Cdh24 (cadherin 24) - Rat Genome Database

Name: Cdh24
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Cdh24 (cadherin 24) Ictidomys tridecemlineatus

Analyze

Symbol:

Cdh24

Name:

cadherin 24

RGD ID:

12454676

Description:

ENCODES a protein that exhibits alpha-catenin binding (ortholog); beta-catenin binding (ortholog); delta-catenin binding (ortholog); INVOLVED IN cell-cell adhesion (ortholog); ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); genetic disease (ortholog); lysinuric protein intolerance (ortholog); FOUND IN adherens junction (inferred); catenin complex (inferred); cell-cell junction (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cadherin 24, transcript variant X1; cadherin 24, transcript variant X2; cadherin 24, transcript variant X3; cadherin-24

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDH24 (cadherin 24)	NCBI	Ortholog
Mus musculus (house mouse):	Cdh24 (cadherin-like 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cdh24 (cadherin 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cdh24 (cadherin 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CDH24 (cadherin 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CDH24 (cadherin 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CDH24 (cadherin 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDH24 (cadherin 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdh24 (cadherin 24)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	35,113,156 - 35,123,474 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936722	1,265,219 - 1,275,920 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936722	1,265,583 - 1,276,443 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Brain-Lung-Thyroid Syndrome (ISO)

genetic disease (ISO)

lysinuric protein intolerance (ISO)

Specific Granule Deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adherens junction organization (IEA)

calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules (IEA)

cell adhesion (IEA)

cell morphogenesis (IEA)

cell-cell adhesion (IEA,ISO)

cell-cell adhesion mediated by cadherin (IEA)

cell-cell junction assembly (IEA)

homophilic cell adhesion via plasma membrane adhesion molecules (IEA)

Cellular Component

adherens junction (IEA)

catenin complex (IEA)

cell-cell junction (IEA)

plasma membrane (IEA)

Molecular Function

alpha-catenin binding (ISO)

beta-catenin binding (ISO)

cadherin binding (IEA)

calcium ion binding (IEA)

delta-catenin binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Cdh24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	35,113,156 - 35,123,474 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936722	1,265,219 - 1,275,920 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936722	1,265,583 - 1,276,443 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDH24
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	23,047,067 - 23,057,520 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	23,047,062 - 23,057,538 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	23,516,276 - 23,526,729 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	22,586,709 - 22,594,875 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	22,586,708 - 22,594,875	NCBI
Celera	14	3,378,962 - 3,389,437 (-)	NCBI		Celera
Cytogenetic Map	14	q11.2	NCBI
HuRef	14	3,633,349 - 3,643,699 (-)	NCBI		HuRef
CHM1_1	14	23,514,900 - 23,525,377 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	17,247,688 - 17,258,139 (-)	NCBI		T2T-CHM13v2.0

Cdh24
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	54,868,688 - 54,878,853 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	54,868,688 - 54,878,821 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	54,631,231 - 54,642,067 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	54,631,231 - 54,641,364 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	55,250,829 - 55,260,201 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	53,585,436 - 53,595,523 (-)	NCBI		MGSCv36	mm8
Celera	14	52,420,388 - 52,429,748 (-)	NCBI		Celera
Cytogenetic Map	14	C2	NCBI
cM Map	14	27.87	NCBI

Cdh24
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	32,061,588 - 32,071,323 (-)	NCBI		GRCr8
mRatBN7.2	15	28,091,578 - 28,101,330 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	28,091,637 - 28,101,340 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	15	33,277,845 - 33,287,546 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	33,278,713 - 33,285,779 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	37,162,640 - 37,172,757 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	32,710,204 - 32,717,270 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	15	27,669,781 - 27,679,490 (-)	NCBI		Celera
Cytogenetic Map	15	p13	NCBI

Cdh24
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	37,249,531 - 37,256,603 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955409	37,249,377 - 37,257,420 (+)	NCBI	ChiLan1.0	ChiLan1.0

CDH24
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	24,479,600 - 24,490,032 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	23,696,087 - 23,706,518 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	3,866,958 - 3,877,393 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	21,963,975 - 21,974,369 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	21,964,897 - 21,972,528 (-)	Ensembl	panpan1.1		panPan2

