Cops7b (COP9 signalosome subunit 7B)

Gene: Cops7b (COP9 signalosome subunit 7B) Chinchilla lanigera

Analyze

Symbol:

Cops7b

Name:

COP9 signalosome subunit 7B

RGD ID:

8996651

Description:

INVOLVED IN protein deneddylation (ortholog); ASSOCIATED WITH genetic disease (ortholog); Joubert syndrome 22 (ortholog); osteochondrodysplasia (ortholog); FOUND IN COP9 signalosome (ortholog); nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

COP9 signalosome complex subunit 7b

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	3,967,241 - 3,986,314 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	3,967,241 - 3,991,802 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Joubert syndrome 22 (ISO)

osteochondrodysplasia (ISO)

Perlman syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein deneddylation (ISO)

Cellular Component

COP9 signalosome (ISO)

nucleoplasm (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Cops7b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	3,967,241 - 3,986,314 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	3,967,241 - 3,991,802 (-)	NCBI	ChiLan1.0	ChiLan1.0

COPS7B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	231,781,671 - 231,809,253 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	231,781,671 - 231,809,254 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	232,646,381 - 232,673,963 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	232,359,406 - 232,381,678 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	232,476,666 - 232,498,939	NCBI
Celera	2	226,427,678 - 226,449,946 (+)	NCBI		Celera
Cytogenetic Map	2	q37.1	NCBI
HuRef	2	224,495,756 - 224,515,928 (+)	NCBI		HuRef
CHM1_1	2	232,656,979 - 232,679,248 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	232,266,242 - 232,293,824 (+)	NCBI		T2T-CHM13v2.0

Cops7b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	86,510,363 - 86,534,550 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	86,510,626 - 86,537,097 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	86,582,646 - 86,606,828 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	86,582,904 - 86,609,375 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	88,483,675 - 88,503,075 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	88,418,271 - 88,437,671 (+)	NCBI		MGSCv36	mm8
Celera	1	89,556,717 - 89,576,116 (+)	NCBI		Celera
Cytogenetic Map	1	C5	NCBI
cM Map	1	43.97	NCBI

Cops7b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	94,686,314 - 94,711,903 (+)	NCBI		GRCr8
mRatBN7.2	9	87,238,132 - 87,263,967 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	87,238,375 - 87,263,967 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	95,654,909 - 95,680,466 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	100,783,098 - 100,808,674 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	99,166,666 - 99,192,255 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	93,607,199 - 93,633,064 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	93,607,477 - 93,633,064 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	93,335,116 - 93,361,000 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	85,353,285 - 85,378,872 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	85,541,787 - 85,560,985 (+)	NCBI
Celera	9	84,653,671 - 84,679,234 (+)	NCBI		Celera
Cytogenetic Map	9	q35	NCBI

COPS7B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	134,406,071 - 134,433,795 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	134,421,141 - 134,448,759 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	119,033,879 - 119,061,293 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	237,821,398 - 237,849,340 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	237,821,398 - 237,849,340 (+)	Ensembl	panpan1.1		panPan2

COPS7B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	43,637,170 - 43,663,218 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	43,637,335 - 43,661,654 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	44,130,643 - 44,156,556 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	43,893,737 - 43,919,891 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	43,893,973 - 43,919,891 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	43,821,166 - 43,847,074 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	43,664,546 - 43,690,798 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	43,819,902 - 43,845,831 (+)	NCBI		UU_Cfam_GSD_1.0

Cops7b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	185,753,572 - 185,780,853 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936525	5,156,785 - 5,182,012 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936525	5,159,157 - 5,186,142 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COPS7B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	132,427,173 - 132,450,689 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	132,427,023 - 132,451,199 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	146,193,566 - 146,201,261 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

COPS7B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	117,809,981 - 117,837,768 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	117,817,405 - 117,836,665 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	81,601,415 - 81,629,109 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cops7b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624843	4,780,374 - 4,801,692 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624843	4,776,689 - 4,801,692 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005395389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005395390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005395391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005395392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013519955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01044671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01044672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01177150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000013784 ⟹ ENSCLAP00000013629

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955453	3,967,241 - 3,986,314 (-)	Ensembl

RefSeq Acc Id:

XM_005395389 ⟹ XP_005395446

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955453	3,967,241 - 3,986,997 (-)	NCBI

