ACSM5 (acyl-CoA synthetase medium chain family member 5) - Rat Genome Database

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Gene: ACSM5 (acyl-CoA synthetase medium chain family member 5) Canis lupus familiaris
Analyze
Symbol: ACSM5
Name: acyl-CoA synthetase medium chain family member 5
RGD ID: 12395590
Description: ENCODES a protein that exhibits acid-thiol ligase activity (inferred); CoA-ligase activity (inferred); ligase activity (inferred); INVOLVED IN fatty acid metabolic process (inferred); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acyl-CoA synthetase medium-chain family member 5; acyl-coenzyme A synthetase ACSM5, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1624,907,766 - 24,943,841 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl624,907,236 - 24,940,862 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha639,132,530 - 39,168,614 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0625,061,811 - 25,097,894 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl625,061,290 - 25,094,664 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1624,862,666 - 24,898,749 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0624,757,794 - 24,793,879 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0625,145,748 - 25,181,821 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ACSM5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1624,907,766 - 24,943,841 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl624,907,236 - 24,940,862 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha639,132,530 - 39,168,614 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0625,061,811 - 25,097,894 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl625,061,290 - 25,094,664 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1624,862,666 - 24,898,749 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0624,757,794 - 24,793,879 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0625,145,748 - 25,181,821 (-)NCBIUU_Cfam_GSD_1.0
ACSM5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381620,409,534 - 20,441,336 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1620,409,534 - 20,441,336 (+)EnsemblGRCh38hg38GRCh38
GRCh371620,420,856 - 20,452,658 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361620,328,357 - 20,359,791 (+)NCBINCBI36Build 36hg18NCBI36
Celera1619,570,305 - 19,620,803 (+)NCBICelera
Cytogenetic Map16p12.3NCBI
HuRef1618,957,265 - 18,988,605 (+)NCBIHuRef
CHM1_11620,509,049 - 20,540,458 (+)NCBICHM1_1
T2T-CHM13v2.01620,340,542 - 20,372,354 (+)NCBIT2T-CHM13v2.0
Acsm5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397119,125,354 - 119,142,583 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7119,118,686 - 119,144,774 (+)EnsemblGRCm39 Ensembl
GRCm387119,526,131 - 119,543,360 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7119,519,463 - 119,545,551 (+)EnsemblGRCm38mm10GRCm38
MGSCv377126,669,779 - 126,686,874 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367119,317,390 - 119,334,942 (+)NCBIMGSCv36mm8
Celera7119,443,888 - 119,461,026 (+)NCBICelera
Cytogenetic Map7F2NCBI
cM Map763.94NCBI
Acsm5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81183,302,241 - 183,328,175 (+)NCBIGRCr8
mRatBN7.21173,870,873 - 173,896,838 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1173,863,041 - 173,898,588 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1182,182,608 - 182,209,756 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01189,368,714 - 189,395,865 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01182,103,934 - 182,131,081 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01189,240,955 - 189,270,422 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1189,233,141 - 189,272,172 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01196,182,194 - 196,208,230 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41177,785,186 - 177,808,572 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11177,924,431 - 177,947,815 (+)NCBI
Celera1171,623,897 - 171,653,739 (+)NCBICelera
Cytogenetic Map1q35NCBI
Acsm5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554424,046,714 - 4,076,044 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554424,047,059 - 4,075,158 (+)NCBIChiLan1.0ChiLan1.0
ACSM5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21821,674,412 - 21,710,286 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11626,194,536 - 26,225,903 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01617,870,259 - 17,901,984 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11620,505,983 - 20,764,275 (+)NCBIpanpan1.1PanPan1.1panPan2
Acsm5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344117,794,121 - 117,818,115 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365015,891,900 - 5,916,031 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365015,891,989 - 5,915,929 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACSM5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl325,393,190 - 25,422,476 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1325,393,121 - 25,422,551 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2326,172,262 - 26,260,399 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACSM5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1518,695,695 - 18,727,551 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl518,698,330 - 18,726,765 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606811,178,507 - 11,209,583 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acsm5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247823,709,020 - 3,731,601 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247823,708,941 - 3,729,359 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ACSM5
288 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005621482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022420024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022420025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022420026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038478962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038478963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038478964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038478965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038478966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038478967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038540204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038548738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038604290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038604291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038604292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038604294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038604295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038604296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038669002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038669003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038669004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038669005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038669006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038669007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_846187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002627568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005326950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005395391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005428531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000028561   ⟹   ENSCAFP00000026566
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl624,907,236 - 24,940,862 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845014345   ⟹   ENSCAFP00845011111
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl625,061,290 - 25,094,664 (-)Ensembl
RefSeq Acc Id: XM_005621482   ⟹   XP_005621539
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1624,907,766 - 24,940,379 (-)NCBI
Dog10K_Boxer_Tasha639,136,014 - 39,168,614 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022420024   ⟹   XP_022275732
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1624,907,766 - 24,943,841 (-)NCBI
Dog10K_Boxer_Tasha639,132,531 - 39,168,614 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022420025   ⟹   XP_022275733
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1624,907,766 - 24,943,841 (-)NCBI
Dog10K_Boxer_Tasha639,132,531 - 39,168,614 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022420026   ⟹   XP_022275734
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1624,907,766 - 24,943,841 (-)NCBI
Dog10K_Boxer_Tasha639,132,530 - 39,168,614 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038478962   ⟹   XP_038334890
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1624,862,666 - 24,898,748 (-)NCBI
RefSeq Acc Id: XM_038478963   ⟹   XP_038334891
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1624,862,666 - 24,896,545 (-)NCBI
RefSeq Acc Id: XM_038478964   ⟹   XP_038334892
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1624,862,666 - 24,898,749 (-)NCBI
RefSeq Acc Id: XM_038478965   ⟹   XP_038334893
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1624,862,666 - 24,895,265 (-)NCBI
RefSeq Acc Id: XM_038478966   ⟹   XP_038334894
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1624,862,666 - 24,895,264 (-)NCBI
RefSeq Acc Id: XM_038478967   ⟹   XP_038334895
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1624,862,666 - 24,898,749 (-)NCBI
RefSeq Acc Id: XM_038540204   ⟹   XP_038396132
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0625,145,748 - 25,181,821 (-)NCBI
RefSeq Acc Id: XM_038548738   ⟹   XP_038404666
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha639,134,734 - 39,168,614 (+)NCBI
RefSeq Acc Id: XM_038604290   ⟹   XP_038460218
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0624,757,794 - 24,793,878 (-)NCBI
RefSeq Acc Id: XM_038604291   ⟹   XP_038460219
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0624,757,794 - 24,791,675 (-)NCBI
RefSeq Acc Id: XM_038604292   ⟹   XP_038460220
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0624,757,794 - 24,793,879 (-)NCBI
RefSeq Acc Id: XM_038604294   ⟹   XP_038460222
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0624,757,794 - 24,790,395 (-)NCBI
RefSeq Acc Id: XM_038604295   ⟹   XP_038460223
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0624,757,794 - 24,790,394 (-)NCBI
RefSeq Acc Id: XM_038604296   ⟹   XP_038460224
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0624,757,794 - 24,793,879 (-)NCBI
RefSeq Acc Id: XM_038669002   ⟹   XP_038524930
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0625,061,811 - 25,097,893 (-)NCBI
RefSeq Acc Id: XM_038669003   ⟹   XP_038524931
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0625,061,811 - 25,095,690 (-)NCBI
RefSeq Acc Id: XM_038669004   ⟹   XP_038524932
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0625,061,811 - 25,097,894 (-)NCBI
RefSeq Acc Id: XM_038669005   ⟹   XP_038524933
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0625,061,811 - 25,094,410 (-)NCBI
RefSeq Acc Id: XM_038669006   ⟹   XP_038524934
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0625,061,811 - 25,094,409 (-)NCBI
RefSeq Acc Id: XM_038669007   ⟹   XP_038524935
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0625,061,811 - 25,097,894 (-)NCBI
RefSeq Acc Id: XM_846187   ⟹   XP_851280
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1624,907,766 - 24,940,383 (-)NCBI
Dog10K_Boxer_Tasha639,136,015 - 39,168,614 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002627568
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1624,908,613 - 24,943,841 (-)NCBI
Dog10K_Boxer_Tasha639,132,531 - 39,167,757 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005326950
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1624,863,522 - 24,898,749 (-)NCBI
RefSeq Acc Id: XR_005395391
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0624,758,650 - 24,793,879 (-)NCBI
RefSeq Acc Id: XR_005428531
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0625,062,667 - 25,097,894 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005621539 (Get FASTA)   NCBI Sequence Viewer  
  XP_022275732 (Get FASTA)   NCBI Sequence Viewer  
  XP_022275733 (Get FASTA)   NCBI Sequence Viewer  
  XP_022275734 (Get FASTA)   NCBI Sequence Viewer  
  XP_038334890 (Get FASTA)   NCBI Sequence Viewer  
  XP_038334891 (Get FASTA)   NCBI Sequence Viewer  
  XP_038334892 (Get FASTA)   NCBI Sequence Viewer  
  XP_038334893 (Get FASTA)   NCBI Sequence Viewer  
  XP_038334894 (Get FASTA)   NCBI Sequence Viewer  
  XP_038334895 (Get FASTA)   NCBI Sequence Viewer  
  XP_038396132 (Get FASTA)   NCBI Sequence Viewer  
  XP_038404666 (Get FASTA)   NCBI Sequence Viewer  
  XP_038460218 (Get FASTA)   NCBI Sequence Viewer  
  XP_038460219 (Get FASTA)   NCBI Sequence Viewer  
  XP_038460220 (Get FASTA)   NCBI Sequence Viewer  
  XP_038460222 (Get FASTA)   NCBI Sequence Viewer  
  XP_038460223 (Get FASTA)   NCBI Sequence Viewer  
  XP_038460224 (Get FASTA)   NCBI Sequence Viewer  
  XP_038524930 (Get FASTA)   NCBI Sequence Viewer  
  XP_038524931 (Get FASTA)   NCBI Sequence Viewer  
  XP_038524932 (Get FASTA)   NCBI Sequence Viewer  
  XP_038524933 (Get FASTA)   NCBI Sequence Viewer  
  XP_038524934 (Get FASTA)   NCBI Sequence Viewer  
  XP_038524935 (Get FASTA)   NCBI Sequence Viewer  
  XP_851280 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000026566.3
  ENSCAFP00030000532.1
  ENSCAFP00040000563.1
  ENSCAFP00845011111
  ENSCAFP00845011111.1
RefSeq Acc Id: XP_851280   ⟸   XM_846187
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LUZ2 (UniProtKB/TrEMBL),   A0A8I3RUC4 (UniProtKB/TrEMBL),   A0A8C0L755 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005621539   ⟸   XM_005621482
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LUZ2 (UniProtKB/TrEMBL),   A0A8I3RUC4 (UniProtKB/TrEMBL),   A0A8C0L755 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022275734   ⟸   XM_022420026
- Peptide Label: isoform X2
- UniProtKB: A0A8C0L755 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022275732   ⟸   XM_022420024
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LUZ2 (UniProtKB/TrEMBL),   A0A8I3RUC4 (UniProtKB/TrEMBL),   A0A8C0L755 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022275733   ⟸   XM_022420025
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LUZ2 (UniProtKB/TrEMBL),   A0A8I3RUC4 (UniProtKB/TrEMBL),   A0A8C0L755 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000026566   ⟸   ENSCAFT00000028561
RefSeq Acc Id: XP_038334895   ⟸   XM_038478967
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038334892   ⟸   XM_038478964
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038334890   ⟸   XM_038478962
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038334891   ⟸   XM_038478963
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038334893   ⟸   XM_038478965
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038334894   ⟸   XM_038478966
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038460224   ⟸   XM_038604296
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038460220   ⟸   XM_038604292
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038460218   ⟸   XM_038604290
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038460219   ⟸   XM_038604291
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038460222   ⟸   XM_038604294
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038460223   ⟸   XM_038604295
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038524935   ⟸   XM_038669007
- Peptide Label: isoform X2
- UniProtKB: A0A8C0L755 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524932   ⟸   XM_038669004
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LUZ2 (UniProtKB/TrEMBL),   A0A8I3RUC4 (UniProtKB/TrEMBL),   A0A8C0L755 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524930   ⟸   XM_038669002
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LUZ2 (UniProtKB/TrEMBL),   A0A8I3RUC4 (UniProtKB/TrEMBL),   A0A8C0L755 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524931   ⟸   XM_038669003
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LUZ2 (UniProtKB/TrEMBL),   A0A8I3RUC4 (UniProtKB/TrEMBL),   A0A8C0L755 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524933   ⟸   XM_038669005
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LUZ2 (UniProtKB/TrEMBL),   A0A8I3RUC4 (UniProtKB/TrEMBL),   A0A8C0L755 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524934   ⟸   XM_038669006
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LUZ2 (UniProtKB/TrEMBL),   A0A8I3RUC4 (UniProtKB/TrEMBL),   A0A8C0L755 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038404666   ⟸   XM_038548738
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LUZ2 (UniProtKB/TrEMBL),   A0A8I3RUC4 (UniProtKB/TrEMBL),   A0A8C0L755 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038396132   ⟸   XM_038540204
- Peptide Label: isoform X3
- UniProtKB: A0A8C0L755 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845011111   ⟸   ENSCAFT00845014345
Promoters
RGD ID:13683675
Promoter ID:EPDNEW_C1742
Type:initiation region
Name:ACSM5_1
Description:acyl-CoA synthetase medium chain family member 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1624,940,719 - 24,940,779EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000023658 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030000361 UniProtKB/TrEMBL
  ENSCAFG00040000395 UniProtKB/TrEMBL
  ENSCAFG00845008135 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000028561.5 UniProtKB/TrEMBL
  ENSCAFT00030000606.1 UniProtKB/TrEMBL
  ENSCAFT00040000671.1 UniProtKB/TrEMBL
  ENSCAFT00845014345 ENTREZGENE
  ENSCAFT00845014345.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.300.30 UniProtKB/TrEMBL
  3.40.50.12780 UniProtKB/TrEMBL
InterPro AMP-bd_C UniProtKB/TrEMBL
  AMP-bd_C_sf UniProtKB/TrEMBL
  AMP-binding_CS UniProtKB/TrEMBL
  AMP-dep_Synth/Lig UniProtKB/TrEMBL
  ANL_N_sf UniProtKB/TrEMBL
  Mitochondrial_ACSM UniProtKB/TrEMBL
KEGG Report cfa:609009 UniProtKB/TrEMBL
NCBI Gene ACSM5 ENTREZGENE
PANTHER ACYL-COENZYME A SYNTHETASE UniProtKB/TrEMBL
  ACYL-COENZYME A SYNTHETASE ACSM5, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam AMP-binding UniProtKB/TrEMBL
  AMP-binding_C UniProtKB/TrEMBL
PROSITE AMP_BINDING UniProtKB/TrEMBL
Superfamily-SCOP Acetyl-CoA synthetase-like UniProtKB/TrEMBL
UniProt A0A8C0L755 ENTREZGENE
  A0A8C0LUZ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RUC4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:37536 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-20 ACSM5  acyl-CoA synthetase medium chain family member 5    acyl-CoA synthetase medium-chain family member 5  Symbol and/or name change 5135510 APPROVED