LOC101956536 (C-type lectin domain family 2 member A) - Rat Genome Database

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Gene: LOC101956536 (C-type lectin domain family 2 member A) Ictidomys tridecemlineatus
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Symbol: LOC101956536
Name: C-type lectin domain family 2 member A
RGD ID: 12458653
Description: ENCODES a protein that exhibits identical protein binding (ortholog); natural killer cell lectin-like receptor binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN receptor clustering (ortholog); regulation of actin filament polymerization (ortholog); regulation of interleukin-2 production (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Clec2a
RGD Orthologs
Human
Mouse
Bonobo
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494597,452,283 - 97,455,414 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936902583,850 - 586,981 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
LOC101956536
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494597,452,283 - 97,455,414 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936902583,850 - 586,981 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLEC2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38129,877,742 - 9,932,370 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl129,898,673 - 9,932,370 (-)EnsemblGRCh38hg38GRCh38
GRCh371210,051,275 - 10,084,969 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36129,942,539 - 9,976,213 (-)NCBINCBI36Build 36hg18NCBI36
Build 34129,942,538 - 9,976,213NCBI
Celera1215,227,207 - 15,246,360 (-)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef129,808,730 - 9,827,882 (-)NCBIHuRef
CHM1_11210,034,842 - 10,053,995 (-)NCBICHM1_1
T2T-CHM13v2.0129,767,385 - 9,818,588 (-)NCBIT2T-CHM13v2.0
Clec2i
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396128,864,550 - 128,875,131 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6128,864,551 - 128,875,130 (+)EnsemblGRCm39 Ensembl
GRCm386128,887,587 - 128,898,168 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6128,887,588 - 128,898,167 (+)EnsemblGRCm38mm10GRCm38
MGSCv376128,837,632 - 128,846,870 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366128,853,233 - 128,862,471 (+)NCBIMGSCv36mm8
Celera6130,597,441 - 130,606,678 (+)NCBICelera
Cytogenetic Map6F3NCBI
cM Map663.1NCBI
CLEC2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21015,400,814 - 15,426,096 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11215,399,252 - 15,422,248 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0129,959,826 - 9,981,376 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11210,195,632 - 10,229,273 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1210,195,862 - 10,229,273 (-)Ensemblpanpan1.1panPan2
CLEC2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1119,790,411 - 9,813,839 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl119,790,671 - 9,813,543 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660891,864,876 - 1,887,797 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005341815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_005341815   ⟹   XP_005341872
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494597,452,283 - 97,455,414 (+)NCBI
SpeTri2.0NW_004936902583,850 - 586,981 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005341872 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3292414 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005341872   ⟸   XM_005341815
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Clec2a ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101956536  C-type lectin domain family 2 member A  Clec2a  C-type lectin domain family 2 member A  Symbol and/or name change 5135510 APPROVED