Sequence:

show sequence

GGCATGGAGCGGGGTGCGGGGAACCTTGTGTGGGCGGAACTCGAGTGCAGCGACAGGAGGCTTC
CGGGGGAGCCGCTAGGGCGACGGGTCGGCGGAGACAGAAAAGCGCCGGACGCCGGGCCGATCAT
GGACGCTTGACAACCTGGGGACAGGCGCTGGAAGGCCGAGCCAGCGACTGAAAGGACGGAGAGG
CGGCGCGGACAGATCTTAAAGCCAGAGAATGGCAGGTGAACAAAAACCTTCAAGTAACCTCCTG
GAACAGTTTATTTTATTAGCCAAAGGTACCAACGGGTCAGCCCTGACTGCTCTCATAAGCCAGG
TATTGGAGGCTCCTGGAGTGTACGTCTTTGGAGAATTACTGGAGCTGGCCAACGTTCAGGAGCT
TGCAGAAGGAGCTAATGCTGCTTACTTGCAGTTGCTGAACTTGTTTGCCTATGGGACGTACCCG
GACTACATAGCCAACAAGGAGAGCCTGCCAGAACTGAGCACAGCCCAGCAGAACAAGCTGAAAC
ACCTTACCATCGTGAGCCTGGCATCAAGGATGAAGTGTATCCCCTACTCTGTGCTGCTGAAGGA
CCTGGAGATGAGGAATCTCCGGGAACTGGAAGACCTCATCATCGAGGCCGTCTACACTGACATC
ATCCAGGGCAAGCTGGACCAGCGGAACCAGCTGTTAGAAGTGGATTTCTGCATTGGCCGTGACA
TCCGAAAGAAGGATATCAATAACATTGTCAAGACCTTGCATGAATGGTGCGATGGCTGTGAAGC
GGTCCTGCTAGGCATCGAGCAGCAAGTTCTGAGAGCCAACCAGTACAAGGAGAACCACCACCGC
ACGCAACAGCAGGTGGAGGCGGAGGTTACCAACATTAAGAAGACGCTGAAGGCCACCGCATCCT
CCTCGGCTCAGGAAATGGAGCAGCAGCTGACTGAGCGGGAGTGCCCGCCGCATGCCGAGCAGAG
GCAGCCCGCTAAGAAGATGTCCAAAGTGAAAAGTCTAGTCTCCAGCCGCCACTAGGGCCAGCTG
GGGCAGCTGGCACTCACCAGGCCTGGGTCCGGTGGGGAGGGGACACTGCGGGCCTATTTCCTCC
ACCTCTCTAGCCGCAGAGAGTTCCAGACCTGCCCGCCCCTCACTAGCGCATCCCCACCCGTTGG
CACTGTTCCAGAAAAGCCGCCGCCCCTGCCTGCCCCACACACCCCTTCCCCAGCTGGTCCCTTC
AGACTCAGGGGCTGCACGGATGCCATCCTTCCAGGGTCGGCGCTGCGGCCCCCTCCACGAGGTC
CTTACCTCTGCGTGGGGTGCGCCTCCCTCCTGGTCGTGCTTTTGCTCCGTGTCCTTTTGTCAGG
CTGGTCCCATGCGGGGGCAGCTTTACCCTTAACCAGCCTGCAGGGATGAGCGCACCGGCCCCTC
CCTGCACGAGGAGGGGCTTCTCTGCCCCCTCCCCCAGTTCCCACCATGGTGCAGGTGACCTCTA
GCTAGGTACCCACCCACTCTGCTCCCCACCTGCCTTAGCCCTGCTGGCAGCTCCAGGTGAGCCG
CAGAGGGGTGTGGTGCTGGGCTGTGTTTACTCAACCTGCGGGTTTCAGCCTCTCCAGTCCAGCT
CGCATCCCTCGAGAGTGGGAGCTTGGGGTTGACTGAGCCGGCGTCCGAGCGGAGGGAGGGTACT
GTGGGTCTGCGGCTGGCGGAAGCTGTGCCCGTTGGTGGCCTCTGCTGGCACTCATCCCGTTCCC
TCTGACCGCTCAGCCTTCAGTTGCCGTGGGCCCAGCTGCCCCTAGCTGACAGCGCCTGCTCCCC
TGGCCGCGCCTGTGGTGGAGATGGTGGCCCGAGCCCCCTCAGCCTGGTGAAAGACTCGCTGCTC
TGTCCCGACTCTTGGCTGGTGACCCGAAGCCTTCTGACCACAGCGTACTCCTGGCCAGAGAAAG
GACTTGACTAGACTTTCTGAACTTGAACAGTTTCAGGTTATATTTTAATTTTTTTTTGTACAGG
TTGATTCTAATACATTTCAACATGGTTTTTC

hide sequence

RefSeq Acc Id:

