B3GNT8 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8) - Rat Genome Database

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Gene: B3GNT8 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8) Sus scrofa
Analyze
Symbol: B3GNT8
Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8
RGD ID: 14178651
Description: INVOLVED IN protein glycosylation (inferred); FOUND IN integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl649,399,123 - 49,402,661 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1649,399,121 - 49,403,686 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2645,230,322 - 45,234,561 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
B3GNT8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl649,399,123 - 49,402,661 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1649,399,121 - 49,403,686 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2645,230,322 - 45,234,561 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B3GNT8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1941,425,359 - 41,428,730 (-)EnsemblGRCh38hg38GRCh38
GRCh381941,425,359 - 41,428,730 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371941,931,264 - 41,934,635 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361946,623,104 - 46,626,475 (-)NCBINCBI36hg18NCBI36
Build 341946,623,104 - 46,626,475NCBI
Celera1938,731,099 - 38,734,479 (-)NCBI
Cytogenetic Map19q13.2NCBI
HuRef1938,363,040 - 38,366,420 (-)NCBIHuRef
CHM1_11941,930,949 - 41,934,320 (-)NCBICHM1_1
B3gnt8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39725,327,025 - 25,328,917 (+)NCBIGRCm39mm39
GRCm39 Ensembl725,326,079 - 25,334,525 (+)Ensembl
GRCm38725,627,600 - 25,629,492 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl725,626,654 - 25,635,100 (+)EnsemblGRCm38mm10GRCm38
MGSCv37726,412,643 - 26,414,509 (+)NCBIGRCm37mm9NCBIm37
MGSCv36725,336,384 - 25,338,252 (+)NCBImm8
Celera720,236,645 - 20,238,511 (+)NCBICelera
Cytogenetic Map7A3NCBI
B3gnt8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2181,135,602 - 81,138,501 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl181,135,499 - 81,142,263 (+)Ensembl
Rnor_6.0182,419,264 - 82,422,852 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl182,419,947 - 82,422,846 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,681,429 - 83,684,357 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4180,834,562 - 80,837,461 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1180,912,258 - 80,915,413 (+)NCBI
Celera175,575,956 - 75,578,855 (+)NCBICelera
Cytogenetic Map1q21NCBI
B3gnt8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955555357,726 - 359,695 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955555357,726 - 359,695 (-)NCBIChiLan1.0ChiLan1.0
B3GNT8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11946,925,525 - 46,927,751 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1946,925,762 - 46,926,955 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01938,419,180 - 38,422,360 (-)NCBIMhudiblu_PPA_v0panPan3
B3GNT8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,576,992 - 112,579,104 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1111,981,161 - 111,983,281 (+)NCBI
ROS_Cfam_1.01113,175,082 - 113,177,202 (+)NCBI
UMICH_Zoey_3.11112,736,370 - 112,738,490 (+)NCBI
UNSW_CanFamBas_1.01112,368,713 - 112,370,834 (+)NCBI
UU_Cfam_GSD_1.01113,361,967 - 113,364,087 (+)NCBI
B3gnt8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934915,389,477 - 15,391,823 (-)NCBI
SpeTri2.0NW_0049366613,817,791 - 3,819,854 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GNT8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1635,747,599 - 35,751,265 (-)NCBI
ChlSab1.1 Ensembl635,747,833 - 35,749,026 (-)Ensembl
Vero_WHO_p1.0NW_02366607313,983,730 - 13,986,454 (-)NCBI
B3gnt8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624907225,662 - 227,649 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system nervous system renal system
High
Medium
Low 1
Below cutoff 7 1 6 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000048268   ⟹   ENSSSCP00000032513
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl649,399,123 - 49,402,661 (-)Ensembl
RefSeq Acc Id: XM_013988607   ⟹   XP_013844061
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1649,399,121 - 49,403,686 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013844061 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013844061   ⟸   XM_013988607
- UniProtKB: A0A286ZLM1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000032513   ⟸   ENSSSCT00000048268


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000032536 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000032513 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000048268 ENTREZGENE, UniProtKB/TrEMBL
InterPro Glyco_trans_31 UniProtKB/TrEMBL
KEGG Report ssc:100511757 UniProtKB/TrEMBL
NCBI Gene B3GNT8 ENTREZGENE
PANTHER PTHR11214 UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/TrEMBL
UniProt A0A286ZLM1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85727 ENTREZGENE