CDH24
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	3,359,452 - 3,369,590 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	3,359,875 - 3,367,942 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	3,308,149 - 3,318,203 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	3,467,319 - 3,477,376 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	3,467,250 - 3,475,742 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	3,158,726 - 3,168,781 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	3,219,964 - 3,230,010 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	3,482,028 - 3,492,086 (-)	NCBI		UU_Cfam_GSD_1.0

CDH24
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	75,990,220 - 76,001,130 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	75,990,185 - 76,001,133 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	81,327,040 - 81,351,723 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDH24
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	29	23,416,449 - 23,427,764 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	29	23,417,354 - 23,426,738 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	22,990,284 - 23,000,750 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdh24
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624820	9,485,919 - 9,494,990 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624820	9,484,779 - 9,494,891 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021735587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021735589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040275313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040275314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040275315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040275316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000007159 ⟹ ENSSTOP00000006398

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936722	1,265,219 - 1,275,920 (+)	Ensembl

RefSeq Acc Id:

XM_021735588 ⟹ XP_021591263

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	35,113,156 - 35,123,471 (-)	NCBI
SpeTri2.0	NW_004936722	1,265,583 - 1,276,443 (+)	NCBI

Sequence:

show sequence

CGCTCCCTTGTTCTCGCCGGGGCCGCTCAGACCTGCAGCGGAGCCGCGGCGCCCGCTACGATCT
GCTTGGGGCTGCGCCCCCGGGAGCCGGCGACGGGAACGGGCGGGGGCGCTCCCCGCTGTCCTGG
GCCCCTCGGTAGTGTCAGCTTTTCTACTCAGAGTTGACTGGTCAGAGATTTATCAGTTTGCAAG
GCTGAGGTGTGGATCCATGGGGTAGCCCCACTGCATCTGCCCCTCCACCCCAGCCAGCTCATGG
GCCACCTGGCCCAGCCCAGCCTCAGCACCCCCGGCCAGTGAACAGAGCCCTGGCTGGAATCCAA
AAATGTGGGGCCTGGTGAGGCTCCTACTGGCCTGGCTGGGTGGCTGGGGCTGCATGGGGCGTCT
GGCAGCCCCAGTTCGGGCCTGGGCAGGGTCCCGGGGGCGCCCAGGGCCTGCACTACTGCGGACC
CGAAGGAGCTGGGTCTGGAACCAGTTCTTTGTCATTGAGGAATATGCCGGTCCAGAGCCCGTCC
TTATTGGCAAGCTGCACTCAGATGTTGACAGGGGTGAGGGCCGCACCAAGTACCTGCTGACTGG
AGAGGGAGCAGGCACTGTATTTGTGATTGACGAGGCCACAGGCAATATCCATGTCACCAAAAGC
CTGGATCGGGAAGAGAAGGCACAATACGTGCTACTGGCTCAAGCTGTGGACCGAGCCTCCAATC