XM_005395390 ⟹ XP_005395447

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955453	3,967,241 - 3,986,314 (-)	NCBI

Sequence:

show sequence

CCGAAGTTTCTCCCGTTTCCTTCCCTCCTGGCCATCCCTGGCGTCTTCCGTTTAGTCTGTTGGC
CGAGATCTCCATCTGTCTGTTCCCACGTGTCCACTTGGAAGGGCAGTTTTTGTTCCTTCTTTCC
TAACCCTCGCCGCTTGCCTTCCTCTCCTCCCGTTCCTGCTGTCCTGTCACCCTCTCCTCTTCCT
CCCCTTTCCCGTTCCTCAGAAGCCTTTGTTCCTGAGCGCTTCTGTTTCTGACAGGACCTGCGTA
GGAAACGGAAGTCAGGCAACACTTTAATAGTGAGGAACAGTTGTTGTTAGGTGTACCCAACTCC
ACAGGAAAACTTAGTTTCTCTTGCACCAAATTAACCTTCTTTGAATTGTCCTTTGCTTCACTCT
TCTATGTAGACCTTTCTGTCATTTTGTCACACTTCCCAATGTTTCATTCGTGGAGGACGTGTCT
TGTCTTACGTAGAGCTCGTGCAGAGTAGGTATTCTGTGTGCCCACAGACATTCAGCCTGCACTT
AGATCACAGTTGAGGACCCTCACGAATCTACTGGCTTGGGGATGCAGTACAGTATCTGCATTGT
TTTCTCATCGTGTTGTTGTTAAGGTTTTGTATAAGTTCTGAAGTCTGGTTGGTAAATCATATCA
GTAGAAGGCCAAATAAAGGGACCTTCCCCCCCTTATACAGTGTGTATTTTCTAAGTTTGAACTT
GTTGCTTATCTTTCATAATAGGTTTTCTCCATTTCCTGTGCTTAAATGATGCCCCCCCATGGAA
CCCAAGGCCTTGTGCTTGCAAAGCTCATGCTGTACCACATCTGCAGCTCTTAAATAACTTCTTT
GGTTAAGTGAAGCGTAGCTCTTGTCTATTTTTTGTATTTTATTTGTGTCTGACGGTAGATGGGG
TCCTGATGACACATGGAAGCTGAAATGAATTGCCTCTTAACCAGAGCCTATAAATCAGATCTTA
AAGCCAGAGAATGGCAGGTGAACAAAAACCTTCAAGTAACCTCCTGGAACAGTTTATTTTATTA
GCCAAAGGTACCAACGGGTCAGCCCTGACTGCTCTCATAAGCCAGGTATTGGAGGCTCCTGGAG
TGTACGTCTTTGGAGAATTACTGGAGCTGGCCAACGTTCAGGAGCTTGCAGAAGGAGCTAATGC
TGCTTACTTGCAGTTGCTGAACTTGTTTGCCTATGGGACGTACCCGGACTACATAGCCAACAAG
GAGAGCCTGCCAGAACTGAGCACAGCCCAGCAGAACAAGCTGAAACACCTTACCATCGTGAGCC
TGGCATCAAGGATGAAGTGTATCCCCTACTCTGTGCTGCTGAAGGACCTGGAGATGAGGAATCT
CCGGGAACTGGAAGACCTCATCATCGAGGCCGTCTACACTGACATCATCCAGGGCAAGCTGGAC
CAGCGGAACCAGCTGTTAGAAGTGGATTTCTGCATTGGCCGTGACATCCGAAAGAAGGATATCA
ATAACATTGTCAAGACCTTGCATGAATGGTGCGATGGCTGTGAAGCGGTCCTGCTAGGCATCGA
GCAGCAAGTTCTGAGAGCCAACCAGTACAAGGAGAACCACCACCGCACGCAACAGCAGGTGGAG
GCGGAGGTTACCAACATTAAGAAGACGCTGAAGGCCACCGCATCCTCCTCGGCTCAGGAAATGG
AGCAGCAGCTGACTGAGCGGGAGTGCCCGCCGCATGCCGAGCAGAGGCAGCCCGCTAAGAAGAT
GTCCAAAGTGAAAAGTCTAGTCTCCAGCCGCCACTAGGGCCAGCTGGGGCAGCTGGCACTCACC
AGGCCTGGGTCCGGTGGGGAGGGGACACTGCGGGCCTATTTCCTCCACCTCTCTAGCCGCAGAG
AGTTCCAGACCTGCCCGCCCCTCACTAGCGCATCCCCACCCGTTGGCACTGTTCCAGAAAAGCC
GCCGCCCCTGCCTGCCCCACACACCCCTTCCCCAGCTGGTCCCTTCAGACTCAGGGGCTGCACG
GATGCCATCCTTCCAGGGTCGGCGCTGCGGCCCCCTCCACGAGGTCCTTACCTCTGCGTGGGGT
GCGCCTCCCTCCTGGTCGTGCTTTTGCTCCGTGTCCTTTTGTCAGGCTGGTCCCATGCGGGGGC
AGCTTTACCCTTAACCAGCCTGCAGGGATGAGCGCACCGGCCCCTCCCTGCACGAGGAGGGGCT
TCTCTGCCCCCTCCCCCAGTTCCCACCATGGTGCAGGTGACCTCTAGCTAGGTACCCACCCACT
CTGCTCCCCACCTGCCTTAGCCCTGCTGGCAGCTCCAGGTGAGCCGCAGAGGGGTGTGGTGCTG
GGCTGTGTTTACTCAACCTGCGGGTTTCAGCCTCTCCAGTCCAGCTCGCATCCCTCGAGAGTGG
GAGCTTGGGGTTGACTGAGCCGGCGTCCGAGCGGAGGGAGGGTACTGTGGGTCTGCGGCTGGCG
GAAGCTGTGCCCGTTGGTGGCCTCTGCTGGCACTCATCCCGTTCCCTCTGACCGCTCAGCCTTC
AGTTGCCGTGGGCCCAGCTGCCCCTAGCTGACAGCGCCTGCTCCCCTGGCCGCGCCTGTGGTGG
AGATGGTGGCCCGAGCCCCCTCAGCCTGGTGAAAGACTCGCTGCTCTGTCCCGACTCTTGGCTG
GTGACCCGAAGCCTTCTGACCACAGCGTACTCCTGGCCAGAGAAAGGACTTGACTAGACTTTCT
GAACTTGAACAGTTTCAGGTTATATTTTAATTTTTTTTTGTACAGGTTGATTCTAATACATTTC
AACATGGTTTTTC

