Dus3l (dihydrouridine synthase 3 like) - Rat Genome Database

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Gene: Dus3l (dihydrouridine synthase 3 like) Ictidomys tridecemlineatus
Analyze
Symbol: Dus3l
Name: dihydrouridine synthase 3 like
RGD ID: 12457528
Description: ENCODES a protein that exhibits flavin adenine dinucleotide binding (inferred); metal ion binding (inferred); mRNA dihydrouridine synthase activity (inferred); INVOLVED IN mRNA processing (inferred); regulation of translation (inferred); tRNA dihydrouridine synthesis (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,497,957 - 214,502,948 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,331,904 - 3,337,277 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,331,563 - 3,337,276 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dus3l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,497,957 - 214,502,948 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,331,904 - 3,337,277 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,331,563 - 3,337,276 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DUS3L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38195,785,140 - 5,791,163 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl195,784,832 - 5,791,225 (-)EnsemblGRCh38hg38GRCh38
GRCh37195,785,151 - 5,791,174 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36195,736,151 - 5,742,192 (-)NCBINCBI36Build 36hg18NCBI36
Celera195,723,144 - 5,730,021 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef195,546,085 - 5,552,589 (-)NCBIHuRef
CHM1_1195,785,079 - 5,791,308 (-)NCBICHM1_1
T2T-CHM13v2.0195,771,937 - 5,778,591 (-)NCBIT2T-CHM13v2.0
Dus3l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391757,069,224 - 57,077,093 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1757,071,757 - 57,077,093 (+)EnsemblGRCm39 Ensembl
GRCm381756,764,751 - 56,770,093 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,764,757 - 56,770,093 (+)EnsemblGRCm38mm10GRCm38
MGSCv371756,904,174 - 56,909,516 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,449,902 - 56,454,965 (+)NCBIMGSCv36mm8
Celera1761,108,892 - 61,114,234 (+)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.5NCBI
Dus3l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr891,680,619 - 1,685,784 (+)NCBIGRCr8
mRatBN7.291,593,491 - 1,598,663 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,594,123 - 1,598,655 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx92,028,265 - 2,032,806 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,377,380 - 7,381,917 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,333,460 - 6,338,001 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,289,440 - 10,294,213 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,289,446 - 10,293,980 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,286,520 - 9,291,291 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,918,090 - 6,922,626 (-)NCBICelera
Cytogenetic Map9q11NCBI
Dus3l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554953,653,257 - 3,660,331 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554953,653,613 - 3,660,331 (+)NCBIChiLan1.0ChiLan1.0
DUS3L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22010,179,205 - 10,186,888 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1199,403,225 - 9,413,083 (-)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl195,731,457 - 5,737,775 (-)Ensemblpanpan1.1panPan2
DUS3L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12054,250,369 - 54,255,981 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2054,250,871 - 54,255,995 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,977,808 - 53,983,421 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,902,723 - 54,908,336 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2054,903,204 - 54,908,350 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12053,969,030 - 53,974,635 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02054,449,603 - 54,455,181 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,646,813 - 54,652,426 (+)NCBIUU_Cfam_GSD_1.0
DUS3L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl273,197,669 - 73,204,977 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1273,197,614 - 73,202,676 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,719,549 - 73,724,598 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DUS3L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.165,430,558 - 5,437,638 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl65,430,580 - 5,437,452 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660812,627,456 - 2,630,452 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dus3l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248284,431,167 - 4,437,365 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248284,431,172 - 4,437,459 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000022060   ⟹   ENSSTOP00000018415
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365883,331,904 - 3,336,690 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000035596   ⟹   ENSSTOP00000032659
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365883,331,904 - 3,337,277 (-)Ensembl
RefSeq Acc Id: XM_005332069   ⟹   XP_005332126
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118214,497,985 - 214,502,948 (+)NCBI
SpeTri2.0NW_0049365883,331,563 - 3,337,276 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040290630   ⟹   XP_040146564
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118214,497,957 - 214,502,948 (+)NCBI
RefSeq Acc Id: XM_040290631   ⟹   XP_040146565
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118214,498,604 - 214,502,948 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005332126 (Get FASTA)   NCBI Sequence Viewer  
  XP_040146564 (Get FASTA)   NCBI Sequence Viewer  
  XP_040146565 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018415.2
  ENSSTOP00000032659.1
GenBank Protein KAG3280638 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005332126   ⟸   XM_005332069
- Peptide Label: isoform X3
- UniProtKB: A0A287DGI7 (UniProtKB/TrEMBL),   I3N219 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040146564   ⟸   XM_040290630
- Peptide Label: isoform X1
- UniProtKB: I3N219 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040146565   ⟸   XM_040290631
- Peptide Label: isoform X2
- UniProtKB: I3N219 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000018415   ⟸   ENSSTOT00000022060
Ensembl Acc Id: ENSSTOP00000032659   ⟸   ENSSTOT00000035596
Protein Domains
C3H1-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025017 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022060.2 UniProtKB/TrEMBL
  ENSSTOT00000035596.1 UniProtKB/TrEMBL
Gene3D-CATH 3.20.20.70 UniProtKB/TrEMBL
  Zinc finger, CCCH-type UniProtKB/TrEMBL
InterPro Aldolase_TIM UniProtKB/TrEMBL
  DUS-like_FMN-bd UniProtKB/TrEMBL
  tRNA_hU_synthase_CS UniProtKB/TrEMBL
  Znf-CCCH_4 UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/TrEMBL
NCBI Gene Dus3l ENTREZGENE
PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE UniProtKB/TrEMBL
  TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE UniProtKB/TrEMBL
Pfam Dus UniProtKB/TrEMBL
  zf-CCCH_4 UniProtKB/TrEMBL
PROSITE UPF0034 UniProtKB/TrEMBL
  ZF_C3H1 UniProtKB/TrEMBL
Superfamily-SCOP FMN-linked oxidoreductases UniProtKB/TrEMBL
UniProt A0A287DGI7 ENTREZGENE, UniProtKB/TrEMBL
  I3N219 ENTREZGENE, UniProtKB/TrEMBL