Ankfn1 (ankyrin repeat and fibronectin type III domain containing 1) - Rat Genome Database

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Gene: Ankfn1 (ankyrin repeat and fibronectin type III domain containing 1) Ictidomys tridecemlineatus
Analyze
Symbol: Ankfn1
Name: ankyrin repeat and fibronectin type III domain containing 1
RGD ID: 12439230
Description: INVOLVED IN behavioral fear response (ortholog); equilibrioception (ortholog); locomotor rhythm (ortholog); ASSOCIATED WITH genetic disease (ortholog); Stapes Ankylosis with Broad Thumbs and Toes (ortholog); FOUND IN spindle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ankyrin repeat and fibronectin type-III domain-containing protein 1; ankyrin-repeat and fibronectin type III domain containing 1; LOC101960644; LOC101960936; uncharacterized LOC101960644; uncharacterized protein LOC101960644
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560230,361,202 - 30,739,656 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364906,371,204 - 6,632,690 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364906,341,849 - 6,494,377 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
spindle  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ankfn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560230,361,202 - 30,739,656 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364906,371,204 - 6,632,690 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364906,341,849 - 6,494,377 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKFN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381756,046,077 - 56,517,016 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1755,882,301 - 56,517,016 (+)EnsemblGRCh38hg38GRCh38
GRCh371754,230,836 - 54,594,377 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361751,585,835 - 51,915,006 (+)NCBINCBI36Build 36hg18NCBI36
Celera1750,692,552 - 51,021,724 (+)NCBICelera
Cytogenetic Map17q22NCBI
HuRef1749,590,661 - 49,920,823 (+)NCBIHuRef
CHM1_11754,295,756 - 54,624,936 (+)NCBICHM1_1
T2T-CHM13v2.01756,922,200 - 57,393,142 (+)NCBIT2T-CHM13v2.0
Ankfn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391189,280,918 - 89,668,727 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1189,281,049 - 89,732,092 (-)EnsemblGRCm39 Ensembl
GRCm381189,390,092 - 89,777,901 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1189,390,223 - 89,841,266 (-)EnsemblGRCm38mm10GRCm38
MGSCv371189,282,400 - 89,402,034 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361189,237,176 - 89,356,810 (-)NCBIMGSCv36mm8
Celera1199,044,016 - 99,164,076 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1154.34NCBI
Ankfn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81074,711,284 - 75,099,954 (-)NCBIGRCr8
mRatBN7.21074,214,143 - 74,602,825 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1074,218,915 - 74,663,295 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01076,901,681 - 77,210,042 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1076,903,325 - 76,930,631 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01076,824,370 - 77,071,775 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1073,119,235 - 73,424,418 (-)NCBICelera
Cytogenetic Map10q26NCBI
Ankfn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554516,305,394 - 6,571,389 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554516,269,168 - 6,656,763 (-)NCBIChiLan1.0ChiLan1.0
ANKFN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21972,328,266 - 72,688,260 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11777,138,454 - 77,498,548 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01750,232,065 - 50,592,044 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11755,095,480 - 55,420,599 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1755,166,165 - 55,449,215 (+)Ensemblpanpan1.1panPan2
ANKFN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1931,093,638 - 31,364,315 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl931,055,348 - 31,386,790 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha930,334,298 - 30,626,943 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0931,901,572 - 32,194,395 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl931,762,089 - 32,194,395 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1930,687,635 - 30,979,993 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0930,971,338 - 31,263,802 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0931,054,421 - 31,347,435 (+)NCBIUU_Cfam_GSD_1.0
ANKFN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1232,321,340 - 32,821,340 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11232,479,469 - 32,823,527 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21233,326,444 - 33,635,120 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANKFN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11636,928,574 - 37,422,278 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1636,929,938 - 37,223,997 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660777,724,684 - 7,994,399 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ankfn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479511,447,941 - 11,617,312 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Ensembl Acc Id: ENSSTOT00000010286   ⟹   ENSSTOP00000009230
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364906,371,303 - 6,632,690 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000036292   ⟹   ENSSTOP00000026301
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364906,371,204 - 6,488,727 (-)Ensembl
RefSeq Acc Id: XM_040269003   ⟹   XP_040124937
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560230,442,224 - 30,739,656 (+)NCBI
RefSeq Acc Id: XM_040269004   ⟹   XP_040124938
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560230,442,811 - 30,739,656 (+)NCBI
RefSeq Acc Id: XM_040269005   ⟹   XP_040124939
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560230,442,224 - 30,739,656 (+)NCBI
RefSeq Acc Id: XM_040269006   ⟹   XP_040124940
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560230,361,202 - 30,739,656 (+)NCBI
RefSeq Acc Id: XM_040269007   ⟹   XP_040124941
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560230,699,341 - 30,739,656 (+)NCBI
RefSeq Acc Id: XP_040124940   ⟸   XM_040269006
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040124937   ⟸   XM_040269003
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040124939   ⟸   XM_040269005
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040124938   ⟸   XM_040269004
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040124941   ⟸   XM_040269007
- Peptide Label: isoform X4
- UniProtKB: I3NDF6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000009230   ⟸   ENSSTOT00000010286
Ensembl Acc Id: ENSSTOP00000026301   ⟸   ENSSTOT00000036292
Protein Domains
Fibronectin type-III


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010280 Ensembl, UniProtKB/TrEMBL
  ENSSTOG00000019503 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010286.3 UniProtKB/TrEMBL
  ENSSTOT00000023072.2 UniProtKB/TrEMBL
  ENSSTOT00000036292.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
InterPro ANKFN1 UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
NCBI Gene LOC101960936 ENTREZGENE
PANTHER ANKYRIN REPEAT AND FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR21437 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A287CYE9_ICTTR UniProtKB/TrEMBL
  I3MF73_ICTTR UniProtKB/TrEMBL
  I3NDF6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-14 Ankfn1  ankyrin repeat and fibronectin type III domain containing 1  LOC101960644  uncharacterized LOC101960644  Data merged from RGD:12609820 737654 PROVISIONAL
2017-07-13 Ankfn1  ankyrin repeat and fibronectin type III domain containing 1  LOC101960936  ankyrin repeat and fibronectin type-III domain-containing protein 1  Symbol and/or name change 5135510 APPROVED