATCCTTAAGAAAACTCCTGGAATCTTGTAAAGATCTTTCCTTACTTGATGTATCCTTCTGT TCACAGATTGATAACAGAGCTGTATTAGAACTGAATGCAACCTTTCCAAAAGTGTTCATAAAAAAGAGCTTTACTCAGTGACTTAATATATATTATGTCACTAAAAGTTGATATGCTTTGTAAGGATT TTATTTGGAGGTGGTTTTGTTGTATCTTTTGTTTTTATAATGGTGAGGATTAAGACATTTGTGGATTTTAAAGAAAAATATGAAATTTCCCATTGAATCAAGTAAAAAATGTGAAGAAATGTTCTCAC AAAATACTGTAAGCCATTTTCATCAAGAATATGTTAGTCACTGATATTATTTTTACTTTGTGTTAAAGTGGAATTATGTTTTAATCAATAATTGTGTTAATAAAAGAATAATATGAAAACATTTTAAC TTATTTTTAAAGGGATGCTTTAAGCATTAAAGTATCATGATATTTATGCAAAAATAAAGTTTTTTTCACACTTCAT
hide sequence
RefSeq Acc Id:
XM_040283128 ⟹ XP_040139062
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024404946 92,074,873 - 92,153,955 (-) NCBI
RefSeq Acc Id:
XM_040283129 ⟹ XP_040139063
Type:
CODING
Position:
Squirrel Assembly Chr Position (strand) Source HiC_Itri_2 NW_024404946 92,075,268 - 92,153,955 (-) NCBI
RefSeq Acc Id:
XP_005335932 ⟸ XM_005335875
- Peptide Label:
isoform X1
- UniProtKB:
I3M0K9 (UniProtKB/TrEMBL), I3MUM7 (UniProtKB/TrEMBL)
- Sequence:
MSPVFPMLTVLTMFYYMCLRRRARTATRGEMMNSHRTIESNSRTSPLNAEVVQYAKEVVDFSSHYGSENSMSYTMWNLAGVPNVFPSSGDFTQTAVFRTYGTWWDQCPSASLPFKRTPPNFQSQDYVE LTFEQQVYPTAVHVLETYHPGAVIRILACSANPYSPSPPAEVRWEILWSERPTKVNASQARQFKPCIKQINFPTNLIRLEINSSLLDYYTELDAVVLHGMKDKPVLSLKTSLIDMNDLEDDDYEEEDG CGMDNLNKKFSSTALKEGPNNGYFDKLPYELIQLILNHLTLPDLCRLAQTCKLLHQHCCDPLQYIHLNLQPYWAKLNDTSLEFLQARCTLVQWLNLSWTGNRGFISVAGFSRFLKVCGSELVRLELSC SHFLNETCLEVISEMCPDLQDLNLSSCDKLPPQAFNHIAKLCSLKRLVLYRTKVEQTALLSILNFCSELQHLSLGSCVMIEDYDVIASMIGAKCKKLRTLDLWRCKNITENGIAELASGCPLLEELDL GWCPTLQSSTGCFARLARQLPNLQKLFLTANRSVCDTDIEELACNCIRLRQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQIDNRAVLELNATFPKVFIKKSFTQ
hide sequence
RefSeq Acc Id:
XP_040139062 ⟸ XM_040283128
- Peptide Label:
isoform X2
RefSeq Acc Id:
XP_040139063 ⟸ XM_040283129
- Peptide Label:
isoform X3
Ensembl Acc Id:
ENSSTOP00000002255 ⟸ ENSSTOT00000002522
Ensembl Acc Id:
ENSSTOP00000015822 ⟸ ENSSTOT00000022973