LINGO1 (leucine rich repeat and Ig domain containing 1) - Rat Genome Database

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Gene: LINGO1 (leucine rich repeat and Ig domain containing 1) Canis lupus familiaris
Analyze
Symbol: LINGO1
Name: leucine rich repeat and Ig domain containing 1
RGD ID: 12411908
Description: ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); INVOLVED IN central nervous system neuron development (ortholog); negative regulation of oligodendrocyte differentiation (ortholog); negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 64 (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN glutamatergic synapse (ortholog); presynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13038,668,199 - 38,738,178 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3038,721,394 - 38,737,464 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3038,590,466 - 38,611,287 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03038,873,710 - 38,942,658 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3038,866,779 - 38,942,655 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13038,718,990 - 38,892,481 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03038,870,129 - 38,939,024 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03039,107,012 - 39,176,028 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LINGO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13038,668,199 - 38,738,178 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3038,721,394 - 38,737,464 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3038,590,466 - 38,611,287 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03038,873,710 - 38,942,658 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3038,866,779 - 38,942,655 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13038,718,990 - 38,892,481 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03038,870,129 - 38,939,024 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03039,107,012 - 39,176,028 (+)NCBIUU_Cfam_GSD_1.0
LINGO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381577,613,027 - 77,820,900 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1577,613,027 - 77,820,900 (-)EnsemblGRCh38hg38GRCh38
GRCh371577,905,369 - 78,113,242 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361575,692,424 - 75,711,764 (-)NCBINCBI36Build 36hg18NCBI36
Build 341575,692,423 - 75,711,764NCBI
Celera1554,843,608 - 54,862,572 (-)NCBICelera
Cytogenetic Map15q24.3NCBI
HuRef1554,660,535 - 54,680,264 (-)NCBIHuRef
CHM1_11578,023,300 - 78,042,675 (-)NCBICHM1_1
T2T-CHM13v2.01575,473,724 - 75,683,106 (-)NCBIT2T-CHM13v2.0
Lingo1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39956,525,743 - 56,704,355 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl956,525,759 - 56,703,752 (-)EnsemblGRCm39 Ensembl
GRCm38956,618,460 - 56,796,310 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl956,618,475 - 56,796,468 (-)EnsemblGRCm38mm10GRCm38
MGSCv37956,466,282 - 56,533,060 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36956,416,612 - 56,483,390 (-)NCBIMGSCv36mm8
Celera953,844,163 - 53,910,841 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map930.28NCBI
Lingo1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8865,907,275 - 66,089,485 (-)NCBIGRCr8
mRatBN7.2857,011,272 - 57,193,496 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl857,010,007 - 57,196,544 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx862,541,946 - 62,558,082 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0860,820,958 - 60,837,094 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0858,685,217 - 58,701,353 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0861,272,125 - 61,455,480 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl861,274,017 - 61,290,240 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0859,842,273 - 60,025,178 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4860,335,369 - 60,351,617 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1860,353,788 - 60,376,585 (-)NCBI
Celera856,482,212 - 56,498,460 (-)NCBICelera
Cytogenetic Map8q24NCBI
Lingo1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554502,435,662 - 2,452,213 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554502,435,768 - 2,493,387 (-)NCBIChiLan1.0ChiLan1.0
LINGO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21666,708,662 - 67,030,680 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11570,874,422 - 71,196,329 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01556,424,422 - 56,747,075 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11572,328,076 - 72,534,429 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1572,328,079 - 72,347,016 (-)Ensemblpanpan1.1panPan2
Lingo1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640116,690,565 - 116,881,599 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647134,706,198 - 34,731,037 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647134,657,073 - 34,729,662 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LINGO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl757,684,589 - 57,890,126 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1757,684,591 - 57,890,121 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2762,376,757 - 62,583,077 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LINGO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1265,485,059 - 5,690,531 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl265,688,293 - 5,690,155 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048136,058,467 - 136,267,092 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lingo1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624894648,785 - 791,168 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624894648,357 - 791,168 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LINGO1
1876 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005638642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022412599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038443021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038517453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038581047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038581048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038581049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038581050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038581051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038581052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038581053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038645418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038645419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038645420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038645421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038645422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038645423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038645424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_544785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005316469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005348135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000028688   ⟹   ENSCAFP00000026684
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3038,721,394 - 38,737,197 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000063373   ⟹   ENSCAFP00000058956
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3038,721,394 - 38,737,464 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000063763   ⟹   ENSCAFP00000060328
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3038,721,394 - 38,737,197 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000092295   ⟹   ENSCAFP00000064151
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3038,733,924 - 38,737,197 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845037458   ⟹   ENSCAFP00845029347
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3038,866,779 - 38,942,651 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845037489   ⟹   ENSCAFP00845029372
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3038,866,788 - 38,942,655 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845037528   ⟹   ENSCAFP00845029401
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3038,923,866 - 38,942,003 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845037562   ⟹   ENSCAFP00845029429
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3038,926,116 - 38,941,945 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845037587   ⟹   ENSCAFP00845029448
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3038,926,928 - 38,941,945 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845037611   ⟹   ENSCAFP00845029467
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3038,936,944 - 38,941,945 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845037633   ⟹   ENSCAFP00845029488
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl3038,938,450 - 38,941,945 (+)Ensembl
RefSeq Acc Id: XM_038443015   ⟹   XP_038298943
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03038,925,975 - 38,942,658 (+)NCBI
RefSeq Acc Id: XM_038443016   ⟹   XP_038298944
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03038,886,978 - 38,942,658 (+)NCBI
RefSeq Acc Id: XM_038443017   ⟹   XP_038298945
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03038,920,674 - 38,942,658 (+)NCBI
RefSeq Acc Id: XM_038443018   ⟹   XP_038298946
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03038,923,869 - 38,942,658 (+)NCBI
RefSeq Acc Id: XM_038443019   ⟹   XP_038298947
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03038,873,710 - 38,942,658 (+)NCBI
RefSeq Acc Id: XM_038443020   ⟹   XP_038298948
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03038,873,787 - 38,942,658 (+)NCBI
RefSeq Acc Id: XM_038443021   ⟹   XP_038298949
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03038,923,338 - 38,942,658 (+)NCBI
RefSeq Acc Id: XM_038517440   ⟹   XP_038373368
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13038,875,821 - 38,892,481 (+)NCBI
RefSeq Acc Id: XM_038517441   ⟹   XP_038373369
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13038,737,734 - 38,892,481 (+)NCBI
RefSeq Acc Id: XM_038517442   ⟹   XP_038373370
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13038,737,734 - 38,892,481 (+)NCBI
RefSeq Acc Id: XM_038517443   ⟹   XP_038373371
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13038,719,340 - 38,892,481 (+)NCBI
RefSeq Acc Id: XM_038517444   ⟹   XP_038373372
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13038,718,990 - 38,892,481 (+)NCBI
RefSeq Acc Id: XM_038517445   ⟹   XP_038373373
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13038,720,769 - 38,892,481 (+)NCBI
RefSeq Acc Id: XM_038517446   ⟹   XP_038373374
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13038,720,767 - 38,892,481 (+)NCBI
RefSeq Acc Id: XM_038517447   ⟹   XP_038373375
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13038,737,734 - 38,892,481 (+)NCBI
RefSeq Acc Id: XM_038517448   ⟹   XP_038373376
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13038,816,550 - 38,892,481 (+)NCBI
RefSeq Acc Id: XM_038517449   ⟹   XP_038373377
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13038,870,490 - 38,892,481 (+)NCBI
RefSeq Acc Id: XM_038517450   ⟹   XP_038373378
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13038,863,478 - 38,892,481 (+)NCBI
RefSeq Acc Id: XM_038517451   ⟹   XP_038373379
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13038,873,697 - 38,892,481 (+)NCBI
RefSeq Acc Id: XM_038517452   ⟹   XP_038373380
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13038,823,565 - 38,892,481 (+)NCBI
RefSeq Acc Id: XM_038517453   ⟹   XP_038373381
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13038,873,166 - 38,892,481 (+)NCBI
RefSeq Acc Id: XM_038581047   ⟹   XP_038436975
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03039,159,330 - 39,176,028 (+)NCBI
RefSeq Acc Id: XM_038581048   ⟹   XP_038436976
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03039,120,274 - 39,176,028 (+)NCBI
RefSeq Acc Id: XM_038581049   ⟹   XP_038436977
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03039,154,028 - 39,176,028 (+)NCBI
RefSeq Acc Id: XM_038581050   ⟹   XP_038436978
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03039,157,221 - 39,176,028 (+)NCBI
RefSeq Acc Id: XM_038581051   ⟹   XP_038436979
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03039,107,012 - 39,176,028 (+)NCBI
RefSeq Acc Id: XM_038581052   ⟹   XP_038436980
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03039,107,059 - 39,176,028 (+)NCBI
RefSeq Acc Id: XM_038581053   ⟹   XP_038436981
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03039,156,690 - 39,176,028 (+)NCBI
RefSeq Acc Id: XM_038645418   ⟹   XP_038501346
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03038,922,357 - 38,939,024 (+)NCBI
RefSeq Acc Id: XM_038645419   ⟹   XP_038501347
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03038,883,380 - 38,939,024 (+)NCBI
RefSeq Acc Id: XM_038645420   ⟹   XP_038501348
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03038,917,069 - 38,939,024 (+)NCBI
RefSeq Acc Id: XM_038645421   ⟹   XP_038501349
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03038,920,261 - 38,939,024 (+)NCBI
RefSeq Acc Id: XM_038645422   ⟹   XP_038501350
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03038,870,129 - 38,939,024 (+)NCBI
RefSeq Acc Id: XM_038645423   ⟹   XP_038501351
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03038,870,176 - 38,939,024 (+)NCBI
RefSeq Acc Id: XM_038645424   ⟹   XP_038501352
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03038,919,731 - 38,939,024 (+)NCBI
RefSeq Acc Id: XR_005316469
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3038,590,466 - 38,611,287 (+)NCBI
RefSeq Acc Id: XR_005348135
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13038,737,516 - 38,869,886 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038298943 (Get FASTA)   NCBI Sequence Viewer  
  XP_038298944 (Get FASTA)   NCBI Sequence Viewer  
  XP_038298945 (Get FASTA)   NCBI Sequence Viewer  
  XP_038298946 (Get FASTA)   NCBI Sequence Viewer  
  XP_038298947 (Get FASTA)   NCBI Sequence Viewer  
  XP_038298948 (Get FASTA)   NCBI Sequence Viewer  
  XP_038298949 (Get FASTA)   NCBI Sequence Viewer  
  XP_038373368 (Get FASTA)   NCBI Sequence Viewer  
  XP_038373369 (Get FASTA)   NCBI Sequence Viewer  
  XP_038373370 (Get FASTA)   NCBI Sequence Viewer  
  XP_038373371 (Get FASTA)   NCBI Sequence Viewer  
  XP_038373372 (Get FASTA)   NCBI Sequence Viewer  
  XP_038373373 (Get FASTA)   NCBI Sequence Viewer  
  XP_038373374 (Get FASTA)   NCBI Sequence Viewer  
  XP_038373375 (Get FASTA)   NCBI Sequence Viewer  
  XP_038373376 (Get FASTA)   NCBI Sequence Viewer  
  XP_038373377 (Get FASTA)   NCBI Sequence Viewer  
  XP_038373378 (Get FASTA)   NCBI Sequence Viewer  
  XP_038373379 (Get FASTA)   NCBI Sequence Viewer  
  XP_038373380 (Get FASTA)   NCBI Sequence Viewer  
  XP_038373381 (Get FASTA)   NCBI Sequence Viewer  
  XP_038436975 (Get FASTA)   NCBI Sequence Viewer  
  XP_038436976 (Get FASTA)   NCBI Sequence Viewer  
  XP_038436977 (Get FASTA)   NCBI Sequence Viewer  
  XP_038436978 (Get FASTA)   NCBI Sequence Viewer  
  XP_038436979 (Get FASTA)   NCBI Sequence Viewer  
  XP_038436980 (Get FASTA)   NCBI Sequence Viewer  
  XP_038436981 (Get FASTA)   NCBI Sequence Viewer  
  XP_038501346 (Get FASTA)   NCBI Sequence Viewer  
  XP_038501347 (Get FASTA)   NCBI Sequence Viewer  
  XP_038501348 (Get FASTA)   NCBI Sequence Viewer  
  XP_038501349 (Get FASTA)   NCBI Sequence Viewer  
  XP_038501350 (Get FASTA)   NCBI Sequence Viewer  
  XP_038501351 (Get FASTA)   NCBI Sequence Viewer  
  XP_038501352 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00030012928.1
  ENSCAFP00030012944.1
  ENSCAFP00030012970.1
  ENSCAFP00040035594.1
  ENSCAFP00040035605.1
  ENSCAFP00040035608.1
  ENSCAFP00845029347
  ENSCAFP00845029347.1
  ENSCAFP00845029372
  ENSCAFP00845029372.1
  ENSCAFP00845029401
  ENSCAFP00845029401.1
  ENSCAFP00845029429
  ENSCAFP00845029429.1
  ENSCAFP00845029448.1
  ENSCAFP00845029467.1
  ENSCAFP00845029488.1
Ensembl Acc Id: ENSCAFP00000026684   ⟸   ENSCAFT00000028688
Ensembl Acc Id: ENSCAFP00000058956   ⟸   ENSCAFT00000063373
Ensembl Acc Id: ENSCAFP00000060328   ⟸   ENSCAFT00000063763
Ensembl Acc Id: ENSCAFP00000064151   ⟸   ENSCAFT00000092295
RefSeq Acc Id: XP_038373372   ⟸   XM_038517444
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038373371   ⟸   XM_038517443
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038373374   ⟸   XM_038517446
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038373373   ⟸   XM_038517445
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038373370   ⟸   XM_038517442
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038373369   ⟸   XM_038517441
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038373375   ⟸   XM_038517447
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038373376   ⟸   XM_038517448
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038373380   ⟸   XM_038517452
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038373378   ⟸   XM_038517450
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038373377   ⟸   XM_038517449
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038373381   ⟸   XM_038517453
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038373379   ⟸   XM_038517451
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038373368   ⟸   XM_038517440
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038501350   ⟸   XM_038645422
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038501351   ⟸   XM_038645423
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038501347   ⟸   XM_038645419
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038501348   ⟸   XM_038645420
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038501352   ⟸   XM_038645424
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038501349   ⟸   XM_038645421
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038501346   ⟸   XM_038645418
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038298947   ⟸   XM_038443019
- Peptide Label: isoform X2
- UniProtKB: A0A8I3S4U1 (UniProtKB/TrEMBL),   A0A8C0JRG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298948   ⟸   XM_038443020
- Peptide Label: isoform X2
- UniProtKB: A0A8I3S4U1 (UniProtKB/TrEMBL),   A0A8C0JRG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298944   ⟸   XM_038443016
- Peptide Label: isoform X2
- UniProtKB: A0A8I3S4U1 (UniProtKB/TrEMBL),   A0A8C0JRG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298945   ⟸   XM_038443017
- Peptide Label: isoform X2
- UniProtKB: A0A8I3S4U1 (UniProtKB/TrEMBL),   A0A8C0JRG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298949   ⟸   XM_038443021
- Peptide Label: isoform X2
- UniProtKB: A0A8I3S4U1 (UniProtKB/TrEMBL),   A0A8C0JRG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298946   ⟸   XM_038443018
- Peptide Label: isoform X2
- UniProtKB: A0A8I3S4U1 (UniProtKB/TrEMBL),   A0A8C0JRG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298943   ⟸   XM_038443015
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TDM2 (UniProtKB/TrEMBL),   A0A8I3P7E1 (UniProtKB/TrEMBL),   A0A8C0JRG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436979   ⟸   XM_038581051
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JRG6 (UniProtKB/TrEMBL),   A0A8I3S4U1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436980   ⟸   XM_038581052
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JRG6 (UniProtKB/TrEMBL),   A0A8I3S4U1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436976   ⟸   XM_038581048
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JRG6 (UniProtKB/TrEMBL),   A0A8I3S4U1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436977   ⟸   XM_038581049
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JRG6 (UniProtKB/TrEMBL),   A0A8I3S4U1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436981   ⟸   XM_038581053
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JRG6 (UniProtKB/TrEMBL),   A0A8I3S4U1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436978   ⟸   XM_038581050
- Peptide Label: isoform X2
- UniProtKB: A0A8C0JRG6 (UniProtKB/TrEMBL),   A0A8I3S4U1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436975   ⟸   XM_038581047
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JRG6 (UniProtKB/TrEMBL),   A0A8C0TDM2 (UniProtKB/TrEMBL),   A0A8I3P7E1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845029429   ⟸   ENSCAFT00845037562
Ensembl Acc Id: ENSCAFP00845029401   ⟸   ENSCAFT00845037528
Ensembl Acc Id: ENSCAFP00845029448   ⟸   ENSCAFT00845037587
Ensembl Acc Id: ENSCAFP00845029372   ⟸   ENSCAFT00845037489
Ensembl Acc Id: ENSCAFP00845029488   ⟸   ENSCAFT00845037633
Ensembl Acc Id: ENSCAFP00845029347   ⟸   ENSCAFT00845037458
Ensembl Acc Id: ENSCAFP00845029467   ⟸   ENSCAFT00845037611
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018057 Ensembl
  ENSCAFG00030008079 UniProtKB/TrEMBL
  ENSCAFG00040021991 UniProtKB/TrEMBL
  ENSCAFG00845021231 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030014820.1 UniProtKB/TrEMBL
  ENSCAFT00030014836.1 UniProtKB/TrEMBL
  ENSCAFT00030014869.1 UniProtKB/TrEMBL
  ENSCAFT00040040813.1 UniProtKB/TrEMBL
  ENSCAFT00040040822.1 UniProtKB/TrEMBL
  ENSCAFT00040040828.1 UniProtKB/TrEMBL
  ENSCAFT00845037458 ENTREZGENE
  ENSCAFT00845037458.1 UniProtKB/TrEMBL
  ENSCAFT00845037489 ENTREZGENE
  ENSCAFT00845037489.1 UniProtKB/TrEMBL
  ENSCAFT00845037528 ENTREZGENE
  ENSCAFT00845037528.1 UniProtKB/TrEMBL
  ENSCAFT00845037562 ENTREZGENE
  ENSCAFT00845037562.1 UniProtKB/TrEMBL
  ENSCAFT00845037587.1 UniProtKB/TrEMBL
  ENSCAFT00845037611.1 UniProtKB/TrEMBL
  ENSCAFT00845037633.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro Dev_Immune_Receptor UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
NCBI Gene LINGO1 ENTREZGENE
PANTHER LEUCINE-RICH REPEAT AND IMMUNOGLOBULIN-LIKE DOMAIN-CONTAINING NOGO RECEPTOR-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
  SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  LRR UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A0A8C0JRG6 ENTREZGENE
  A0A8C0MQI1_CANLF UniProtKB/TrEMBL
  A0A8C0TDM2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0TGU1_CANLF UniProtKB/TrEMBL
  A0A8C0Z458_CANLF UniProtKB/TrEMBL
  A0A8I3P7E1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P7M0_CANLF UniProtKB/TrEMBL
  A0A8I3PGA6_CANLF UniProtKB/TrEMBL
  A0A8I3PMP9_CANLF UniProtKB/TrEMBL
  A0A8I3S4U1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:42688 ENTREZGENE