GGCCCTTGGAGCCCCCATCAGAGTTCATCATCAAAGTGCAAGACATCAATGACAATCCACCTGT
GTTTCCTCTCGGGCCCTACCATGCTACAGTACCTGAGATGTCCAATGTTGGGACATCAGTGATC
CAGGTGACTGCTCATGATGCTGATGACCCCAGCTATGGGAACAGTGCCAAGCTGGTATACACAG
TGCTAGATGGACTGCCTTTCTTCTCTGTGGACCCCCAGACTGGAGTGGTGCGTACAGCGATCCC
CAACATGGACCGGGAGACCCAGGAGGAGTTCTTAGTAGTGATCCAGGCCAAGGACATGGGCGGC
CACATGGGGGGGCTATCAGGCAGCACTACAGTGACGGTCACTCTCAGCGATGTCAACGACAACC
CCCCCAAGTTCCCTCAGAGCCTGTACCAGTTTTCCGTGGTGGAGACAGCTGGGCCTGGCACCTT
GGTGGGCCGGCTGCAGGCCCAGGACCCAGATCTGGGGGATAATGCTCTCATGGCATACAGCATC
CTGGATGGGGAAGGGTCAGAGGCCTTTAGCATCAGCACAGATGCCCAGGGTCGAGATGGGCTCC
TCACTGTCCGCAAGCCCCTAGACTTTGAGACCCGCCGCTCTTACTCATTCCGTGTAGAGGCCAC
CAACACACTCATTGACCCAGCCTACCTGCGGCGAGGGCCCTTCAAGGATGTGGCTTCAGTGAGA
GTGACTGTGCAAGATGCTCCAGAGCCACCTGCCTTCACCCAGGCTGCCTACCACCTGACAGTGA
TGGAGAACAAGTCTCCAGGGATCCTGGTGGGCCAGGTCTCAGCAGCTGACCTAGACTCCCCAGC
CAGTCCAATCAGATACTCCATCCTCCCCCACTCGGATCCAGAGCATTGCTTCTCCATCGAGCCC
GAAGATGGTACCATCCGAACAGCAGTACCCCTGGACCGTGAGACTCGTGTCTGGCACAACCTCA
CTGTGCTGGCCACTGAGCTTGATAGCTCCGCACAGGCCTCCCGTGTACAAGTGGCCATCCAGAC
CCTGGATGAGAATGACAATGCTCCCCAGCTGGCTGAGCCCTATGACACCTTTGTTTGTGATTCT
GCAGCCCCTGGCCAGTTGATTCAGGTTATCCGGGCCCTGGACAGAGATGAAGTCGGCAACAGTA
GCCGAGTCTCCCTTCAAGGTCCTCTGGGCCCTGATGCCAACTTTACTGTCCAGGACAACCGAGA
TGGCTCCGCCAGCCTGCTGCTGCCCTCCCGCCCTGCTCCACCCCGCCAGGCCCCCTACCTGGTT
CCCATAGAACTGAGGGATTGGGGGCAGCCAGCACTGAGCAGCACTGCCACGGTGACTGTCAGTG
TGTGCCGCTGCCGGCCTGATGGCTCCGTGGCATCCTGCCGGCCTGAGGCTCAGCTCTCACCTAC
TGGGCTCAGCACTGGCGCCCTGCTTGCCATCGTCACCTGTGTGGGCACCCTGCTTGCCCTAGTG
GTGCTCTTCGTGGCCCTGCGGCGGCAGAAGCAAGAAGCACTAATGGTACTTGAGGAGGAGGATG
TCCGCGAGAACATCATCACCTATGATGACGAGGGGGGCGGCGAGGAAGACACGGAAGCCTTTGA
CATCACGGCTCTGCAGAACCCTGATGGGGCTGCCCCACCAGTTCCTGGGCCACCAGTGCGTCGC
GACGTGCTGCCCCGGGCCCGGGCTGCGCGCCAGCCCCGACCACCGGGTCCTGCTGACGTGGCCC
AACTGCTTGCATTGCGGCTGCGTGAGGCGGACGAGGACCCCAGTGTGCCCCCCTACGACTCGGT
GCAGGTGTATGGCTATGAGGGCCGGGGCTCCTCCTGCGGCTCCCTCAGCTCCCTGGGCTCTGGC
AGCGAGGCCGGTGGCACCCCTGGCCCCACGGAGCCCGTGGACGACTGGGGTCCGCTCTTCCGCA
CCCTGGCGGAGCTATATGGGGCCAAAGAGCCCCCAGCCCCCTGAGCGCCGGCCCTGGCCCTGCC
CGCCGCGGTGGGGCAGCCAGTACAGGTCCTCTGAGTGAGCCCCACAGGGTCCAGGCAGGCCGCA
GCAGCCAGAGGCCTCAGGCTTCCTCCCGTCCCTGTGTCCCTCCTTCCTTCCCTGGGGCTCCCTT
GCCCTTACCTCCCACTTGGAGGATCTCTCTCCAGGGATCTCTGTCAGTGCCACTTTCCCTTTGT
CCTGGTCTGGGTTTTATGGCTCTGACCCTGAACCTCTGTTCTCTCACTGTGATTCCGCTTTCTC
TGTGACTGTTTTGTCTCTGTGATTCTAAAGCTCTCACATACTGTCTCTCTTGCCCACAAATATG
CTCTGTGTCTGTCTCCCACCCACACTTCCCCCCTCTCTGAGTCCCTGTGACTGGCTTTTTTTGG
TTTTGGTTTTGGTTTTCTGTCGTCCATCCCAAAAGCAAGAGAAACTTCCAGCCACTGCTGCCCA
CCCTCCTGCAGGGGATGCTCTGCCCCAGGTCAGTGTCTCTAGACAGCTTGGCCAGGGGTGGATA
GAAGCCCTTCCCTAATTTCTGCCTCTCACTGCTGCTCCTGTCCTAACAGACCTGCCCGCATGGT
TCCATCCATCACTCATGGCCTCATCCTGGCTCCACTGGCCTCCAGCAGAAGGAGGGAGCCAGCC
TGCCTCCCAGGGGGAGAGCTCCAGCCCCCTCGTGGCCGCCTCCCTGGAGCTCTGCCCAGCTGTC
AGCCTGCCCTGGGCATCCCAGCTCTGGGCATTGTCTTGTGTGCTTTCCAGGCCCCAGGGAGAGG
GGGAGTAAAGGAGGAGGCAGCTGGGGAAGGGGAAAGAAGGAGGAAGGGGAGGGGCCTCCATCTC
TAATTTCATAATAAACAAACACTTTATTTTGTAAA

hide sequence

RefSeq Acc Id:

XM_021735589 ⟹ XP_021591264

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	35,113,156 - 35,123,474 (-)	NCBI
SpeTri2.0	NW_004936722	1,265,583 - 1,276,443 (+)	NCBI

Sequence:

show sequence

CGCTCCCTTGTTCTCGCCGGGGCCGCTCAGACCTGCAGCGGAGCCGCGGCGCCCGCTACGATCT
GCTTGGGGCTGCGCCCCCGGGAGCCGGCGACGGGAACGGGCGGGGGCGCTCCCCGCTGTCCTGG
GCCCCTCGGTAGTGTCAGCTTTTCTACTCAGAGTTGACTGGTCAGAGATTTATCAGTTTGCAAG
GCTGAGGTGTGGATCCATGGGGTAGCCCCACTGCATCTGCCCCTCCACCCCAGCCAGCTCATGG
GCCACCTGGCCCAGCCCAGCCTCAGCACCCCCGGCCAGTGAACAGAGCCCTGGCTGGAATCCAA
AAATGTGGGGCCTGGTGAGGCTCCTACTGGCCTGGCTGGGTGGCTGGGGCTGCATGGGGCGTCT
GGCAGCCCCAGTTCGGGCCTGGGCAGGGTCCCGGGGGCGCCCAGGGCCTGCACTACTGCGGACC
CGAAGGAGCTGGGTCTGGAACCAGTTCTTTGTCATTGAGGAATATGCCGGTCCAGAGCCCGTCC
TTATTGGCAAGCTGCACTCAGATGTTGACAGGGGTGAGGGCCGCACCAAGTACCTGCTGACTGG
AGAGGGAGCAGGCACTGTATTTGTGATTGACGAGGCCACAGGCAATATCCATGTCACCAAAAGC
CTGGATCGGGAAGAGAAGGCACAATACGTGCTACTGGCTCAAGCTGTGGACCGAGCCTCCAATC
GGCCCTTGGAGCCCCCATCAGAGTTCATCATCAAAGTGCAAGACATCAATGACAATCCACCTGT
GTTTCCTCTCGGGCCCTACCATGCTACAGTACCTGAGATGTCCAATGTTGGGACATCAGTGATC
CAGGTGACTGCTCATGATGCTGATGACCCCAGCTATGGGAACAGTGCCAAGCTGGTATACACAG
TGCTAGATGGACTGCCTTTCTTCTCTGTGGACCCCCAGACTGGAGTGGTGCGTACAGCGATCCC
CAACATGGACCGGGAGACCCAGGAGGAGTTCTTAGTAGTGATCCAGGCCAAGGACATGGGCGGC
CACATGGGGGGGCTATCAGGCAGCACTACAGTGACGGTCACTCTCAGCGATGTCAACGACAACC
CCCCCAAGTTCCCTCAGAGCCTGTACCAGTTTTCCGTGGTGGAGACAGCTGGGCCTGGCACCTT
GGTGGGCCGGCTGCAGGCCCAGGACCCAGATCTGGGGGATAATGCTCTCATGGCATACAGCATC
CTGGATGGGGAAGGGTCAGAGGCCTTTAGCATCAGCACAGATGCCCAGGGTCGAGATGGGCTCC
TCACTGTCCGCAAGCCCCTAGACTTTGAGACCCGCCGCTCTTACTCATTCCGTGTAGAGGCCAC
CAACACACTCATTGACCCAGCCTACCTGCGGCGAGGGCCCTTCAAGGATGTGGCTTCAGTGAGA
GTGACTGTGCAAGATGCTCCAGAGCCACCTGCCTTCACCCAGGCTGCCTACCACCTGACAGTGA
TGGAGAACAAGTCTCCAGGGATCCTGGTGGGCCAGGTCTCAGCAGCTGACCTAGACTCCCCAGC
CAGTCCAATCAGATACTCCATCCTCCCCCACTCGGATCCAGAGCATTGCTTCTCCATCGAGCCC
GAAGATGGTACCATCCGAACAGCAGTACCCCTGGACCGTGAGACTCGTGTCTGGCACAACCTCA
CTGTGCTGGCCACTGAGCTTGTACATTCGGCTTCAGGCTGGAGCTGGGGGCCAGAAAAGGGCTG
GGCACCTCCTTCGGCAGCTAAGGAGGAGTGTACTAGCAGCGCCTCCCAGAGAAGGCCTGGTGGA
AGCCCTCAAGATAGCTCCGCACAGGCCTCCCGTGTACAAGTGGCCATCCAGACCCTGGATGAGA
ATGACAATGCTCCCCAGCTGGCTGAGCCCTATGACACCTTTGTTTGTGATTCTGCAGCCCCTGG
CCAGTTGATTCAGGTTATCCGGGCCCTGGACAGAGATGAAGTCGGCAACAGTAGCCGAGTCTCC
CTTCAAGGTCCTCTGGGCCCTGATGCCAACTTTACTGTCCAGGACAACCGAGATGGCTCCGCCA
GCCTGCTGCTGCCCTCCCGCCCTGCTCCACCCCGCCAGGCCCCCTACCTGGTTCCCATAGAACT
GAGGGATTGGGGGCAGCCAGCACTGAGCAGCACTGCCACGGTGACTGTCAGTGTGTGCCGCTGC
CGGCCTGATGGCTCCGTGGCATCCTGCCGGCCTGAGGCTCAGCTCTCACCTACTGGGCTCAGCA
CTGGCGCCCTGCTTGCCATCGTCACCTGTGTGGGCACCCTGCTTGCCCTAGTGGTGCTCTTCGT
GGCCCTGCGGCGGCAGAAGCAAGAAGCACTAATGGTACTTGAGGAGGAGGATGTCCGCGAGAAC
ATCATCACCTATGATGACGAGGGGGGCGGCGAGGAAGACACGGAAGCCTTTGACATCACGGCTC
TGCAGAACCCTGATGGGGCTGCCCCACCAGTTCCTGGGCCACCAGTGCGTCGCGACGTGCTGCC
CCGGGCCCGGGCTGCGCGCCAGCCCCGACCACCGGGTCCTGCTGACGTGGCCCAACTGCTTGCA
TTGCGGCTGCGTGAGGCGGACGAGGACCCCAGTGTGCCCCCCTACGACTCGGTGCAGGTGTATG
GCTATGAGGGCCGGGGCTCCTCCTGCGGCTCCCTCAGCTCCCTGGGCTCTGGCAGCGAGGCCGG
TGGCACCCCTGGCCCCACGGAGCCCGTGGACGACTGGGGTCCGCTCTTCCGCACCCTGGCGGAG
CTATATGGGGCCAAAGAGCCCCCAGCCCCCTGAGCGCCGGCCCTGGCCCTGCCCGCCGCGGTGG
GGCAGCCAGTACAGGTCCTCTGAGTGAGCCCCACAGGGTCCAGGCAGGCCGCAGCAGCCAGAGG
CCTCAGGCTTCCTCCCGTCCCTGTGTCCCTCCTTCCTTCCCTGGGGCTCCCTTGCCCTTACCTC
CCACTTGGAGGATCTCTCTCCAGGGATCTCTGTCAGTGCCACTTTCCCTTTGTCCTGGTCTGGG
TTTTATGGCTCTGACCCTGAACCTCTGTTCTCTCACTGTGATTCCGCTTTCTCTGTGACTGTTT
TGTCTCTGTGATTCTAAAGCTCTCACATACTGTCTCTCTTGCCCACAAATATGCTCTGTGTCTG
TCTCCCACCCACACTTCCCCCCTCTCTGAGTCCCTGTGACTGGCTTTTTTTGGTTTTGGTTTTG
GTTTTCTGTCGTCCATCCCAAAAGCAAGAGAAACTTCCAGCCACTGCTGCCCACCCTCCTGCAG
GGGATGCTCTGCCCCAGACCTGCCCGCATGGTTCCATCCATCACTCATGGCCTCATCCTGGCTC
CACTGGCCTCCAGCAGAAGGAGGGAGCCAGCCTGCCTCCCAGGGGGAGAGCTCCAGCCCCCTCG
TGGCCGCCTCCCTGGAGCTCTGCCCAGCTGTCAGCCTGCCCTGGGCATCCCAGCTCTGGGCATT
GTCTTGTGTGCTTTCCAGGCCCCAGGGAGAGGGGGAGTAAAGGAGGAGGCAGCTGGGGAAGGGG
AAAGAAGGAGGAAGGGGAGGGGCCTCCATCTCTAATTTCATAATAAACAAACACTTTATTTTGT
AAA

hide sequence

RefSeq Acc Id:

XM_040275313 ⟹ XP_040131247

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	35,113,156 - 35,123,255 (-)	NCBI

RefSeq Acc Id:

XM_040275314 ⟹ XP_040131248

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	35,113,156 - 35,123,255 (-)	NCBI

RefSeq Acc Id:

XM_040275315 ⟹ XP_040131249

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	35,113,156 - 35,123,474 (-)	NCBI

RefSeq Acc Id:

XM_040275316 ⟹ XP_040131250

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	35,113,156 - 35,123,471 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_021591263	(Get FASTA)	NCBI Sequence Viewer
	XP_021591264	(Get FASTA)	NCBI Sequence Viewer
	XP_040131247	(Get FASTA)	NCBI Sequence Viewer
	XP_040131248	(Get FASTA)	NCBI Sequence Viewer
	XP_040131249	(Get FASTA)	NCBI Sequence Viewer
	XP_040131250	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000006398.2
GenBank Protein	KAG3260895	(Get FASTA)	NCBI Sequence Viewer
	KAG3260896	(Get FASTA)	NCBI Sequence Viewer
	KAG3260897	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_021591264 ⟸ XM_021735589

- Peptide Label:

isoform X1

- Sequence:

show sequence

MWGLVRLLLAWLGGWGCMGRLAAPVRAWAGSRGRPGPALLRTRRSWVWNQFFVIEEYAGPEPVL
IGKLHSDVDRGEGRTKYLLTGEGAGTVFVIDEATGNIHVTKSLDREEKAQYVLLAQAVDRASNR
PLEPPSEFIIKVQDINDNPPVFPLGPYHATVPEMSNVGTSVIQVTAHDADDPSYGNSAKLVYTV
LDGLPFFSVDPQTGVVRTAIPNMDRETQEEFLVVIQAKDMGGHMGGLSGSTTVTVTLSDVNDNP
PKFPQSLYQFSVVETAGPGTLVGRLQAQDPDLGDNALMAYSILDGEGSEAFSISTDAQGRDGLL
TVRKPLDFETRRSYSFRVEATNTLIDPAYLRRGPFKDVASVRVTVQDAPEPPAFTQAAYHLTVM
ENKSPGILVGQVSAADLDSPASPIRYSILPHSDPEHCFSIEPEDGTIRTAVPLDRETRVWHNLT
VLATELVHSASGWSWGPEKGWAPPSAAKEECTSSASQRRPGGSPQDSSAQASRVQVAIQTLDEN
DNAPQLAEPYDTFVCDSAAPGQLIQVIRALDRDEVGNSSRVSLQGPLGPDANFTVQDNRDGSAS
LLLPSRPAPPRQAPYLVPIELRDWGQPALSSTATVTVSVCRCRPDGSVASCRPEAQLSPTGLST
GALLAIVTCVGTLLALVVLFVALRRQKQEALMVLEEEDVRENIITYDDEGGGEEDTEAFDITAL
QNPDGAAPPVPGPPVRRDVLPRARAARQPRPPGPADVAQLLALRLREADEDPSVPPYDSVQVYG
YEGRGSSCGSLSSLGSGSEAGGTPGPTEPVDDWGPLFRTLAELYGAKEPPAP

hide sequence

RefSeq Acc Id:	XP_021591263 ⟸ XM_021735588
- Peptide Label:	isoform X2
- UniProtKB:	I3M975 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWGLVRLLLAWLGGWGCMGRLAAPVRAWAGSRGRPGPALLRTRRSWVWNQFFVIEEYAGPEPVL IGKLHSDVDRGEGRTKYLLTGEGAGTVFVIDEATGNIHVTKSLDREEKAQYVLLAQAVDRASNR PLEPPSEFIIKVQDINDNPPVFPLGPYHATVPEMSNVGTSVIQVTAHDADDPSYGNSAKLVYTV LDGLPFFSVDPQTGVVRTAIPNMDRETQEEFLVVIQAKDMGGHMGGLSGSTTVTVTLSDVNDNP PKFPQSLYQFSVVETAGPGTLVGRLQAQDPDLGDNALMAYSILDGEGSEAFSISTDAQGRDGLL TVRKPLDFETRRSYSFRVEATNTLIDPAYLRRGPFKDVASVRVTVQDAPEPPAFTQAAYHLTVM ENKSPGILVGQVSAADLDSPASPIRYSILPHSDPEHCFSIEPEDGTIRTAVPLDRETRVWHNLT VLATELDSSAQASRVQVAIQTLDENDNAPQLAEPYDTFVCDSAAPGQLIQVIRALDRDEVGNSS RVSLQGPLGPDANFTVQDNRDGSASLLLPSRPAPPRQAPYLVPIELRDWGQPALSSTATVTVSV CRCRPDGSVASCRPEAQLSPTGLSTGALLAIVTCVGTLLALVVLFVALRRQKQEALMVLEEEDV RENIITYDDEGGGEEDTEAFDITALQNPDGAAPPVPGPPVRRDVLPRARAARQPRPPGPADVAQ LLALRLREADEDPSVPPYDSVQVYGYEGRGSSCGSLSSLGSGSEAGGTPGPTEPVDDWGPLFRT LAELYGAKEPPAP hide sequence

RefSeq Acc Id:	XP_040131249 ⟸ XM_040275315
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040131250 ⟸ XM_040275316
- Peptide Label:	isoform X2
- UniProtKB:	I3M975 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040131248 ⟸ XM_040275314
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040131247 ⟸ XM_040275313
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSSTOP00000006398 ⟸ ENSSTOT00000007159

Protein Domains

Cadherin

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000007148	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000007159.3	UniProtKB/TrEMBL
Gene3D-CATH	4.10.900.10	UniProtKB/TrEMBL
	Cadherins	UniProtKB/TrEMBL
InterPro	Cadherin	UniProtKB/TrEMBL
	Cadherin-like_dom	UniProtKB/TrEMBL
	Cadherin-like_sf	UniProtKB/TrEMBL
	Cadherin_CS	UniProtKB/TrEMBL
	Cadherin_cytoplasmic-dom	UniProtKB/TrEMBL
	Catenin-bd_sf	UniProtKB/TrEMBL
NCBI Gene	Cdh24	ENTREZGENE
PANTHER	CADHERIN-24	UniProtKB/TrEMBL
	PTHR24027	UniProtKB/TrEMBL
Pfam	Cadherin	UniProtKB/TrEMBL
	Cadherin_C	UniProtKB/TrEMBL
PRINTS	CADHERIN	UniProtKB/TrEMBL
PROSITE	CADHERIN_1	UniProtKB/TrEMBL
	CADHERIN_2	UniProtKB/TrEMBL
SMART	SM00112	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49313	UniProtKB/TrEMBL
UniProt	I3M975	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar