B3GNT8 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8) - Rat Genome Database

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Gene: B3GNT8 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8) Canis lupus familiaris
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Symbol: B3GNT8
Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8
RGD ID: 12416393
Description: ENCODES a protein that exhibits glycosyltransferase activity (inferred); hexosyltransferase activity (inferred); protein N-acetylglucosaminyltransferase activity (inferred); INVOLVED IN poly-N-acetyllactosamine biosynthetic process (inferred); protein glycosylation (inferred); ASSOCIATED WITH Carpenter Syndrome 2 (ortholog); congenital hypoplastic anemia (ortholog); craniosynostosis 1 (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,576,992 - 112,579,104 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1111,981,161 - 111,983,281 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01113,175,082 - 113,177,202 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1113,175,624 - 113,179,353 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,736,370 - 112,738,490 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,368,713 - 112,370,834 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,361,967 - 113,364,087 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi apparatus  (IEA)
Golgi membrane  (IBA,IEA)
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
B3GNT8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,576,992 - 112,579,104 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1111,981,161 - 111,983,281 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01113,175,082 - 113,177,202 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1113,175,624 - 113,179,353 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,736,370 - 112,738,490 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,368,713 - 112,370,834 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,361,967 - 113,364,087 (+)NCBIUU_Cfam_GSD_1.0
B3GNT8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381941,425,359 - 41,428,730 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1941,425,359 - 41,428,730 (-)EnsemblGRCh38hg38GRCh38
GRCh371941,931,264 - 41,934,635 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361946,623,104 - 46,626,475 (-)NCBINCBI36Build 36hg18NCBI36
Build 341946,623,104 - 46,626,475NCBI
Celera1938,731,099 - 38,734,479 (-)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1938,363,040 - 38,366,420 (-)NCBIHuRef
CHM1_11941,930,949 - 41,934,320 (-)NCBICHM1_1
T2T-CHM13v2.01944,246,583 - 44,249,963 (-)NCBIT2T-CHM13v2.0
B3gnt8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39725,327,025 - 25,328,917 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl725,326,079 - 25,334,525 (+)EnsemblGRCm39 Ensembl
GRCm38725,627,600 - 25,629,492 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl725,626,654 - 25,635,100 (+)EnsemblGRCm38mm10GRCm38
MGSCv37726,412,643 - 26,414,509 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36725,336,384 - 25,338,252 (+)NCBIMGSCv36mm8
Celera720,236,645 - 20,238,511 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map713.94NCBI
B3gnt8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8190,263,387 - 90,266,292 (+)NCBIGRCr8
mRatBN7.2181,135,602 - 81,138,501 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl181,135,499 - 81,142,263 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx186,527,798 - 86,530,697 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0195,079,711 - 95,082,610 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0188,283,593 - 88,286,492 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0182,419,264 - 82,422,852 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl182,419,947 - 82,422,846 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,681,429 - 83,684,357 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4180,834,562 - 80,837,461 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1180,912,258 - 80,915,413 (+)NCBI
Celera175,575,956 - 75,578,855 (+)NCBICelera
Cytogenetic Map1q21NCBI
B3gnt8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955555357,726 - 359,695 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955555357,726 - 359,695 (-)NCBIChiLan1.0ChiLan1.0
B3GNT8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22047,636,090 - 47,641,517 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11949,504,977 - 49,508,261 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01938,419,180 - 38,422,360 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11946,925,525 - 46,927,751 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1946,925,762 - 46,926,955 (-)Ensemblpanpan1.1panPan2
B3gnt8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934915,389,477 - 15,391,823 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366613,818,120 - 3,819,307 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366613,817,791 - 3,819,854 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GNT8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl649,399,123 - 49,402,661 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1649,399,121 - 49,403,686 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2645,230,322 - 45,234,561 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B3GNT8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1635,747,599 - 35,751,265 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl635,747,833 - 35,749,026 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607313,983,730 - 13,986,454 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B3gnt8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624907225,888 - 227,081 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624907225,662 - 227,649 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in B3GNT8
29 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCAFT00845004083   ⟹   ENSCAFP00845003268
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1113,175,624 - 113,179,353 (+)Ensembl
RefSeq Acc Id: XM_005616540   ⟹   XP_005616597
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11112,576,992 - 112,579,104 (+)NCBI
Dog10K_Boxer_Tasha1111,981,161 - 111,983,281 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038468062   ⟹   XP_038323990
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11112,736,370 - 112,738,490 (+)NCBI
RefSeq Acc Id: XM_038528799   ⟹   XP_038384727
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01113,361,967 - 113,364,087 (+)NCBI
RefSeq Acc Id: XM_038593072   ⟹   XP_038449000
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01112,368,713 - 112,370,834 (+)NCBI
RefSeq Acc Id: XM_038656889   ⟹   XP_038512817
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01113,175,082 - 113,177,202 (+)NCBI
RefSeq Acc Id: XP_005616597   ⟸   XM_005616540
- UniProtKB: A0A8P0PND9 (UniProtKB/TrEMBL),   A0A8C0KRX2 (UniProtKB/TrEMBL),   A0A8C0QGN9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038323990   ⟸   XM_038468062
RefSeq Acc Id: XP_038449000   ⟸   XM_038593072
RefSeq Acc Id: XP_038512817   ⟸   XM_038656889
- UniProtKB: A0A8I3N1Q9 (UniProtKB/TrEMBL),   A0A8C0KRX2 (UniProtKB/TrEMBL),   A0A8C0QGN9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038384727   ⟸   XM_038528799
- UniProtKB: A0A8C0KRX2 (UniProtKB/TrEMBL),   A0A8C0QGN9 (UniProtKB/TrEMBL),   A0A8P0PND9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845003268   ⟸   ENSCAFT00845004083


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000054129 UniProtKB/TrEMBL
  ENSCAFG00030002919 UniProtKB/TrEMBL
  ENSCAFG00040008346 UniProtKB/TrEMBL
  ENSCAFG00845002318 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000099192.1 UniProtKB/TrEMBL
  ENSCAFT00030005420.1 UniProtKB/TrEMBL
  ENSCAFT00040015585.1 UniProtKB/TrEMBL
  ENSCAFT00845004083 ENTREZGENE
  ENSCAFT00845004083.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.50 UniProtKB/TrEMBL
InterPro Glyco_trans_31 UniProtKB/TrEMBL
NCBI Gene B3GNT8 ENTREZGENE
PANTHER PTHR11214 UniProtKB/TrEMBL
  UDP-GLCNAC:BETAGAL BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 8 UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/TrEMBL
UniProt A0A8C0KRX2 ENTREZGENE
  A0A8C0QGN9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N1Q9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PND9 ENTREZGENE, UniProtKB/TrEMBL