RPAP2 (RNA polymerase II associated protein 2)

Gene: RPAP2 (RNA polymerase II associated protein 2) Canis lupus familiaris

Analyze

Symbol:

RPAP2

Name:

RNA polymerase II associated protein 2

RGD ID:

12412082

Description:

ENCODES a protein that exhibits hydrolase activity (inferred); metal ion binding (inferred); phosphoprotein phosphatase activity (inferred); INVOLVED IN PERK-mediated unfolded protein response (inferred); regulation of transcription by RNA polymerase II (inferred); snRNA transcription (inferred); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); nucleolus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

putative RNA polymerase II subunit B1 CTD phosphatase RPAP2

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	56,564,310 - 56,644,382 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	59,264,179 - 59,343,537 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	56,941,722 - 57,021,916 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	56,873,999 - 57,021,872 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	56,621,561 - 56,701,635 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	56,600,482 - 56,680,323 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	57,060,629 - 57,140,708 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

PERK-mediated unfolded protein response (IEA)

regulation of transcription by RNA polymerase II (IEA)

snRNA transcription (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

nucleolus (IEA)

nucleus (IEA)

transcription preinitiation complex (IEA)

Molecular Function

hydrolase activity (IEA)

metal ion binding (IEA)

phosphoprotein phosphatase activity (IEA)

protein binding (ISO)

protein serine/threonine phosphatase activity (IEA)

RNA polymerase core enzyme binding (IEA)

RNA polymerase II CTD heptapeptide repeat phosphatase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase II transcription pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

RPAP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	56,564,310 - 56,644,382 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	59,264,179 - 59,343,537 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	56,941,722 - 57,021,916 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	56,873,999 - 57,021,872 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	56,621,561 - 56,701,635 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	56,600,482 - 56,680,323 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	57,060,629 - 57,140,708 (-)	NCBI		UU_Cfam_GSD_1.0

RPAP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	92,299,059 - 92,402,056 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	92,299,059 - 92,402,056 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	92,764,616 - 92,867,613 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	92,537,193 - 92,626,317 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	91,010,952 - 91,106,077 (+)	NCBI		Celera
Cytogenetic Map	1	p22.1	NCBI
HuRef	1	90,884,969 - 90,974,879 (+)	NCBI		HuRef
CHM1_1	1	92,879,299 - 92,968,461 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	92,143,968 - 92,246,943 (+)	NCBI		T2T-CHM13v2.0

Rpap2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	107,745,239 - 107,809,719 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	107,745,239 - 107,809,704 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	107,597,373 - 107,661,853 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	107,597,373 - 107,661,838 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	108,026,399 - 108,090,857 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	107,838,037 - 107,902,138 (+)	NCBI		MGSCv36	mm8
Celera	5	104,709,740 - 104,774,242 (+)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	52.23	NCBI

Rpap2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	2,253,966 - 2,332,251 (-)	NCBI		GRCr8
mRatBN7.2	14	2,109,044 - 2,187,343 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	2,109,053 - 2,187,350 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	1,987,484 - 2,065,871 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	3,289,301 - 3,367,686 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	1,985,869 - 2,064,466 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	3,125,595 - 3,204,590 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	3,124,622 - 3,204,588 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	3,126,061 - 3,205,485 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	2,664,860 - 2,744,461 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	2,664,860 - 2,744,461 (-)	NCBI
Celera	14	2,127,947 - 2,207,709 (-)	NCBI		Celera
Cytogenetic Map	14	p22	NCBI

Rpap2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955423	2,101,780 - 2,195,390 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955423	2,062,163 - 2,195,351 (-)	NCBI	ChiLan1.0	ChiLan1.0

RPAP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	134,634,757 - 134,722,997 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	133,774,458 - 133,877,685 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	94,962,964 - 95,102,307 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	93,701,765 - 93,790,323 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	93,701,765 - 93,790,323 (+)	Ensembl	panpan1.1		panPan2

Rpap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	102,169,688 - 102,255,994 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936537	6,692,000 - 6,778,275 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPAP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	124,690,317 - 124,773,887 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	124,691,655 - 124,773,914 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	136,360,271 - 136,442,510 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RPAP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	40,863,401 - 40,950,981 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	40,863,719 - 40,950,879 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	77,056,891 - 77,145,495 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rpap2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624742	5,338,997 - 5,434,936 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RPAP2
799 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium									4
Low	5	5	22	6	6	6	6	6	8	8	10	6
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003639097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005621926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014114838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022420475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022420476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022420477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022420478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022420479	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038480048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038480049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038480050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038480051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038480052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038480053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038541362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038541363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038541365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038541366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038541367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038541368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605498	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605501	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038670128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038670129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038670130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038670131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038670132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038670133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00845027614 ⟹ ENSCAFP00845021728

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	56,873,999 - 57,021,872 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845027646 ⟹ ENSCAFP00845021757

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	56,889,587 - 57,021,872 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845027681 ⟹ ENSCAFP00845021784

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	56,941,030 - 57,021,872 (-)	Ensembl

RefSeq Acc Id:

XM_003639097 ⟹ XP_003639145

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	56,565,056 - 56,644,382 (-)	NCBI
Dog10K_Boxer_Tasha	6	59,264,179 - 59,343,536 (-)	NCBI

Sequence:

show sequence

GCCCCGCGCTAGCGACGGGGGGCGGAGCCTCGGGGGGAGACGCCGGGTCCCGGGCTGACCTTCT
GACGCGTTTCCCATGGCTGACTCCGGCGGGCCGCGCTCGCCCGGCCTCAAGGCTCGGACGCCCC
GCGCTTCCCGAAACGCCTCAGGTGCTAAACAGACAAATGCCTTAAAACAAGAAGATGCTTCTAA
AAGGAAAGCAGAACTAGAAGCAGCTGTGAGAAAGAAGATTGAATTTGAGAGAAAAGCTCTTCAT
ATTGTTGAACAGCTTTTAGAAGAGGATATTACAGAAGAATTCCTAAGGGAATGTGGGAAGTTCA
TCACACCTGCTCACTACAGCGATGTCGTGGATGAGCGTTCTATTATCAAACTCTGCGGTTATCC
TTTATGTCAGAAGAAACTAGGAATTGTACCAAAACAGAAATATAAAATTTCTACCAAAACCAAT
AAAGTCTATGATATTACTGAAAGAAAGTGCTTTTGCAGCAACTTTTGTTACAAAGCATCTAAGT
TTTTTGAAGCACAAATTCCTAAAACTCCAGTATGGGTTCGAGAAGAGGAAAGGCATCCTGATTT
TCAGTTACTACAGGAAGGACAAAGTGGCCATTCTGGAAAGGAAGTACAGCTATGCACTAAGGCC
ATTAAAACATCAGATATTGACAATCCTGGCCATTTTGAGAAGCATTATGAATCTGGTTCTTCCA
GCTCTCATAGTGATAATAACAGTGATAATGAACAAGACTTTGTTTCCTCCATTCTACCAGGAAA
CAGACCAACTGCAACGGGTATAAGTCCACAGCTGCACAAAAAAAGCATAATGAAAAAGAAAGCT
GGTCAGAAAGCTAACTCCAAACATGAAGACAAAGAAGAGACGGTAATAGATGTCACTGAGCAGC
TAGGCAAGTGCAGATTAGATAGTCATGGGAAGGCTGCTGCTTGTGAACTTCCTTTACAGAAAGT
AAGTCCTCAGATTTCTTCAAATAGTCCTTTGCAAGAAAAATTAGAAGCTACAGAAAATTCTGAA
AATAAATACAGTAGTTCAAAAATAACTCTAGTAGGCATAAGTAAGAAAAGTGCTGAGCATTTTA
AGAGAAAATTTGCCAAATCAAAGCAAGATTCTAGGCCAGCCTCTAGTTCAGTGCAGATGTGTCC
TGAAGTTGCAAAGGCAAACTTACTTAAAGTCCTGAAGGAGACTTTGATTGAGTGGAAGACAGAA
GAAACTTTGAGGTTTTTGTATGGCCAGAATTATGCTGCTTTGTGTCTGAAACTTTCTTCAGCCC
CTCTGGTTAAAGAAGAAGAACTTGATGAAGATGACATACACTCTGACCTAGATAGGCATTTCCC
TGCCTTTCAGGAATCTCAGAACAGCTTGGATGAGTCTTTACCTTTTAGGGCCTCAGATACAGCC
ATTAAACCACTGCCAAGTTATGAGAACTTGAAAAAAGAAACTGAAACATTAAATCTGAGGATAA
GGGAGTTTTATAGAGGACGATATGTTTTGAGTGAAGAAACCATCAAATCACAAGACTCAGAAGA
GCATGATCCCACCTTTCCACTGATAGATTCAAGTTCTCAGAACCAGATTAGAAAACGCATCGTA
CTGGAAAAGTTGAGTAAAGTAGTGCCTGGACTTTTGGGGCCTCTTCAAATCACATTAGGAGATA
TTTATACACAACTTAAAAATCTCGTCCGAACTTTCAGATTAACAAATAGAAATATTATACACAA
ACCTGTGGAGTGGACCTTAATTGCTATGGTGTTGCTGTCATTACTGACCCCAATTCTTGGCATT
CAGAAGCATTCTCGGGAAAATGTGGTGTTTACACAGTTTATAGAGACTTTGCTTGAAGAATTAC
ACTTAAAGAATGAAGACCTTGAAAGCTTAACTGTCATATTTAAAACCAGCTGTTAACCGGAGTG
GTATAATCCATGAAGACCAAATAGAAGGTAGACTTCTATTCATCATTTCTGGAATTCTACCTAC
AATAATGTTCCAGTGGTGACTGTTAACTAGCTTTGTTCCAAGAAAGACCTTTACCTCCTTAGAT
TTCAGCCCCCTGCTTCCCAGTCCCTAACTGTACAGTGACTTCCCCTTGATTGAGGAGAACCATT
ATTCCAACCAGGATAACCAAGTCCCTGTATTCCCTAGCATTAAGACATAGTATTTTTATTTACT
TGAAAATGAAAATTGAAGTCTTAAGTTGAAACTTTAATTTTAATGACCTCATTTTTTTCTGGAT
GATTGCAACCATCATATCAGTTGACAGAAACATTTAAGAACATTCCTATTTTGGCCTTGTACTC
TAAACTCTAGATTCTAAGCAGCCAGAAAGAGGTCAACAAATACAACCTAAAATGAAGCCCTTTG
GAAGTCTAGTCATTATTCTTTTAAAGAAACTGTTATAAAATGGTCCTGAGCAATGTAGTTTATT
GTAGAAGTCCAAAACAGGAGTATCCCAGAATTTTCTGGACTCAAAGAAATAAACTATAGTTTGT
TTTCAAAA

hide sequence

RefSeq Acc Id:

XM_005621926 ⟹ XP_005621983

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	56,565,056 - 56,644,382 (-)	NCBI
Dog10K_Boxer_Tasha	6	59,264,179 - 59,343,536 (-)	NCBI

Sequence:

show sequence

GCCCCGCGCTAGCGACGGGGGGCGGAGCCTCGGGGGGAGACGCCGGGTCCCGGGCTGACCTTCT
GACGCGTTTCCCATGGCTGACTCCGGCGGGCCGCGCTCGCCCGGCCTCAAGGCTCGGACGCCCC
GCGCTTCCCGAAACGCCTCAGGTGCTAAACAGACAAATGCCTTAAAACAAGAAGATGCTTCTAA
AAGGAAAGCAGAACTAGAAGCAGCTGTGAGAAAGAAGATTGAATTTGAGAGAAAAGCTCTTCAT
ATTGTTGAACAGCTTTTAGAAGAGGATATTACAGAAGAATTCCTAAGGGAATGTGGGAAGTTCA
TCACACCTGCTCACTACAGCGATGTCGTGGATGAGCGTTCTATTATCAAACTCTGCGGTTATCC
TTTATGTCAGAAGAAACTAGGAATTGTACCAAAACAGAAATATAAAATTTCTACCAAAACCAAT
AAAGTCTATGATATTACTGAAAGAAAGTGCTTTTGCAGCAACTTTTGTTACAAAGCATCTAAGT
TTTTTGAAGCACAAATTCCTAAAACTCCAGTATGGGTTCGAGAAGAGGAAAGTGGCCATTCTGG
AAAGGAAGTACAGCTATGCACTAAGGCCATTAAAACATCAGATATTGACAATCCTGGCCATTTT
GAGAAGCATTATGAATCTGGTTCTTCCAGCTCTCATAGTGATAATAACAGTGATAATGAACAAG
ACTTTGTTTCCTCCATTCTACCAGGAAACAGACCAACTGCAACGGGTATAAGTCCACAGCTGCA
CAAAAAAAGCATAATGAAAAAGAAAGCTGGTCAGAAAGCTAACTCCAAACATGAAGACAAAGAA
GAGACGGTAATAGATGTCACTGAGCAGCTAGGCAAGTGCAGATTAGATAGTCATGGGAAGGCTG
CTGCTTGTGAACTTCCTTTACAGAAAGTAAGTCCTCAGATTTCTTCAAATAGTCCTTTGCAAGA
AAAATTAGAAGCTACAGAAAATTCTGAAAATAAATACAGTAGTTCAAAAATAACTCTAGTAGGC
ATAAGTAAGAAAAGTGCTGAGCATTTTAAGAGAAAATTTGCCAAATCAAAGCAAGATTCTAGGC
CAGCCTCTAGTTCAGTGCAGATGTGTCCTGAAGTTGCAAAGGCAAACTTACTTAAAGTCCTGAA
GGAGACTTTGATTGAGTGGAAGACAGAAGAAACTTTGAGGTTTTTGTATGGCCAGAATTATGCT
GCTTTGTGTCTGAAACTTTCTTCAGCCCCTCTGGTTAAAGAAGAAGAACTTGATGAAGATGACA
TACACTCTGACCTAGATAGGCATTTCCCTGCCTTTCAGGAATCTCAGAACAGCTTGGATGAGTC
TTTACCTTTTAGGGCCTCAGATACAGCCATTAAACCACTGCCAAGTTATGAGAACTTGAAAAAA
GAAACTGAAACATTAAATCTGAGGATAAGGGAGTTTTATAGAGGACGATATGTTTTGAGTGAAG
AAACCATCAAATCACAAGACTCAGAAGAGCATGATCCCACCTTTCCACTGATAGATTCAAGTTC
TCAGAACCAGATTAGAAAACGCATCGTACTGGAAAAGTTGAGTAAAGTAGTGCCTGGACTTTTG
GGGCCTCTTCAAATCACATTAGGAGATATTTATACACAACTTAAAAATCTCGTCCGAACTTTCA
GATTAACAAATAGAAATATTATACACAAACCTGTGGAGTGGACCTTAATTGCTATGGTGTTGCT
GTCATTACTGACCCCAATTCTTGGCATTCAGAAGCATTCTCGGGAAAATGTGGTGTTTACACAG
TTTATAGAGACTTTGCTTGAAGAATTACACTTAAAGAATGAAGACCTTGAAAGCTTAACTGTCA
TATTTAAAACCAGCTGTTAACCGGAGTGGTATAATCCATGAAGACCAAATAGAAGGTAGACTTC
TATTCATCATTTCTGGAATTCTACCTACAATAATGTTCCAGTGGTGACTGTTAACTAGCTTTGT
TCCAAGAAAGACCTTTACCTCCTTAGATTTCAGCCCCCTGCTTCCCAGTCCCTAACTGTACAGT
GACTTCCCCTTGATTGAGGAGAACCATTATTCCAACCAGGATAACCAAGTCCCTGTATTCCCTA
GCATTAAGACATAGTATTTTTATTTACTTGAAAATGAAAATTGAAGTCTTAAGTTGAAACTTTA
ATTTTAATGACCTCATTTTTTTCTGGATGATTGCAACCATCATATCAGTTGACAGAAACATTTA
AGAACATTCCTATTTTGGCCTTGTACTCTAAACTCTAGATTCTAAGCAGCCAGAAAGAGGTCAA
CAAATACAACCTAAAATGAAGCCCTTTGGAAGTCTAGTCATTATTCTTTTAAAGAAACTGTTAT
AAAATGGTCCTGAGCAATGTAGTTTATTGTAGAAGTCCAAAACAGGAGTATCCCAGAATTTTCT
GGACTCAAAGAAATAAACTATAGTTTGTTTTCAAAA

hide sequence

RefSeq Acc Id:

XM_022420475 ⟹ XP_022276183

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	56,565,056 - 56,644,382 (-)	NCBI
Dog10K_Boxer_Tasha	6	59,264,179 - 59,343,537 (-)	NCBI

Sequence:

show sequence

GCCCCGCGCTAGCGACGGGGGGCGGAGCCTCGGGGGGAGACGCCGGGTCCCGGGCTGACCTTCT
GACGCGTTTCCCATGGCTGACTCCGGCGGGCCGCGCTCGCCCGGCCTCAAGGCTCGGACGCCCC
GCGCTTCCCGAAACGCCTCAGGTGCTAAACAGACAAATGCCTTAAAACAAGAAGATGCTTCTAA
AAGGAAAGCAGAACTAGAAGCAGCTGTGAGAAAGAAGATTGAATTTGAGAGAAAAGCTCTTCAT
ATTGTTGAACAGCTTTTAGAAGAGGATATTACAGAAGAATTCCTAAGGGAATGTGGGAAGTTCA
TCACACCTGCTCACTACAGCGATGTCGTGGATGAGCGTTCTATTATCAAACTCTGCGGTTATCC
TTTATGTCAGAAGAAACTAGGAATTGTACCAAAACAGAAATATAAAATTTCTACCAAAACCAAT
AAAGTCTATGATATTACTGAAAGAAAGTGCTTTTGCAGCAACTTTTGTTACAAAGCATCTAAGT
TTTTTGAAGCACAAATTCCTAAAACTCCAGTATGGGTTCGAGAAGAGGAAAGGCATCCTGATTT
TCAGTTACTACAGGAAGGACAAAGTGGCCATTCTGGAAAGGAAGTACAGCTATGCACTAAGGCC
ATTAAAACATCAGATATTGACAATCCTGGCCATTTTGAGAAGCATTATGAATCTGGTTCTTCCA
GCTCTCATAGTGATAATAACAGTGATAATGAACAAGACTTTGTTTCCTCCATTCTACCAGGAAA
CAGACCAACTGCAACGGGTATAAGTCCACAGCTGCACAAAAAAAGCATAATGAAAAAGAAAGCT
GGTCAGAAAGCTAACTCCAAACATGAAGACAAAGAAGAGACGGTAATAGATGTCACTGAGCAGC
TAGGCAAGTGCAGATTAGATAGTCATGGGAAGGCTGCTGCTTGTGAACTTCCTTTACAGAAAGT
AAGTCCTCAGATTTCTTCAAATAGTCCTTTGCAAGAAAAATTAGAAGCTACAGAAAATTCTGAA
AATAAATACAGTAGTTCAAAAATAACTCTAGTAGGCATAAGTAAGAAAAGTGCTGAGCATTTTA
AGAGAAAATTTGCCAAATCAAAGCAAGATTCTAGGCCAGCCTCTAGTTCAGTGCAGATGTGTCC
TGAAGTTGCAAAGGCAAACTTACTTAAAGTCCTGAAGGAGACTTTGATTGAGTGGAAGACAGAA
GAAACTTTGAGGTTTTTGTATGGCCAGAATTATGCTGCTTTGTGTCTGAAACTTTCTTCAGCCC
CTCTGGTTAAAGAAGAAGAACTTGATGAAGATGACATACACTCTGACCTAGATAGGCATTTCCC
TGCCTTTCAGGAATCTCAGAACAGCTTGGATGAGTCTTTACCTTTTAGGGCCTCAGATACAGCC
ATTAAACCACTGCCAAGTTATGAGAACTTGAAAAAAGAAACTGAAACATTAAATCTGAGGATAA
GGGAGTTTTATAGAGGACGATATGTTTTGAGTGAAGAAACCATCAAATCACAAGACTCAGAAGA
GCATGATCCCACCTTTCCACTGATAGATTCAAGTTCTCAGAACCAGATTAGAAAACGCATCGTA
CTGGAAAAGTTGAGTAAAGTAGTGCCTGGACTTTTGGGGCCTCTTCAAATCACATTAGGAGATA
TTTATACACAACTTAAAAATCTCGTCCGAACTTTCAGATTAACAAATAGAAATATTATACACAA
ACCTGTGGAGTGGACCTTAATTGCTATGGTGTTGCTGTCATTCCGTCACAGTATGATGTTGTTC
CTCATATGGACGTTTTTAATTACAACTGACCCCAATTCTTGGCATTCAGAAGCATTCTCGGGAA
AATGTGGTGTTTACACAGTTTATAGAGACTTTGCTTGAAGAATTACACTTAAAGAATGAAGACC
TTGAAAGCTTAACTGTCATATTTAAAACCAGCTGTTAACCGGAGTGGTATAATCCATGAAGACC
AAATAGAAGGTAGACTTCTATTCATCATTTCTGGAATTCTACCTACAATAATGTTCCAGTGGTG
ACTGTTAACTAGCTTTGTTCCAAGAAAGACCTTTACCTCCTTAGATTTCAGCCCCCTGCTTCCC
AGTCCCTAACTGTACAGTGACTTCCCCTTGATTGAGGAGAACCATTATTCCAACCAGGATAACC
AAGTCCCTGTATTCCCTAGCATTAAGACATAGTATTTTTATTTACTTGAAAATGAAAATTGAAG
TCTTAAGTTGAAACTTTAATTTTAATGACCTCATTTTTTTCTGGATGATTGCAACCATCATATC
AGTTGACAGAAACATTTAAGAACATTCCTATTTTGGCCTTGTACTCTAAACTCTAGATTCTAAG
CAGCCAGAAAGAGGTCAACAAATACAACCTAAAATGAAGCCCTTTGGAAGTCTAGTCATTATTC
TTTTAAAGAAACTGTTATAAAATGGTCCTGAGCAATGTAGTTTATTGTAGAAGTCCAAAACAGG
AGTATCCCAGAATTTTCTGGACTCAAAGAAATAAACTATAGTTTGTTTTCAAAA

hide sequence

RefSeq Acc Id:

XM_022420478 ⟹ XP_022276186

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	56,600,108 - 56,644,382 (-)	NCBI
Dog10K_Boxer_Tasha	6	59,299,272 - 59,343,537 (-)	NCBI

Sequence:

show sequence

GCCCCGCGCTAGCGACGGGGGGCGGAGCCTCGGGGGGAGACGCCGGGTCCCGGGCTGACCTTCT
GACGCGTTTCCCATGGCTGACTCCGGCGGGCCGCGCTCGCCCGGCCTCAAGGCTCGGACGCCCC
GCGCTTCCCGAAACGCCTCAGGTGCTAAACAGACAAATGCCTTAAAACAAGAAGATGCTTCTAA
AAGGAAAGCAGAACTAGAAGCAGCTGTGAGAAAGAAGATTGAATTTGAGAGAAAAGCTCTTCAT
ATTGTTGAACAGCTTTTAGAAGAGGATATTACAGAAGAATTCCTAAGGGAATGTGGGAAGTTCA
TCACACCTGCTCACTACAGCGATGTCGTGGATGAGCGTTCTATTATCAAACTCTGCGGTTATCC
TTTATGTCAGAAGAAACTAGGAATTGTACCAAAACAGAAATATAAAATTTCTACCAAAACCAAT
AAAGTCTATGATATTACTGAAAGAAAGTGCTTTTGCAGCAACTTTTGTTACAAAGCATCTAAGT
TTTTTGAAGCACAAATTCCTAAAACTCCAGTATGGGTTCGAGAAGAGGAAAGGCATCCTGATTT
TCAGTTACTACAGGAAGGACAAAGTGGCCATTCTGGAAAGGAAGTACAGCTATGCACTAAGGCC
ATTAAAACATCAGATATTGACAATCCTGGCCATTTTGAGAAGCATTATGAATCTGGTTCTTCCA
GCTCTCATAGTGATAATAACAGTGATAATGAACAAGACTTTGTTTCCTCCATTCTACCAGGAAA
CAGACCAACTGCAACGGGTATAAGTCCACAGCTGCACAAAAAAAGCATAATGAAAAAGAAAGCT
GGTCAGAAAGCTAACTCCAAACATGAAGACAAAGAAGAGACGGTAATAGATGTCACTGAGCAGC
TAGGCAAGTGCAGATTAGATAGTCATGGGAAGGCTGCTGCTTGTGAACTTCCTTTACAGAAAGT
AAGTCCTCAGATTTCTTCAAATAGTCCTTTGCAAGAAAAATTAGAAGCTACAGAAAATTCTGAA
AATAAATACAGTAGTTCAAAAATAACTCTAGTAGGCATAAGTAAGAAAAGTGCTGAGCATTTTA
AGAGAAAATTTGCCAAATCAAAGCAAGATTCTAGGCCAGCCTCTAGTTCAGTGCAGATGTGTCC
TGAAGTTGCAAAGGCAAACTTACTTAAAGTCCTGAAGGAGACTTTGATTGAGTGGAAGACAGAA
GAAACTTTGAGGTTTTTGTATGGCCAGAATTATGCTGCTTTGTGTCTGAAACTTTCTTCAGCCC
CTCTGGTTAAAGAAGAAGAACTTGATGAAGATGACATACACTCTGACCTAGATAGGCATTTCCC
TGCCTTTCAGGAATCTCAGAACAGCTTGGATGAGTCTTTACCTTTTAGGGCCTCAGATACAGCC
ATTAAACCACTGCCAAGTTATGAGAACTTGAAAAAAGAAACTGAAACATTAAATCTGAGGATAA
GGGAGTTTTATAGAGGACGATATGTTTTGAGTGAAGAAACCATCAAATCACAAGACTCAGAAGA
GCATGATCCCACCTTTCCACTGATAGATTCAAGTTCTCAGAACCAGATTAGAAAACGCATCGTA
CTGGAAAAGTTGAGTAAAGTAGTGCCTGGACTTTTGGGGCCTCTTCAAATCACATTAGGAGATA
TTTATACACAACTTAAAAATCTCGTCCGAACTTTCAGGTTTTCACAGGCGTGATTGATTCCTGC
AGCATTTTGTTTTTCTGACTGACAAAAGCACAGAAGGACATTTTTACTTCATCTAGAATGTTTA
GATTTGAAAGTGAATATTCAGATTAACAAATAGAAATATTATACACAAACCTGTGGAGTGGACC
TTAATTG

hide sequence

RefSeq Acc Id:

XM_022420479 ⟹ XP_022276187

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	56,565,056 - 56,644,330 (-)	NCBI
Dog10K_Boxer_Tasha	6	59,264,179 - 59,343,482 (-)	NCBI

Sequence:

show sequence

GGCTGACCTTCTGACGCGTTTCCCATGGCTGACTCCGGCGGGCCGCGCTCGCCCGGCCTCAAGG
CTCGGACGCCCCGCGCTTCCCGAAACGCCTCAGGTGCTAAACAGACAAATGCCTTAAAACAAGA
AGATGCTTCTAAAAGGGGAAGTTCATCACACCTGCTCACTACAGCGATGTCGTGGATGAGCGTT
CTATTATCAAACTCTGCGGTTATCCTTTATGTCAGAAGAAACTAGGAATTGTACCAAAACAGAA
ATATAAAATTTCTACCAAAACCAATAAAGTCTATGATATTACTGAAAGAAAGTGCTTTTGCAGC
AACTTTTGTTACAAAGCATCTAAGTTTTTTGAAGCACAAATTCCTAAAACTCCAGTATGGGTTC
GAGAAGAGGAAAGTGATACTCAGATCTCAGCGTAGGACCAAATGCCAGACAGCTGCAAGGCATC
CTGATTTTCAGTTACTACAGGAAGGACAAAGTGGCCATTCTGGAAAGGAAGTACAGCTATGCAC
TAAGGCCATTAAAACATCAGATATTGACAATCCTGGCCATTTTGAGAAGCATTATGAATCTGGT
TCTTCCAGCTCTCATAGTGATAATAACAGTGATAATGAACAAGACTTTGTTTCCTCCATTCTAC
CAGGAAACAGACCAACTGCAACGGGTATAAGTCCACAGCTGCACAAAAAAAGCATAATGAAAAA
GAAAGCTGGTCAGAAAGCTAACTCCAAACATGAAGACAAAGAAGAGACGGTAATAGATGTCACT
GAGCAGCTAGGCAAGTGCAGATTAGATAGTCATGGGAAGGCTGCTGCTTGTGAACTTCCTTTAC
AGAAAGTAAGTCCTCAGATTTCTTCAAATAGTCCTTTGCAAGAAAAATTAGAAGCTACAGAAAA
TTCTGAAAATAAATACAGTAGTTCAAAAATAACTCTAGTAGGCATAAGTAAGAAAAGTGCTGAG
CATTTTAAGAGAAAATTTGCCAAATCAAAGCAAGATTCTAGGCCAGCCTCTAGTTCAGTGCAGA
TGTGTCCTGAAGTTGCAAAGGCAAACTTACTTAAAGTCCTGAAGGAGACTTTGATTGAGTGGAA
GACAGAAGAAACTTTGAGGTTTTTGTATGGCCAGAATTATGCTGCTTTGTGTCTGAAACTTTCT
TCAGCCCCTCTGGTTAAAGAAGAAGAACTTGATGAAGATGACATACACTCTGACCTAGATAGGC
ATTTCCCTGCCTTTCAGGAATCTCAGAACAGCTTGGATGAGTCTTTACCTTTTAGGGCCTCAGA
TACAGCCATTAAACCACTGCCAAGTTATGAGAACTTGAAAAAAGAAACTGAAACATTAAATCTG
AGGATAAGGGAGTTTTATAGAGGACGATATGTTTTGAGTGAAGAAACCATCAAATCACAAGACT
CAGAAGAGCATGATCCCACCTTTCCACTGATAGATTCAAGTTCTCAGAACCAGATTAGAAAACG
CATCGTACTGGAAAAGTTGAGTAAAGTAGTGCCTGGACTTTTGGGGCCTCTTCAAATCACATTA
GGAGATATTTATACACAACTTAAAAATCTCGTCCGAACTTTCAGATTAACAAATAGAAATATTA
TACACAAACCTGTGGAGTGGACCTTAATTGCTATGGTGTTGCTGTCATTACTGACCCCAATTCT
TGGCATTCAGAAGCATTCTCGGGAAAATGTGGTGTTTACACAGTTTATAGAGACTTTGCTTGAA
GAATTACACTTAAAGAATGAAGACCTTGAAAGCTTAACTGTCATATTTAAAACCAGCTGTTAAC
CGGAGTGGTATAATCCATGAAGACCAAATAGAAGGTAGACTTCTATTCATCATTTCTGGAATTC
TACCTACAATAATGTTCCAGTGGTGACTGTTAACTAGCTTTGTTCCAAGAAAGACCTTTACCTC
CTTAGATTTCAGCCCCCTGCTTCCCAGTCCCTAACTGTACAGTGACTTCCCCTTGATTGAGGAG
AACCATTATTCCAACCAGGATAACCAAGTCCCTGTATTCCCTAGCATTAAGACATAGTATTTTT
ATTTACTTGAAAATGAAAATTGAAGTCTTAAGTTGAAACTTTAATTTTAATGACCTCATTTTTT
TCTGGATGATTGCAACCATCATATCAGTTGACAGAAACATTTAAGAACATTCCTATTTTGGCCT
TGTACTCTAAACTCTAGATTCTAAGCAGCCAGAAAGAGGTCAACAAATACAACCTAAAATGAAG
CCCTTTGGAAGTCTAGTCATTATTCTTTTAAAGAAACTGTTATAAAATGGTCCTGAGCAATGTA
GTTTATTGTAGAAGTCCAAAACAGGAGTATCCCAGAATTTTCTGGACTCAAAGAAATAAACTAT
AGTTTGTTTTCAAAA

hide sequence

RefSeq Acc Id:

XM_038480048 ⟹ XP_038335976

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	56,621,561 - 56,701,634 (-)	NCBI

RefSeq Acc Id:

XM_038480049 ⟹ XP_038335977

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	56,621,561 - 56,701,635 (-)	NCBI

RefSeq Acc Id:

XM_038480050 ⟹ XP_038335978

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	56,621,561 - 56,701,634 (-)	NCBI

RefSeq Acc Id:

XM_038480051 ⟹ XP_038335979

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	56,656,917 - 56,701,635 (-)	NCBI

RefSeq Acc Id:

XM_038480052 ⟹ XP_038335980

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	56,621,561 - 56,701,556 (-)	NCBI

RefSeq Acc Id:

XM_038480053 ⟹ XP_038335981

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	56,621,561 - 56,701,582 (-)	NCBI

RefSeq Acc Id:

XM_038541362 ⟹ XP_038397290

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	57,060,629 - 57,140,707 (-)	NCBI

RefSeq Acc Id:

XM_038541363 ⟹ XP_038397291

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	57,060,629 - 57,140,708 (-)	NCBI

RefSeq Acc Id:

XM_038541365 ⟹ XP_038397293

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	57,060,629 - 57,140,707 (-)	NCBI

RefSeq Acc Id:

XM_038541366 ⟹ XP_038397294

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	57,095,992 - 57,140,708 (-)	NCBI

RefSeq Acc Id:

XM_038541367 ⟹ XP_038397295

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	57,060,629 - 57,140,629 (-)	NCBI

RefSeq Acc Id:

XM_038541368 ⟹ XP_038397296

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	57,060,629 - 57,140,655 (-)	NCBI

RefSeq Acc Id:

XM_038605496 ⟹ XP_038461424

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	56,600,482 - 56,680,322 (-)	NCBI

RefSeq Acc Id:

XM_038605497 ⟹ XP_038461425

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	56,600,482 - 56,680,323 (-)	NCBI

RefSeq Acc Id:

XM_038605498 ⟹ XP_038461426

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	56,600,482 - 56,680,323 (-)	NCBI

RefSeq Acc Id:

XM_038605499 ⟹ XP_038461427

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	56,635,579 - 56,680,323 (-)	NCBI

RefSeq Acc Id:

XM_038605500 ⟹ XP_038461428

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	56,600,482 - 56,680,243 (-)	NCBI

RefSeq Acc Id:

XM_038605501 ⟹ XP_038461429

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	56,600,482 - 56,680,269 (-)	NCBI

RefSeq Acc Id:

XM_038670128 ⟹ XP_038526056

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	56,941,722 - 57,021,915 (-)	NCBI

RefSeq Acc Id:

XM_038670129 ⟹ XP_038526057

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	56,941,722 - 57,021,916 (-)	NCBI

RefSeq Acc Id:

XM_038670130 ⟹ XP_038526058

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	56,941,722 - 57,021,915 (-)	NCBI

RefSeq Acc Id:

XM_038670131 ⟹ XP_038526059

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	56,977,088 - 57,021,916 (-)	NCBI

RefSeq Acc Id:

XM_038670132 ⟹ XP_038526060

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	56,941,722 - 57,021,837 (-)	NCBI

RefSeq Acc Id:

XM_038670133 ⟹ XP_038526061

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	56,941,722 - 57,021,863 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003639145	(Get FASTA)	NCBI Sequence Viewer
	XP_005621983	(Get FASTA)	NCBI Sequence Viewer
	XP_022276183	(Get FASTA)	NCBI Sequence Viewer
	XP_022276186	(Get FASTA)	NCBI Sequence Viewer
	XP_022276187	(Get FASTA)	NCBI Sequence Viewer
	XP_038335976	(Get FASTA)	NCBI Sequence Viewer
	XP_038335977	(Get FASTA)	NCBI Sequence Viewer
	XP_038335978	(Get FASTA)	NCBI Sequence Viewer
	XP_038335979	(Get FASTA)	NCBI Sequence Viewer
	XP_038335980	(Get FASTA)	NCBI Sequence Viewer
	XP_038335981	(Get FASTA)	NCBI Sequence Viewer
	XP_038397290	(Get FASTA)	NCBI Sequence Viewer
	XP_038397291	(Get FASTA)	NCBI Sequence Viewer
	XP_038397293	(Get FASTA)	NCBI Sequence Viewer
	XP_038397294	(Get FASTA)	NCBI Sequence Viewer
	XP_038397295	(Get FASTA)	NCBI Sequence Viewer
	XP_038397296	(Get FASTA)	NCBI Sequence Viewer
	XP_038461424	(Get FASTA)	NCBI Sequence Viewer
	XP_038461425	(Get FASTA)	NCBI Sequence Viewer
	XP_038461426	(Get FASTA)	NCBI Sequence Viewer
	XP_038461427	(Get FASTA)	NCBI Sequence Viewer
	XP_038461428	(Get FASTA)	NCBI Sequence Viewer
	XP_038461429	(Get FASTA)	NCBI Sequence Viewer
	XP_038526056	(Get FASTA)	NCBI Sequence Viewer
	XP_038526057	(Get FASTA)	NCBI Sequence Viewer
	XP_038526058	(Get FASTA)	NCBI Sequence Viewer
	XP_038526059	(Get FASTA)	NCBI Sequence Viewer
	XP_038526060	(Get FASTA)	NCBI Sequence Viewer
	XP_038526061	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000029888.5
	ENSCAFP00030008222.1
	ENSCAFP00030014635.1
	ENSCAFP00040008865.1
	ENSCAFP00040008940.1
	ENSCAFP00040008978.1
	ENSCAFP00040009035.1
	ENSCAFP00040009080.1
	ENSCAFP00845021728
	ENSCAFP00845021728.1
	ENSCAFP00845021757.1
	ENSCAFP00845021784
	ENSCAFP00845021784.1

RefSeq Acc Id:	XP_005621983 ⟸ XM_005621926
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0MNY7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADSGGPRSPGLKARTPRASRNASGAKQTNALKQEDASKRKAELEAAVRKKIEFERKALHIVEQ LLEEDITEEFLRECGKFITPAHYSDVVDERSIIKLCGYPLCQKKLGIVPKQKYKISTKTNKVYD ITERKCFCSNFCYKASKFFEAQIPKTPVWVREEESGHSGKEVQLCTKAIKTSDIDNPGHFEKHY ESGSSSSHSDNNSDNEQDFVSSILPGNRPTATGISPQLHKKSIMKKKAGQKANSKHEDKEETVI DVTEQLGKCRLDSHGKAAACELPLQKVSPQISSNSPLQEKLEATENSENKYSSSKITLVGISKK SAEHFKRKFAKSKQDSRPASSSVQMCPEVAKANLLKVLKETLIEWKTEETLRFLYGQNYAALCL KLSSAPLVKEEELDEDDIHSDLDRHFPAFQESQNSLDESLPFRASDTAIKPLPSYENLKKETET LNLRIREFYRGRYVLSEETIKSQDSEEHDPTFPLIDSSSQNQIRKRIVLEKLSKVVPGLLGPLQ ITLGDIYTQLKNLVRTFRLTNRNIIHKPVEWTLIAMVLLSLLTPILGIQKHSRENVVFTQFIET LLEELHLKNEDLESLTVIFKTSC hide sequence

RefSeq Acc Id:	XP_003639145 ⟸ XM_003639097
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0MNY7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADSGGPRSPGLKARTPRASRNASGAKQTNALKQEDASKRKAELEAAVRKKIEFERKALHIVEQ LLEEDITEEFLRECGKFITPAHYSDVVDERSIIKLCGYPLCQKKLGIVPKQKYKISTKTNKVYD ITERKCFCSNFCYKASKFFEAQIPKTPVWVREEERHPDFQLLQEGQSGHSGKEVQLCTKAIKTS DIDNPGHFEKHYESGSSSSHSDNNSDNEQDFVSSILPGNRPTATGISPQLHKKSIMKKKAGQKA NSKHEDKEETVIDVTEQLGKCRLDSHGKAAACELPLQKVSPQISSNSPLQEKLEATENSENKYS SSKITLVGISKKSAEHFKRKFAKSKQDSRPASSSVQMCPEVAKANLLKVLKETLIEWKTEETLR FLYGQNYAALCLKLSSAPLVKEEELDEDDIHSDLDRHFPAFQESQNSLDESLPFRASDTAIKPL PSYENLKKETETLNLRIREFYRGRYVLSEETIKSQDSEEHDPTFPLIDSSSQNQIRKRIVLEKL SKVVPGLLGPLQITLGDIYTQLKNLVRTFRLTNRNIIHKPVEWTLIAMVLLSLLTPILGIQKHS RENVVFTQFIETLLEELHLKNEDLESLTVIFKTSC hide sequence

RefSeq Acc Id:	XP_022276183 ⟸ XM_022420475
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0QCD3 (UniProtKB/TrEMBL), A0A8I3NLF5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADSGGPRSPGLKARTPRASRNASGAKQTNALKQEDASKRKAELEAAVRKKIEFERKALHIVEQ LLEEDITEEFLRECGKFITPAHYSDVVDERSIIKLCGYPLCQKKLGIVPKQKYKISTKTNKVYD ITERKCFCSNFCYKASKFFEAQIPKTPVWVREEERHPDFQLLQEGQSGHSGKEVQLCTKAIKTS DIDNPGHFEKHYESGSSSSHSDNNSDNEQDFVSSILPGNRPTATGISPQLHKKSIMKKKAGQKA NSKHEDKEETVIDVTEQLGKCRLDSHGKAAACELPLQKVSPQISSNSPLQEKLEATENSENKYS SSKITLVGISKKSAEHFKRKFAKSKQDSRPASSSVQMCPEVAKANLLKVLKETLIEWKTEETLR FLYGQNYAALCLKLSSAPLVKEEELDEDDIHSDLDRHFPAFQESQNSLDESLPFRASDTAIKPL PSYENLKKETETLNLRIREFYRGRYVLSEETIKSQDSEEHDPTFPLIDSSSQNQIRKRIVLEKL SKVVPGLLGPLQITLGDIYTQLKNLVRTFRLTNRNIIHKPVEWTLIAMVLLSFRHSMMLFLIWT FLITTDPNSWHSEAFSGKCGVYTVYRDFA hide sequence

RefSeq Acc Id:

XP_022276187 ⟸ XM_022420479

- Peptide Label:

isoform X5

- Sequence:

show sequence

MILLKESAFAATFVTKHLSFLKHKFLKLQYGFEKRKVILRSQRRTKCQTAARHPDFQLLQEGQS
GHSGKEVQLCTKAIKTSDIDNPGHFEKHYESGSSSSHSDNNSDNEQDFVSSILPGNRPTATGIS
PQLHKKSIMKKKAGQKANSKHEDKEETVIDVTEQLGKCRLDSHGKAAACELPLQKVSPQISSNS
PLQEKLEATENSENKYSSSKITLVGISKKSAEHFKRKFAKSKQDSRPASSSVQMCPEVAKANLL
KVLKETLIEWKTEETLRFLYGQNYAALCLKLSSAPLVKEEELDEDDIHSDLDRHFPAFQESQNS
LDESLPFRASDTAIKPLPSYENLKKETETLNLRIREFYRGRYVLSEETIKSQDSEEHDPTFPLI
DSSSQNQIRKRIVLEKLSKVVPGLLGPLQITLGDIYTQLKNLVRTFRLTNRNIIHKPVEWTLIA
MVLLSLLTPILGIQKHSRENVVFTQFIETLLEELHLKNEDLESLTVIFKTSC

hide sequence

RefSeq Acc Id:	XP_022276186 ⟸ XM_022420478
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0QCD3 (UniProtKB/TrEMBL), A0A8I3NLF5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADSGGPRSPGLKARTPRASRNASGAKQTNALKQEDASKRKAELEAAVRKKIEFERKALHIVEQ LLEEDITEEFLRECGKFITPAHYSDVVDERSIIKLCGYPLCQKKLGIVPKQKYKISTKTNKVYD ITERKCFCSNFCYKASKFFEAQIPKTPVWVREEERHPDFQLLQEGQSGHSGKEVQLCTKAIKTS DIDNPGHFEKHYESGSSSSHSDNNSDNEQDFVSSILPGNRPTATGISPQLHKKSIMKKKAGQKA NSKHEDKEETVIDVTEQLGKCRLDSHGKAAACELPLQKVSPQISSNSPLQEKLEATENSENKYS SSKITLVGISKKSAEHFKRKFAKSKQDSRPASSSVQMCPEVAKANLLKVLKETLIEWKTEETLR FLYGQNYAALCLKLSSAPLVKEEELDEDDIHSDLDRHFPAFQESQNSLDESLPFRASDTAIKPL PSYENLKKETETLNLRIREFYRGRYVLSEETIKSQDSEEHDPTFPLIDSSSQNQIRKRIVLEKL SKVVPGLLGPLQITLGDIYTQLKNLVRTFRFSQA hide sequence

RefSeq Acc Id:	XP_038335977 ⟸ XM_038480049
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038335978 ⟸ XM_038480050
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038335976 ⟸ XM_038480048
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038335981 ⟸ XM_038480053
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038335980 ⟸ XM_038480052
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038335979 ⟸ XM_038480051
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038461426 ⟸ XM_038605498
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038461425 ⟸ XM_038605497
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038461424 ⟸ XM_038605496
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038461429 ⟸ XM_038605501
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038461428 ⟸ XM_038605500
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038461427 ⟸ XM_038605499
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038526057 ⟸ XM_038670129
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0QCD3 (UniProtKB/TrEMBL), A0A8I3NLF5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038526058 ⟸ XM_038670130
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0Q4Z4 (UniProtKB/TrEMBL), A0A8I3P5K5 (UniProtKB/TrEMBL), A0A8C0MNY7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038526056 ⟸ XM_038670128
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KHV4 (UniProtKB/TrEMBL), A0A8C0QB34 (UniProtKB/TrEMBL), A0A8C0MNY7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038526061 ⟸ XM_038670133
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038526060 ⟸ XM_038670132
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038526059 ⟸ XM_038670131
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0QCD3 (UniProtKB/TrEMBL), A0A8I3NLF5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038397291 ⟸ XM_038541363
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0QCD3 (UniProtKB/TrEMBL), A0A8I3NLF5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038397293 ⟸ XM_038541365
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0MNY7 (UniProtKB/TrEMBL), A0A8C0Q4Z4 (UniProtKB/TrEMBL), A0A8I3P5K5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038397290 ⟸ XM_038541362
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KHV4 (UniProtKB/TrEMBL), A0A8C0MNY7 (UniProtKB/TrEMBL), A0A8C0QB34 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038397296 ⟸ XM_038541368
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038397295 ⟸ XM_038541367
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038397294 ⟸ XM_038541366
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0QCD3 (UniProtKB/TrEMBL), A0A8I3NLF5 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845021728 ⟸ ENSCAFT00845027614

RefSeq Acc Id:

ENSCAFP00845021757 ⟸ ENSCAFT00845027646

RefSeq Acc Id:

ENSCAFP00845021784 ⟸ ENSCAFT00845027681

Protein Domains

RTR1-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000020158	UniProtKB/TrEMBL
	ENSCAFG00030005130	UniProtKB/TrEMBL
	ENSCAFG00030009026	UniProtKB/TrEMBL
	ENSCAFG00040005383	UniProtKB/TrEMBL
	ENSCAFG00845015489	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000032095.5	UniProtKB/TrEMBL
	ENSCAFT00030009389.1	UniProtKB/TrEMBL
	ENSCAFT00030016744.1	UniProtKB/TrEMBL
	ENSCAFT00040010216.1	UniProtKB/TrEMBL
	ENSCAFT00040010302.1	UniProtKB/TrEMBL
	ENSCAFT00040010348.1	UniProtKB/TrEMBL
	ENSCAFT00040010408.1	UniProtKB/TrEMBL
	ENSCAFT00040010462.1	UniProtKB/TrEMBL
	ENSCAFT00845027614	ENTREZGENE
	ENSCAFT00845027614.1	UniProtKB/TrEMBL
	ENSCAFT00845027646.1	UniProtKB/TrEMBL
	ENSCAFT00845027681	ENTREZGENE
	ENSCAFT00845027681.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.820	UniProtKB/TrEMBL
InterPro	Rtr1/RPAP2	UniProtKB/TrEMBL
	Rtr1/RPAP2_dom	UniProtKB/TrEMBL
	Rtr1/RPAP2_sf	UniProtKB/TrEMBL
NCBI Gene	RPAP2	ENTREZGENE
PANTHER	PTHR14732	UniProtKB/TrEMBL
	RNA POLYMERASE II SUBUNIT B1 CTD PHOSPHATASE RPAP2-RELATED	UniProtKB/TrEMBL
Pfam	RPAP2_Rtr1	UniProtKB/TrEMBL
PROSITE	ZF_RTR1	UniProtKB/TrEMBL
UniProt	A0A8C0KHV4	ENTREZGENE
	A0A8C0MNY7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0Q4Z4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0QB34	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0QCD3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0QHW3_CANLF	UniProtKB/TrEMBL
	A0A8C0RYH0_CANLF	UniProtKB/TrEMBL
	A0A8I3NLF5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NMT7_CANLF	UniProtKB/TrEMBL
	A0A8I3P5K5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0NLM2_CANLF	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

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Imported Disease Annotations - ClinVar

RGD Manual Annotations