Cops7b (COP9 signalosome subunit 7B)

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Gene: Cops7b (COP9 signalosome subunit 7B) Ictidomys tridecemlineatus

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Symbol:

Cops7b

Name:

COP9 signalosome subunit 7B

RGD ID:

12445580

Description:

INVOLVED IN COP9 signalosome assembly (inferred); protein deneddylation (inferred); ASSOCIATED WITH Joubert syndrome 22 (ortholog); osteochondrodysplasia (ortholog); Perlman syndrome (ortholog); FOUND IN COP9 signalosome (inferred); cytoplasm (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

COP9 signalosome complex subunit 7b; COP9 signalosome subunit 7B, transcript variant X1; COP9 signalosome subunit 7B, transcript variant X2; COP9 signalosome subunit 7B, transcript variant X3; COP9 signalosome subunit 7B, transcript variant X4; COP9 signalosome subunit 7B, transcript variant X5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	185,753,572 - 185,780,853 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936525	5,156,785 - 5,182,012 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936525	5,159,157 - 5,186,142 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Joubert syndrome 22 (ISO)

osteochondrodysplasia (ISO)

Perlman syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

COP9 signalosome assembly (IEA)

protein deneddylation (IEA)

Cellular Component

COP9 signalosome (IEA)

cytoplasm (IEA)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Cops7b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	185,753,572 - 185,780,853 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936525	5,156,785 - 5,182,012 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936525	5,159,157 - 5,186,142 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COPS7B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	231,781,671 - 231,809,253 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	231,781,671 - 231,809,254 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	232,646,381 - 232,673,963 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	232,359,406 - 232,381,678 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	232,476,666 - 232,498,939	NCBI
Celera	2	226,427,678 - 226,449,946 (+)	NCBI		Celera
Cytogenetic Map	2	q37.1	NCBI
HuRef	2	224,495,756 - 224,515,928 (+)	NCBI		HuRef
CHM1_1	2	232,656,979 - 232,679,248 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	232,266,242 - 232,293,824 (+)	NCBI		T2T-CHM13v2.0

Cops7b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	86,510,363 - 86,534,550 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	86,510,626 - 86,537,097 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	86,582,646 - 86,606,828 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	86,582,904 - 86,609,375 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	88,483,675 - 88,503,075 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	88,418,271 - 88,437,671 (+)	NCBI		MGSCv36	mm8
Celera	1	89,556,717 - 89,576,116 (+)	NCBI		Celera
Cytogenetic Map	1	C5	NCBI
cM Map	1	43.97	NCBI

Cops7b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	94,686,314 - 94,711,903 (+)	NCBI		GRCr8
mRatBN7.2	9	87,238,132 - 87,263,967 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	87,238,375 - 87,263,967 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	95,654,909 - 95,680,466 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	100,783,098 - 100,808,674 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	99,166,666 - 99,192,255 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	93,607,199 - 93,633,064 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	93,607,477 - 93,633,064 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	93,335,116 - 93,361,000 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	85,353,285 - 85,378,872 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	85,541,787 - 85,560,985 (+)	NCBI
Celera	9	84,653,671 - 84,679,234 (+)	NCBI		Celera
Cytogenetic Map	9	q35	NCBI

Cops7b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	3,967,241 - 3,986,314 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	3,967,241 - 3,991,802 (-)	NCBI	ChiLan1.0	ChiLan1.0

COPS7B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	134,406,071 - 134,433,795 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	134,421,141 - 134,448,759 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	119,033,879 - 119,061,293 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	237,821,398 - 237,849,340 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	237,821,398 - 237,849,340 (+)	Ensembl	panpan1.1		panPan2

COPS7B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	43,637,170 - 43,663,218 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	43,637,335 - 43,661,654 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	44,130,643 - 44,156,556 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	43,893,737 - 43,919,891 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	43,893,973 - 43,919,891 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	43,821,166 - 43,847,074 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	43,664,546 - 43,690,798 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	43,819,902 - 43,845,831 (+)	NCBI		UU_Cfam_GSD_1.0

COPS7B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	132,427,173 - 132,450,689 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	132,427,023 - 132,451,199 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	146,193,566 - 146,201,261 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COPS7B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	117,809,981 - 117,837,768 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	117,817,405 - 117,836,665 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	81,601,415 - 81,629,109 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cops7b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624843	4,780,374 - 4,801,692 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624843	4,776,689 - 4,801,692 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005326435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013359191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013359192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021727091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021727092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040268000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040268001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000027405 ⟹ ENSSTOP00000022182

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936525	5,156,785 - 5,182,012 (-)	Ensembl

RefSeq Acc Id:

XM_013359191 ⟹ XP_013214645

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	185,753,572 - 185,780,853 (+)	NCBI
SpeTri2.0	NW_004936525	5,159,157 - 5,181,750 (-)	NCBI

Sequence:

show sequence

TGGGCGGAACTTGAGTGCAGCGGTGGGAGGCTTCCGGGGGAACCGCACGGTCGACGGGTCGGCG
GAGATAGAAAAACGCCGGACGCTGGACTGATCATGGACGCTTGACAACCTGCGGTCAGGCGCCG
GGAGGCCGAGCCAGCAACGAAAAGGACCCAGAGGCGGCAGGGACAGATGAGATTCTGATAAACA
GAGGCAACTCATTTCAGCTTCCTATGTGTTATGGGCAATATCCTTTGTCTCTGAACCAGAATTT
GTAAATGAGATCTCAAAGTCAGAGAATGGCAGGTGAACAGAAACCCTCAAGTAACCTTCTGGAA
CAGTTTATTTTATTAGCCAAAGGTACCAGTGGCTCAGCCCTCACTGCTCTCATAAGCCAGGTGT
TGGAAGCTCCTGGAGTATATGTCTTTGGAGAGCTGCTGGAGTTGGCCAATGTGCAGGAGCTTGC
AGAAGGAGCAAATGCTGCTTATTTGCAGTTGCTGAACCTGTTTGCCTATGGAACATACCCAGAT
TATATAGCCAACAAGGAGAGCCTGCCAGAACTGAGTGCAGCTCAGCAGAACAAGCTGAAACATC
TTACCATCGTGAGCTTGGCATCAAGAATGAAGTGTATTCCCTACTCTGTGCTGCTGAAGGATCT
GGAAATGAGGAATCTCCGAGAATTAGAAGACCTCATCATAGAGGCTGTCTACACTGACATCATC
CAGGGCAAGCTGGACCAGCGAAATCAGCTGCTAGAGGTGGATTTCTGCATTGGCCGTGACATCC
GCAAGAAGGATATCAATAATATTGTCAAGACCTTGCATGAATGGTGTGATGGCTGTGAAGCAGT
TCTGCTGGGCATTGAACAACAGGTCCTGAGAGCCAACCAGTACAAAGAGAACCACCACCGGACT
CAGCAGCAGGTGGAAGCAGAGGTTACCAACATCAAGAAGACACTTAAAGCCACTGCGTCCTCTT
CAGCTCAGGAAATGGAGCAGCAACTTGCTGAGCGGGAGTGTCCCCCTCATGCTGAGCAGAGGCA
GCCTACCAAGAAGATGTCCAAAGTGAAAGGTCTGGTCTCCAGCCGCCACTAGGACCGGCTGGGG
CAGCTGGCACTCACCAGGCCTGGGTCAGGTGGGGAGGGGACACCAAGGGCCTATTTCCTCCCTT
CTCTACCTACAGTGAGTTCCAGACCTGCCCATCCCCTCACCAGCGTCTCCCCACCCATTGGTAC
CGTTCCAGAAAAACCATTACTCCTTTCCCCGCCCACCCCCTCATTCCTATTGTTCCCTCAGACT
CAGGGGCTCCGTGGATGCCATCCTAACAGGGTGGACACTGCCCACTTCTCTCCAGGAGGTTCTT
GTCTCTGTATGGGCTTGTCTCCCTGCCAGTTTTCTTTTGCTCCATGTCATTTTGTCAGGCTGGT
CATAAGCCGAAGGCAGCTTTAACCAGCCCACAGGGATGACTGCGGAGAAGGCCCCTCTCTGGGC
AAGGAGGGGGTGTTCCTTCTCTAGGCCCATGTACCACAGTCCCCATGATGGTGCAGGCGCTCTC
TAGCCAGGTACCCACATGCTTGTTTTCCCTCTCCTGCCTTATCCCTGTTGGCAGCTCCAGTTCA
ACCATGGAGGGATGTGATGCTGGGCTATGTTTACTAAACCTTCGGGTTTTCAGCCTCTTAAACC
CAGCTTGGATCTCTCGTTATTTGGGAGTGCTAGACTGACTAACCTCTGGTATCTGAGCACAAAC
AGAGGGTGCTGTGGGTCTGCTGGTGGCAGAAGTGTTTCTCCCAGCTTGGTGTCTTCTGCTGGCC
ACTCTTCCTGCTGCCTCTGACTGCTCAGCTTTGTTTTGGTGTGTAGGCCCCAGCTGCTCTCGGG
GGCTGTCTGCCAGCACTTGTTCTCCCAAGACCTTCCACACTTCTTGGCCGCCCCTGTGGCAGGG
GTGGTGGTGTTGGGGCCCCTTAGTCTGGTGAAGGACTGTTGCTGCTGCTTCTCTTCCTTCCTTC
CCCTCCTTGGCTGGTGATCCAGAGCCCTCTGATGACAGCATACTCCTGGCCAGAGAAAAGGACT
TGACTAGACTTTCTGAACTTGAACAGTTTCAGGTTATATTTTAATTTTTTTTTTGTACAGGTTA
ATTCTAATACATTTCAACATACTTTTTTCTCCCCTTGTGTCAATATTTGTTATAGACTAATCGC
CGGGGATTTTTTTTACCTGGTTGGAGGGTGGCATGTGTGTATGTGTGTGTGTATTGTTTTGTTT
TTATAAAGGGAGGTGGAAGTCCTGGACTGATACTAAAGTTCATTGAGGAAAAAGCACATTTTAG
AACAACAACAACAACAAAAATAAAAGTGTAGATTTGATGTA

hide sequence

RefSeq Acc Id:

XM_013359192 ⟹ XP_013214646

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	185,753,573 - 185,780,853 (+)	NCBI
SpeTri2.0	NW_004936525	5,159,157 - 5,186,142 (-)	NCBI

Sequence:

show sequence

GCCCCACTCTTCTAACTTAGACTCTGATGTGCCGCGCAGTGTGCGCAAATTCTGAATCCCGCAG
GCGGTGATGGTGGGTTCTGAATCCGAGACTTAAAACTAGACGAGAAGACCCACTTCATTCTCAC
AAGAAGATGACAACCCACAGAGAATTAACTTCTGTTTACATGCAACTCAGAAGTCTTCTGCAAA
TCATGATCTCAAAGTCAGAGAATGGCAGGTGAACAGAAACCCTCAAGTAACCTTCTGGAACAGT
TTATTTTATTAGCCAAAGGTACCAGTGGCTCAGCCCTCACTGCTCTCATAAGCCAGGTGTTGGA
AGCTCCTGGAGTATATGTCTTTGGAGAGCTGCTGGAGTTGGCCAATGTGCAGGAGCTTGCAGAA
GGAGCAAATGCTGCTTATTTGCAGTTGCTGAACCTGTTTGCCTATGGAACATACCCAGATTATA
TAGCCAACAAGGAGAGCCTGCCAGAACTGAGTGCAGCTCAGCAGAACAAGCTGAAACATCTTAC
CATCGTGAGCTTGGCATCAAGAATGAAGTGTATTCCCTACTCTGTGCTGCTGAAGGATCTGGAA
ATGAGGAATCTCCGAGAATTAGAAGACCTCATCATAGAGGCTGTCTACACTGACATCATCCAGG
GCAAGCTGGACCAGCGAAATCAGCTGCTAGAGGTGGATTTCTGCATTGGCCGTGACATCCGCAA
GAAGGATATCAATAATATTGTCAAGACCTTGCATGAATGGTGTGATGGCTGTGAAGCAGTTCTG
CTGGGCATTGAACAACAGGTCCTGAGAGCCAACCAGTACAAAGAGAACCACCACCGGACTCAGC
AGCAGGTGGAAGCAGAGGTTACCAACATCAAGAAGACACTTAAAGCCACTGCGTCCTCTTCAGC
TCAGGAAATGGAGCAGCAACTTGCTGAGCGGGAGTGTCCCCCTCATGCTGAGCAGAGGCAGCCT
ACCAAGAAGATGTCCAAAGTGAAAGGTCTGGTCTCCAGCCGCCACTAGGACCGGCTGGGGCAGC
TGGCACTCACCAGGCCTGGGTCAGGTGGGGAGGGGACACCAAGGGCCTATTTCCTCCCTTCTCT
ACCTACAGTGAGTTCCAGACCTGCCCATCCCCTCACCAGCGTCTCCCCACCCATTGGTACCGTT
CCAGAAAAACCATTACTCCTTTCCCCGCCCACCCCCTCATTCCTATTGTTCCCTCAGACTCAGG
GGCTCCGTGGATGCCATCCTAACAGGGTGGACACTGCCCACTTCTCTCCAGGAGGTTCTTGTCT
CTGTATGGGCTTGTCTCCCTGCCAGTTTTCTTTTGCTCCATGTCATTTTGTCAGGCTGGTCATA
AGCCGAAGGCAGCTTTAACCAGCCCACAGGGATGACTGCGGAGAAGGCCCCTCTCTGGGCAAGG
AGGGGGTGTTCCTTCTCTAGGCCCATGTACCACAGTCCCCATGATGGTGCAGGCGCTCTCTAGC
CAGGTACCCACATGCTTGTTTTCCCTCTCCTGCCTTATCCCTGTTGGCAGCTCCAGTTCAACCA
TGGAGGGATGTGATGCTGGGCTATGTTTACTAAACCTTCGGGTTTTCAGCCTCTTAAACCCAGC
TTGGATCTCTCGTTATTTGGGAGTGCTAGACTGACTAACCTCTGGTATCTGAGCACAAACAGAG
GGTGCTGTGGGTCTGCTGGTGGCAGAAGTGTTTCTCCCAGCTTGGTGTCTTCTGCTGGCCACTC
TTCCTGCTGCCTCTGACTGCTCAGCTTTGTTTTGGTGTGTAGGCCCCAGCTGCTCTCGGGGGCT
GTCTGCCAGCACTTGTTCTCCCAAGACCTTCCACACTTCTTGGCCGCCCCTGTGGCAGGGGTGG
TGGTGTTGGGGCCCCTTAGTCTGGTGAAGGACTGTTGCTGCTGCTTCTCTTCCTTCCTTCCCCT
CCTTGGCTGGTGATCCAGAGCCCTCTGATGACAGCATACTCCTGGCCAGAGAAAAGGACTTGAC
TAGACTTTCTGAACTTGAACAGTTTCAGGTTATATTTTAATTTTTTTTTTGTACAGGTTAATTC
TAATACATTTCAACATACTTTTTTCTCCCCTTGTGTCAATATTTGTTATAGACTAATCGCCGGG
GATTTTTTTTACCTGGTTGGAGGGTGGCATGTGTGTATGTGTGTGTGTATTGTTTTGTTTTTAT
AAAGGGAGGTGGAAGTCCTGGACTGATACTAAAGTTCATTGAGGAAAAAGCACATTTTAGAACA
ACAACAACAACAAAAATAAAAGTGTAGATTTGATGTA

hide sequence

RefSeq Acc Id:

XM_021727091 ⟹ XP_021582766

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	185,758,185 - 185,780,853 (+)	NCBI
SpeTri2.0	NW_004936525	5,159,157 - 5,180,158 (-)	NCBI