hide sequence

RefSeq Acc Id:

XM_005395391 ⟹ XP_005395448

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955453	3,967,241 - 3,991,802 (-)	NCBI

Sequence:

show sequence

AGCGCCCCGGTCCTCTAACTTAGACCCCAGTGTGCCGCGCCGTGTGCGCAAATTCAGAACCCAG
CCGGCGGGTTCTGCGGCTTCCCGATACGGAGGTTTGGAATCGGGCGGAAAGACTCTCTTCATCC
TCAAGAAGAGATGACAGCCCACAGAGAATTAACTTTTGTTTACATGGAACTCAGAAGTCTCTTG
CAAATCACGGCTCCTTTCCGCCCCGCTCCCGGACTGCAGCCAGGCCGCGATCCTCCTCTCCCGC
CCGCGCCCCACGCGAGATCTTAAAGCCAGAGAATGGCAGGTGAACAAAAACCTTCAAGTAACCT
CCTGGAACAGTTTATTTTATTAGCCAAAGGTACCAACGGGTCAGCCCTGACTGCTCTCATAAGC
CAGGTATTGGAGGCTCCTGGAGTGTACGTCTTTGGAGAATTACTGGAGCTGGCCAACGTTCAGG
AGCTTGCAGAAGGAGCTAATGCTGCTTACTTGCAGTTGCTGAACTTGTTTGCCTATGGGACGTA
CCCGGACTACATAGCCAACAAGGAGAGCCTGCCAGAACTGAGCACAGCCCAGCAGAACAAGCTG
AAACACCTTACCATCGTGAGCCTGGCATCAAGGATGAAGTGTATCCCCTACTCTGTGCTGCTGA
AGGACCTGGAGATGAGGAATCTCCGGGAACTGGAAGACCTCATCATCGAGGCCGTCTACACTGA
CATCATCCAGGGCAAGCTGGACCAGCGGAACCAGCTGTTAGAAGTGGATTTCTGCATTGGCCGT
GACATCCGAAAGAAGGATATCAATAACATTGTCAAGACCTTGCATGAATGGTGCGATGGCTGTG
AAGCGGTCCTGCTAGGCATCGAGCAGCAAGTTCTGAGAGCCAACCAGTACAAGGAGAACCACCA
CCGCACGCAACAGCAGGTGGAGGCGGAGGTTACCAACATTAAGAAGACGCTGAAGGCCACCGCA
TCCTCCTCGGCTCAGGAAATGGAGCAGCAGCTGACTGAGCGGGAGTGCCCGCCGCATGCCGAGC
AGAGGCAGCCCGCTAAGAAGATGTCCAAAGTGAAAAGTCTAGTCTCCAGCCGCCACTAGGGCCA
GCTGGGGCAGCTGGCACTCACCAGGCCTGGGTCCGGTGGGGAGGGGACACTGCGGGCCTATTTC
CTCCACCTCTCTAGCCGCAGAGAGTTCCAGACCTGCCCGCCCCTCACTAGCGCATCCCCACCCG
TTGGCACTGTTCCAGAAAAGCCGCCGCCCCTGCCTGCCCCACACACCCCTTCCCCAGCTGGTCC
CTTCAGACTCAGGGGCTGCACGGATGCCATCCTTCCAGGGTCGGCGCTGCGGCCCCCTCCACGA
GGTCCTTACCTCTGCGTGGGGTGCGCCTCCCTCCTGGTCGTGCTTTTGCTCCGTGTCCTTTTGT
CAGGCTGGTCCCATGCGGGGGCAGCTTTACCCTTAACCAGCCTGCAGGGATGAGCGCACCGGCC
CCTCCCTGCACGAGGAGGGGCTTCTCTGCCCCCTCCCCCAGTTCCCACCATGGTGCAGGTGACC
TCTAGCTAGGTACCCACCCACTCTGCTCCCCACCTGCCTTAGCCCTGCTGGCAGCTCCAGGTGA
GCCGCAGAGGGGTGTGGTGCTGGGCTGTGTTTACTCAACCTGCGGGTTTCAGCCTCTCCAGTCC
AGCTCGCATCCCTCGAGAGTGGGAGCTTGGGGTTGACTGAGCCGGCGTCCGAGCGGAGGGAGGG
TACTGTGGGTCTGCGGCTGGCGGAAGCTGTGCCCGTTGGTGGCCTCTGCTGGCACTCATCCCGT
TCCCTCTGACCGCTCAGCCTTCAGTTGCCGTGGGCCCAGCTGCCCCTAGCTGACAGCGCCTGCT
CCCCTGGCCGCGCCTGTGGTGGAGATGGTGGCCCGAGCCCCCTCAGCCTGGTGAAAGACTCGCT
GCTCTGTCCCGACTCTTGGCTGGTGACCCGAAGCCTTCTGACCACAGCGTACTCCTGGCCAGAG
AAAGGACTTGACTAGACTTTCTGAACTTGAACAGTTTCAGGTTATATTTTAATTTTTTTTTGTA
CAGGTTGATTCTAATACATTTCAACATGGTTTTTC

hide sequence

RefSeq Acc Id:

XM_005395392 ⟹ XP_005395449

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955453	3,967,241 - 3,986,539 (-)	NCBI

Sequence:

show sequence

CCTTCGGCCAACGGGCTGCGGCTGAGCTCGCGGCGTGTGCGGCCCGGCGGCTGCCCCTTCGCCC
GCCCCGGCCCATCAAATTAGCACCCTCCCCTGTCGGGAATTCGCCCCGCTGGGTCCCCCGCGCC
GCCTCGGGCCCTCCCACTCCTGGGAAAACGACCATCACCCGCGTCCGTGCTCTGCCTCCACGGG
CTTTGCTGTCTAGGTTGAGATCTTAAAGCCAGAGAATGGCAGGTGAACAAAAACCTTCAAGTAA
CCTCCTGGAACAGTTTATTTTATTAGCCAAAGGTACCAACGGGTCAGCCCTGACTGCTCTCATA
AGCCAGGTATTGGAGGCTCCTGGAGTGTACGTCTTTGGAGAATTACTGGAGCTGGCCAACGTTC
AGGAGCTTGCAGAAGGAGCTAATGCTGCTTACTTGCAGTTGCTGAACTTGTTTGCCTATGGGAC
GTACCCGGACTACATAGCCAACAAGGAGAGCCTGCCAGAACTGAGCACAGCCCAGCAGAACAAG
CTGAAACACCTTACCATCGTGAGCCTGGCATCAAGGATGAAGTGTATCCCCTACTCTGTGCTGC
TGAAGGACCTGGAGATGAGGAATCTCCGGGAACTGGAAGACCTCATCATCGAGGCCGTCTACAC
TGACATCATCCAGGGCAAGCTGGACCAGCGGAACCAGCTGTTAGAAGTGGATTTCTGCATTGGC
CGTGACATCCGAAAGAAGGATATCAATAACATTGTCAAGACCTTGCATGAATGGTGCGATGGCT
GTGAAGCGGTCCTGCTAGGCATCGAGCAGCAAGTTCTGAGAGCCAACCAGTACAAGGAGAACCA
CCACCGCACGCAACAGCAGGTGGAGGCGGAGGTTACCAACATTAAGAAGACGCTGAAGGCCACC
GCATCCTCCTCGGCTCAGGAAATGGAGCAGCAGCTGACTGAGCGGGAGTGCCCGCCGCATGCCG
AGCAGAGGCAGCCCGCTAAGAAGATGTCCAAAGTGAAAAGTCTAGTCTCCAGCCGCCACTAGGG
CCAGCTGGGGCAGCTGGCACTCACCAGGCCTGGGTCCGGTGGGGAGGGGACACTGCGGGCCTAT
TTCCTCCACCTCTCTAGCCGCAGAGAGTTCCAGACCTGCCCGCCCCTCACTAGCGCATCCCCAC
CCGTTGGCACTGTTCCAGAAAAGCCGCCGCCCCTGCCTGCCCCACACACCCCTTCCCCAGCTGG
TCCCTTCAGACTCAGGGGCTGCACGGATGCCATCCTTCCAGGGTCGGCGCTGCGGCCCCCTCCA
CGAGGTCCTTACCTCTGCGTGGGGTGCGCCTCCCTCCTGGTCGTGCTTTTGCTCCGTGTCCTTT
TGTCAGGCTGGTCCCATGCGGGGGCAGCTTTACCCTTAACCAGCCTGCAGGGATGAGCGCACCG
GCCCCTCCCTGCACGAGGAGGGGCTTCTCTGCCCCCTCCCCCAGTTCCCACCATGGTGCAGGTG
ACCTCTAGCTAGGTACCCACCCACTCTGCTCCCCACCTGCCTTAGCCCTGCTGGCAGCTCCAGG
TGAGCCGCAGAGGGGTGTGGTGCTGGGCTGTGTTTACTCAACCTGCGGGTTTCAGCCTCTCCAG
TCCAGCTCGCATCCCTCGAGAGTGGGAGCTTGGGGTTGACTGAGCCGGCGTCCGAGCGGAGGGA
GGGTACTGTGGGTCTGCGGCTGGCGGAAGCTGTGCCCGTTGGTGGCCTCTGCTGGCACTCATCC
CGTTCCCTCTGACCGCTCAGCCTTCAGTTGCCGTGGGCCCAGCTGCCCCTAGCTGACAGCGCCT
GCTCCCCTGGCCGCGCCTGTGGTGGAGATGGTGGCCCGAGCCCCCTCAGCCTGGTGAAAGACTC
GCTGCTCTGTCCCGACTCTTGGCTGGTGACCCGAAGCCTTCTGACCACAGCGTACTCCTGGCCA
GAGAAAGGACTTGACTAGACTTTCTGAACTTGAACAGTTTCAGGTTATATTTTAATTTTTTTTT
GTACAGGTTGATTCTAATACATTTCAACATGGTTTTTC

hide sequence

RefSeq Acc Id:

XM_013519955 ⟹ XP_013375409

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955453	3,967,241 - 3,991,802 (-)	NCBI

Sequence:

show sequence

AGCGCCCCGGTCCTCTAACTTAGACCCCAGTGTGCCGCGCCGTGTGCGCAAATTCAGAACCCAG
CCGGCGGGTTCTGCGGCTTCCCGATACGGAGGTTTGGAATCGGGCGGAAAGACTCTCTTCATCC
TCAAGAAGAGATGACAGCCCACAGAGAATTAACTTTTGTTTACATGGAACTCAGAAGTCTCTTG
CAAATCACGATCTTAAAGCCAGAGAATGGCAGGTGAACAAAAACCTTCAAGTAACCTCCTGGAA
CAGTTTATTTTATTAGCCAAAGGTACCAACGGGTCAGCCCTGACTGCTCTCATAAGCCAGGTAT
TGGAGGCTCCTGGAGTGTACGTCTTTGGAGAATTACTGGAGCTGGCCAACGTTCAGGAGCTTGC
AGAAGGAGCTAATGCTGCTTACTTGCAGTTGCTGAACTTGTTTGCCTATGGGACGTACCCGGAC
TACATAGCCAACAAGGAGAGCCTGCCAGAACTGAGCACAGCCCAGCAGAACAAGCTGAAACACC
TTACCATCGTGAGCCTGGCATCAAGGATGAAGTGTATCCCCTACTCTGTGCTGCTGAAGGACCT
GGAGATGAGGAATCTCCGGGAACTGGAAGACCTCATCATCGAGGCCGTCTACACTGACATCATC
CAGGGCAAGCTGGACCAGCGGAACCAGCTGTTAGAAGTGGATTTCTGCATTGGCCGTGACATCC
GAAAGAAGGATATCAATAACATTGTCAAGACCTTGCATGAATGGTGCGATGGCTGTGAAGCGGT
CCTGCTAGGCATCGAGCAGCAAGTTCTGAGAGCCAACCAGTACAAGGAGAACCACCACCGCACG
CAACAGCAGGTGGAGGCGGAGGTTACCAACATTAAGAAGACGCTGAAGGCCACCGCATCCTCCT
CGGCTCAGGAAATGGAGCAGCAGCTGACTGAGCGGGAGTGCCCGCCGCATGCCGAGCAGAGGCA
GCCCGCTAAGAAGATGTCCAAAGTGAAAAGTCTAGTCTCCAGCCGCCACTAGGGCCAGCTGGGG
CAGCTGGCACTCACCAGGCCTGGGTCCGGTGGGGAGGGGACACTGCGGGCCTATTTCCTCCACC
TCTCTAGCCGCAGAGAGTTCCAGACCTGCCCGCCCCTCACTAGCGCATCCCCACCCGTTGGCAC
TGTTCCAGAAAAGCCGCCGCCCCTGCCTGCCCCACACACCCCTTCCCCAGCTGGTCCCTTCAGA
CTCAGGGGCTGCACGGATGCCATCCTTCCAGGGTCGGCGCTGCGGCCCCCTCCACGAGGTCCTT
ACCTCTGCGTGGGGTGCGCCTCCCTCCTGGTCGTGCTTTTGCTCCGTGTCCTTTTGTCAGGCTG
GTCCCATGCGGGGGCAGCTTTACCCTTAACCAGCCTGCAGGGATGAGCGCACCGGCCCCTCCCT
GCACGAGGAGGGGCTTCTCTGCCCCCTCCCCCAGTTCCCACCATGGTGCAGGTGACCTCTAGCT
AGGTACCCACCCACTCTGCTCCCCACCTGCCTTAGCCCTGCTGGCAGCTCCAGGTGAGCCGCAG
AGGGGTGTGGTGCTGGGCTGTGTTTACTCAACCTGCGGGTTTCAGCCTCTCCAGTCCAGCTCGC
ATCCCTCGAGAGTGGGAGCTTGGGGTTGACTGAGCCGGCGTCCGAGCGGAGGGAGGGTACTGTG
GGTCTGCGGCTGGCGGAAGCTGTGCCCGTTGGTGGCCTCTGCTGGCACTCATCCCGTTCCCTCT
GACCGCTCAGCCTTCAGTTGCCGTGGGCCCAGCTGCCCCTAGCTGACAGCGCCTGCTCCCCTGG
CCGCGCCTGTGGTGGAGATGGTGGCCCGAGCCCCCTCAGCCTGGTGAAAGACTCGCTGCTCTGT
CCCGACTCTTGGCTGGTGACCCGAAGCCTTCTGACCACAGCGTACTCCTGGCCAGAGAAAGGAC
TTGACTAGACTTTCTGAACTTGAACAGTTTCAGGTTATATTTTAATTTTTTTTTGTACAGGTTG
ATTCTAATACATTTCAACATGGTTTTTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005395446	(Get FASTA)	NCBI Sequence Viewer
	XP_005395447	(Get FASTA)	NCBI Sequence Viewer
	XP_005395448	(Get FASTA)	NCBI Sequence Viewer
	XP_005395449	(Get FASTA)	NCBI Sequence Viewer
	XP_013375409	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000013629
	ENSCLAP00000013629.1

RefSeq Acc Id:

XP_005395448 ⟸ XM_005395391

- UniProtKB:

A0A8C2VI38 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGEQKPSSNLLEQFILLAKGTNGSALTALISQVLEAPGVYVFGELLELANVQELAEGANAAYL
QLLNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLREL
EDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQV
LRANQYKENHHRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLTERECPPHAEQRQPAKKMSKV
KSLVSSRH

hide sequence

RefSeq Acc Id:

XP_005395446 ⟸ XM_005395389

- UniProtKB:

A0A8C2VI38 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGEQKPSSNLLEQFILLAKGTNGSALTALISQVLEAPGVYVFGELLELANVQELAEGANAAYL
QLLNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLREL
EDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQV
LRANQYKENHHRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLTERECPPHAEQRQPAKKMSKV
KSLVSSRH

hide sequence

RefSeq Acc Id:

XP_005395449 ⟸ XM_005395392

- UniProtKB:

A0A8C2VI38 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGEQKPSSNLLEQFILLAKGTNGSALTALISQVLEAPGVYVFGELLELANVQELAEGANAAYL
QLLNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLREL
EDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQV
LRANQYKENHHRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLTERECPPHAEQRQPAKKMSKV
KSLVSSRH

hide sequence

RefSeq Acc Id:

XP_005395447 ⟸ XM_005395390

- UniProtKB:

A0A8C2VI38 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGEQKPSSNLLEQFILLAKGTNGSALTALISQVLEAPGVYVFGELLELANVQELAEGANAAYL
QLLNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLREL
EDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQV
LRANQYKENHHRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLTERECPPHAEQRQPAKKMSKV
KSLVSSRH

hide sequence

RefSeq Acc Id:

XP_013375409 ⟸ XM_013519955

- UniProtKB:

A0A8C2VI38 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGEQKPSSNLLEQFILLAKGTNGSALTALISQVLEAPGVYVFGELLELANVQELAEGANAAYL
QLLNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLREL
EDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQV
LRANQYKENHHRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLTERECPPHAEQRQPAKKMSKV
KSLVSSRH

hide sequence

RefSeq Acc Id:

ENSCLAP00000013629 ⟸ ENSCLAT00000013784

Protein Domains

PCI

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000009412	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000013784	ENTREZGENE
	ENSCLAT00000013784.1	UniProtKB/TrEMBL
InterPro	COPS7/eIF3m	UniProtKB/TrEMBL
	CSN7_helixI	UniProtKB/TrEMBL
	PCI_dom	UniProtKB/TrEMBL
NCBI Gene	Cops7b	ENTREZGENE
PANTHER	PTHR15350	UniProtKB/TrEMBL
	PTHR15350:SF8	UniProtKB/TrEMBL
Pfam	CSN7a_helixI	UniProtKB/TrEMBL
	PCI	UniProtKB/TrEMBL
PROSITE	PCI	UniProtKB/TrEMBL
SMART	PINT	UniProtKB/TrEMBL
UniProt	A0A8C2VI38	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar