Fbxl4 (F-box and leucine rich repeat protein 4) - Rat Genome Database

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Gene: Fbxl4 (F-box and leucine rich repeat protein 4) Ictidomys tridecemlineatus
Analyze
Symbol: Fbxl4
Name: F-box and leucine rich repeat protein 4
RGD ID: 12462124
Description: ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (inferred); INVOLVED IN autophagy of mitochondrion (inferred); negative regulation of mitophagy (inferred); SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (inferred); ASSOCIATED WITH genetic disease (ortholog); Leigh disease (ortholog); mitochondrial DNA depletion syndrome (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: F-box/LRR-repeat protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494692,074,873 - 92,153,958 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936651530,197 - 609,417 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936651530,296 - 609,443 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fbxl4Squirrelgenetic disease  ISOFBXL4 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:23993193 more ...
Fbxl4SquirrelLeigh disease  ISOFBXL4 (Homo sapiens)8554872ClinVar Annotator: match by term: Leigh syndromeClinVarPMID:23993193 more ...
Fbxl4Squirrelmitochondrial DNA depletion syndrome  ISOFBXL4 (Homo sapiens)8554872ClinVar Annotator: match by term: Mitochondrial DNA depletion syndromeClinVarPMID:23993193 more ...
Fbxl4Squirrelmitochondrial DNA depletion syndrome 13  ISOFBXL4 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16199547 more ...
Fbxl4Squirrelmitochondrial encephalomyopathy  ISOFBXL4 (Homo sapiens)8554872ClinVar Annotator: match by term: Mitochondrial encephalomyopathyClinVarPMID:23993194 more ...
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fbxl4Squirrelmitochondrial DNA depletion syndrome 13  ISOFBXL4 (Homo sapiens)7240710 OMIM 


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fbxl4Squirrelautophagy of mitochondrion acts_upstream_of_or_withinIEAUniProtKB:Q8BH70 more ...150520179 EnsemblGO_REF:0000107
Fbxl4Squirrelnegative regulation of mitophagy involved_inIEAUniProtKB:Q9UKA2 and ensembl:ENSP00000358247150520179 EnsemblGO_REF:0000107
Fbxl4SquirrelSCF-dependent proteasomal ubiquitin-dependent protein catabolic process involved_inIEAPANTHER:PTN000565379150520179 TreeGrafterGO_REF:0000118

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fbxl4Squirrelmitochondrial intermembrane space located_inIEAUniProtKB:Q9UKA2 and ensembl:ENSP00000358247150520179 EnsemblGO_REF:0000107
Fbxl4Squirrelmitochondrial outer membrane is_active_inIEAUniProtKB:Q9UKA2 and ensembl:ENSP00000358247150520179 EnsemblGO_REF:0000107
Fbxl4Squirrelmitochondrion located_inISOFBXL4 (Homo sapiens)9068941 PMID:34800366FlyBasePMID:34800366
Fbxl4Squirrelnuclear speck located_inIEAUniProtKB:Q9UKA2 and ensembl:ENSP00000358247150520179 EnsemblGO_REF:0000107
Fbxl4SquirrelSCF ubiquitin ligase complex part_ofIEAPANTHER:PTN000565379150520179 TreeGrafterGO_REF:0000118

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fbxl4Squirrelprotein binding enablesISOUniProtKB:O14773 and UniProtKB:P50570-29068941 PMID:32814053IntActPMID:32814053
Fbxl4Squirrelubiquitin-like ligase-substrate adaptor activity enablesIEAUniProtKB:Q9UKA2 and ensembl:ENSP00000358247150520179 EnsemblGO_REF:0000107

PMID:22301074   PMID:30032202  



Fbxl4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494692,074,873 - 92,153,958 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936651530,197 - 609,417 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936651530,296 - 609,443 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38698,868,535 - 98,947,946 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl698,868,535 - 98,948,006 (-)EnsemblGRCh38hg38GRCh38
GRCh37699,316,411 - 99,395,822 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36699,428,322 - 99,502,570 (-)NCBINCBI36Build 36hg18NCBI36
Build 34699,428,321 - 99,502,570NCBI
Celera699,965,788 - 100,040,008 (-)NCBICelera
Cytogenetic Map6q16.1-q16.2NCBI
HuRef696,760,379 - 96,835,106 (-)NCBIHuRef
CHM1_1699,584,542 - 99,658,828 (-)NCBICHM1_1
T2T-CHM13v2.06100,042,904 - 100,122,314 (-)NCBIT2T-CHM13v2.0
Fbxl4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39422,357,526 - 22,434,091 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl422,357,543 - 22,434,091 (+)EnsemblGRCm39 Ensembl
GRCm38422,357,526 - 22,434,091 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl422,357,543 - 22,434,091 (+)EnsemblGRCm38mm10GRCm38
MGSCv37422,284,712 - 22,361,193 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36422,448,400 - 22,524,881 (+)NCBIMGSCv36mm8
Celera422,111,884 - 22,188,205 (+)NCBICelera
Cytogenetic Map4A3NCBI
cM Map49.69NCBI
Fbxl4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8540,752,513 - 40,826,154 (+)NCBIGRCr8
mRatBN7.2535,955,801 - 36,029,446 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl535,955,812 - 36,029,443 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx538,081,930 - 38,155,709 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0539,674,526 - 39,748,301 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0539,614,187 - 39,687,968 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0536,555,061 - 36,628,920 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl536,555,109 - 36,629,689 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0541,196,912 - 41,270,903 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4537,156,876 - 37,230,228 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1537,157,055 - 37,230,404 (+)NCBI
Celera534,966,228 - 35,039,999 (+)NCBICelera
Cytogenetic Map5q21NCBI
Fbxl4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541124,757,445 - 24,814,643 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541124,757,445 - 24,814,642 (-)NCBIChiLan1.0ChiLan1.0
FBXL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25118,922,871 - 118,996,545 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16116,801,917 - 116,877,758 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0696,717,103 - 96,790,932 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16100,599,381 - 100,661,249 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6100,599,390 - 100,661,249 (-)Ensemblpanpan1.1panPan2
FBXL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11257,139,183 - 57,211,157 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1257,139,491 - 57,211,137 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1256,897,651 - 56,975,979 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01257,960,791 - 58,039,209 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1257,960,791 - 58,039,197 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11257,320,719 - 57,399,019 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01257,164,097 - 57,242,411 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01257,408,790 - 57,487,147 (-)NCBIUU_Cfam_GSD_1.0
FBXL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl165,872,123 - 65,935,703 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1165,872,119 - 65,936,442 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2174,422,380 - 74,485,593 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FBXL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11374,916,756 - 74,993,959 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1374,916,869 - 74,997,462 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604047,249,024 - 47,326,291 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxl4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248106,185,748 - 6,239,481 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248106,172,807 - 6,238,045 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.






Ensembl Acc Id: ENSSTOT00000002522   ⟹   ENSSTOP00000002255
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936651530,197 - 609,417 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000022973   ⟹   ENSSTOP00000015822
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936651530,197 - 609,417 (-)Ensembl
RefSeq Acc Id: XM_005335875   ⟹   XP_005335932
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494692,074,874 - 92,153,958 (-)NCBI
SpeTri2.0NW_004936651530,296 - 609,443 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040283128   ⟹   XP_040139062
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494692,074,873 - 92,153,955 (-)NCBI
RefSeq Acc Id: XM_040283129   ⟹   XP_040139063
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494692,075,268 - 92,153,955 (-)NCBI
Protein RefSeqs XP_005335932 (Get FASTA)   NCBI Sequence Viewer  
  XP_040139062 (Get FASTA)   NCBI Sequence Viewer  
  XP_040139063 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000002255.3
  ENSSTOP00000015822.2
GenBank Protein KAG3289969 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005335932   ⟸   XM_005335875
- Peptide Label: isoform X1
- UniProtKB: I3M0K9 (UniProtKB/TrEMBL),   I3MUM7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040139062   ⟸   XM_040283128
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040139063   ⟸   XM_040283129
- Peptide Label: isoform X3
Ensembl Acc Id: ENSSTOP00000002255   ⟸   ENSSTOT00000002522
Ensembl Acc Id: ENSSTOP00000015822   ⟸   ENSSTOT00000022973
F-box



1 to 19 of 19 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000002526 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002522.3 UniProtKB/TrEMBL
  ENSSTOT00000022973.2 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro F-box-like_dom_sf UniProtKB/TrEMBL
  F-box_dom UniProtKB/TrEMBL
  Leu-rich_rpt_Cys-con_subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
NCBI Gene Fbxl4 ENTREZGENE
PANTHER F-BOX/LRR-REPEAT PROTEIN 4 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
PROSITE FBOX UniProtKB/TrEMBL
SMART LRR_CC UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/TrEMBL
  SSF81383 UniProtKB/TrEMBL
UniProt I3M0K9 ENTREZGENE, UniProtKB/TrEMBL
  I3MUM7 ENTREZGENE
UniProt Secondary I3MUM7 UniProtKB/TrEMBL
1 to 19 of 19 rows