Sequence:

show sequence

TTTATTTTACTATACAAAACTCTTTTCCTTCATTTTGTCATACTCCCCGATTTGCATCATTTAT
GGAGGACACATCTCTGCTTATGTGGGACTCAAGTAGATCTCAAAGTCAGAGAATGGCAGGTGAA
CAGAAACCCTCAAGTAACCTTCTGGAACAGTTTATTTTATTAGCCAAAGGTACCAGTGGCTCAG
CCCTCACTGCTCTCATAAGCCAGGTGTTGGAAGCTCCTGGAGTATATGTCTTTGGAGAGCTGCT
GGAGTTGGCCAATGTGCAGGAGCTTGCAGAAGGAGCAAATGCTGCTTATTTGCAGTTGCTGAAC
CTGTTTGCCTATGGAACATACCCAGATTATATAGCCAACAAGGAGAGCCTGCCAGAACTGAGTG
CAGCTCAGCAGAACAAGCTGAAACATCTTACCATCGTGAGCTTGGCATCAAGAATGAAGTGTAT
TCCCTACTCTGTGCTGCTGAAGGATCTGGAAATGAGGAATCTCCGAGAATTAGAAGACCTCATC
ATAGAGGCTGTCTACACTGACATCATCCAGGGCAAGCTGGACCAGCGAAATCAGCTGCTAGAGG
TGGATTTCTGCATTGGCCGTGACATCCGCAAGAAGGATATCAATAATATTGTCAAGACCTTGCA
TGAATGGTGTGATGGCTGTGAAGCAGTTCTGCTGGGCATTGAACAACAGGTCCTGAGAGCCAAC
CAGTACAAAGAGAACCACCACCGGACTCAGCAGCAGGTGGAAGCAGAGGTTACCAACATCAAGA
AGACACTTAAAGCCACTGCGTCCTCTTCAGCTCAGGAAATGGAGCAGCAACTTGCTGAGCGGGA
GTGTCCCCCTCATGCTGAGCAGAGGCAGCCTACCAAGAAGATGTCCAAAGTGAAAGGTCTGGTC
TCCAGCCGCCACTAGGACCGGCTGGGGCAGCTGGCACTCACCAGGCCTGGGTCAGGTGGGGAGG
GGACACCAAGGGCCTATTTCCTCCCTTCTCTACCTACAGTGAGTTCCAGACCTGCCCATCCCCT
CACCAGCGTCTCCCCACCCATTGGTACCGTTCCAGAAAAACCATTACTCCTTTCCCCGCCCACC
CCCTCATTCCTATTGTTCCCTCAGACTCAGGGGCTCCGTGGATGCCATCCTAACAGGGTGGACA
CTGCCCACTTCTCTCCAGGAGGTTCTTGTCTCTGTATGGGCTTGTCTCCCTGCCAGTTTTCTTT
TGCTCCATGTCATTTTGTCAGGCTGGTCATAAGCCGAAGGCAGCTTTAACCAGCCCACAGGGAT
GACTGCGGAGAAGGCCCCTCTCTGGGCAAGGAGGGGGTGTTCCTTCTCTAGGCCCATGTACCAC
AGTCCCCATGATGGTGCAGGCGCTCTCTAGCCAGGTACCCACATGCTTGTTTTCCCTCTCCTGC
CTTATCCCTGTTGGCAGCTCCAGTTCAACCATGGAGGGATGTGATGCTGGGCTATGTTTACTAA
ACCTTCGGGTTTTCAGCCTCTTAAACCCAGCTTGGATCTCTCGTTATTTGGGAGTGCTAGACTG
ACTAACCTCTGGTATCTGAGCACAAACAGAGGGTGCTGTGGGTCTGCTGGTGGCAGAAGTGTTT
CTCCCAGCTTGGTGTCTTCTGCTGGCCACTCTTCCTGCTGCCTCTGACTGCTCAGCTTTGTTTT
GGTGTGTAGGCCCCAGCTGCTCTCGGGGGCTGTCTGCCAGCACTTGTTCTCCCAAGACCTTCCA
CACTTCTTGGCCGCCCCTGTGGCAGGGGTGGTGGTGTTGGGGCCCCTTAGTCTGGTGAAGGACT
GTTGCTGCTGCTTCTCTTCCTTCCTTCCCCTCCTTGGCTGGTGATCCAGAGCCCTCTGATGACA
GCATACTCCTGGCCAGAGAAAAGGACTTGACTAGACTTTCTGAACTTGAACAGTTTCAGGTTAT
ATTTTAATTTTTTTTTTGTACAGGTTAATTCTAATACATTTCAACATACTTTTTTCTCCCCTTG
TGTCAATATTTGTTATAGACTAATCGCCGGGGATTTTTTTTACCTGGTTGGAGGGTGGCATGTG
TGTATGTGTGTGTGTATTGTTTTGTTTTTATAAAGGGAGGTGGAAGTCCTGGACTGATACTAAA
GTTCATTGAGGAAAAAGCACATTTTAGAACAACAACAACAACAAAAATAAAAGTGTAGATTTGA
TGTA

hide sequence

RefSeq Acc Id:

XM_040268000 ⟹ XP_040123934

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	185,753,573 - 185,780,853 (+)	NCBI

RefSeq Acc Id:

XM_040268001 ⟹ XP_040123935

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	185,764,023 - 185,780,853 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_013214645	(Get FASTA)	NCBI Sequence Viewer
	XP_013214646	(Get FASTA)	NCBI Sequence Viewer
	XP_021582766	(Get FASTA)	NCBI Sequence Viewer
	XP_040123934	(Get FASTA)	NCBI Sequence Viewer
	XP_040123935	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000022182.1
GenBank Protein	KAG3275501	(Get FASTA)	NCBI Sequence Viewer
	KAG3275502	(Get FASTA)	NCBI Sequence Viewer
	KAG3275503	(Get FASTA)	NCBI Sequence Viewer
	KAG3275504	(Get FASTA)	NCBI Sequence Viewer
	KAG3275505	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013214646 ⟸ XM_013359192
- Peptide Label:	isoform X3
- UniProtKB:	I3NCT5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGEQKPSSNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAEGANAAYL QLLNLFAYGTYPDYIANKESLPELSAAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLREL EDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQV LRANQYKENHHRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKV KGLVSSRH hide sequence

RefSeq Acc Id:

XP_013214645 ⟸ XM_013359191

- Peptide Label:

isoform X2

- Sequence:

show sequence

MRSQSQRMAGEQKPSSNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAE
GANAAYLQLLNLFAYGTYPDYIANKESLPELSAAQQNKLKHLTIVSLASRMKCIPYSVLLKDLE
MRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVL
LGIEQQVLRANQYKENHHRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQP
TKKMSKVKGLVSSRH

hide sequence

RefSeq Acc Id:

XP_021582766 ⟸ XM_021727091

- Peptide Label:

isoform X1

- Sequence:

show sequence

MEDTSLLMWDSSRSQSQRMAGEQKPSSNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGEL
LELANVQELAEGANAAYLQLLNLFAYGTYPDYIANKESLPELSAAQQNKLKHLTIVSLASRMKC
IPYSVLLKDLEMRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTL
HEWCDGCEAVLLGIEQQVLRANQYKENHHRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAER
ECPPHAEQRQPTKKMSKVKGLVSSRH

hide sequence

RefSeq Acc Id:	XP_040123934 ⟸ XM_040268000
- Peptide Label:	isoform X3
- UniProtKB:	I3NCT5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040123935 ⟸ XM_040268001
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSSTOP00000022182 ⟸ ENSSTOT00000027405

Protein Domains

PCI

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000022276	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000027405.2	UniProtKB/TrEMBL
InterPro	COPS7/eIF3m	UniProtKB/TrEMBL
	CSN7_helixI	UniProtKB/TrEMBL
	PCI_dom	UniProtKB/TrEMBL
NCBI Gene	Cops7b	ENTREZGENE
PANTHER	PTHR15350	UniProtKB/TrEMBL
	PTHR15350:SF8	UniProtKB/TrEMBL
Pfam	CSN7_HB_subdom	UniProtKB/TrEMBL
	CSN7a_helixI	UniProtKB/TrEMBL
	PCI	UniProtKB/TrEMBL
PROSITE	PCI	UniProtKB/TrEMBL
SMART	PINT	UniProtKB/TrEMBL
UniProt	I3NCT5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar