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Gene: CERS4 (ceramide synthase 4) Canis lupus familiaris

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Symbol:

CERS4

Name:

ceramide synthase 4

RGD ID:

12366139

Description:

ENCODES a protein that exhibits DNA binding (inferred); sphingosine N-acyltransferase activity (inferred); transferase activity (inferred); INVOLVED IN ceramide biosynthetic process (ortholog); sphingolipid biosynthetic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial hemophagocytic lymphohistiocytosis 5 (ortholog); mucolipidosis type IV (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LAG1 homolog, ceramide synthase 4; LAG1 longevity assurance homolog 4; LASS4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CERS4 (ceramide synthase 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cers4 (ceramide synthase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cers4 (ceramide synthase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cers4 (ceramide synthase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CERS4 (ceramide synthase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cers4 (ceramide synthase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CERS4 (ceramide synthase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CERS4 (ceramide synthase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cers4 (ceramide synthase 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	52,829,482 - 52,860,783 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	52,829,316 - 52,860,803 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	52,630,184 - 52,662,189 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	53,356,351 - 53,388,350 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	53,357,348 - 53,388,669 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	52,559,172 - 52,591,152 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	53,004,363 - 53,036,367 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	53,235,869 - 53,267,895 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

familial hemophagocytic lymphohistiocytosis 5 (ISO)

mucolipidosis type IV (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ceramide biosynthetic process (IEA,ISO)

lipid metabolic process (IEA)

sphingolipid biosynthetic process (ISO)

sphingolipid metabolic process (IEA)

Cellular Component

endoplasmic reticulum (IEA)

endoplasmic reticulum membrane (IEA)

membrane (IEA)

nucleus (IEA)

Molecular Function

DNA binding (IEA)

protein binding (ISO)

sphingosine N-acyltransferase activity (IEA)

transferase activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CERS4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	52,829,482 - 52,860,783 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	52,829,316 - 52,860,803 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	52,630,184 - 52,662,189 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	53,356,351 - 53,388,350 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	53,357,348 - 53,388,669 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	52,559,172 - 52,591,152 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	53,004,363 - 53,036,367 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	53,235,869 - 53,267,895 (+)	NCBI		UU_Cfam_GSD_1.0

CERS4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	8,209,370 - 8,262,421 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	8,206,736 - 8,262,433 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	8,274,254 - 8,327,305 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	8,180,257 - 8,233,302 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	8,180,256 - 8,233,302	NCBI
Celera	19	8,145,624 - 8,198,703 (+)	NCBI		Celera
Cytogenetic Map	19	p13.2	NCBI
HuRef	19	7,944,374 - 7,996,205 (+)	NCBI		HuRef
CHM1_1	19	8,273,682 - 8,326,785 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	8,210,805 - 8,263,817 (+)	NCBI		T2T-CHM13v2.0

Cers4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	4,542,863 - 4,579,603 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	4,543,026 - 4,581,680 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	4,492,818 - 4,529,603 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	4,493,026 - 4,531,680 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	4,493,405 - 4,526,079 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	4,493,504 - 4,525,757 (+)	NCBI		MGSCv36	mm8
Celera	8	4,687,834 - 4,720,521 (+)	NCBI		Celera
Cytogenetic Map	8	A1.1	NCBI
cM Map	8	2.04	NCBI

Cers4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	7,649,610 - 7,688,066 (+)	NCBI		GRCr8
mRatBN7.2	12	2,851,784 - 2,890,244 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	2,851,784 - 2,886,828 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	3,499,944 - 3,534,889 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	4,123,536 - 4,158,481 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	2,887,342 - 2,922,582 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	4,439,750 - 4,474,759 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	4,439,750 - 4,474,729 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	6,568,235 - 6,602,867 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	1,256,396 - 1,291,578 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	1,257,772 - 1,290,757 (-)	NCBI
Celera	12	4,665,718 - 4,700,469 (+)	NCBI		Celera
Cytogenetic Map	12	p12	NCBI

Cers4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955563	1,100,787 - 1,124,258 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955563	1,100,410 - 1,105,662 (-)	NCBI	ChiLan1.0	ChiLan1.0

CERS4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	12,890,575 - 12,944,580 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	12,007,769 - 12,065,077 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	7,509,213 - 7,562,394 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	8,364,569 - 8,415,345 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	8,364,569 - 8,415,345 (+)	Ensembl	panpan1.1		panPan2

Cers4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	212,706,004 - 212,713,170 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	5,107,663 - 5,131,140 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	5,121,645 - 5,128,774 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CERS4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	71,004,420 - 71,048,248 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	71,004,418 - 71,047,968 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	71,405,245 - 71,448,503 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CERS4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666081	79,409 - 171,905 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cers4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	1,074,942 - 1,092,647 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	1,074,920 - 1,092,607 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CERS4
440 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005632949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038428813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038428814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038428815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038428816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038455537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038455539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038504442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038504443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038504444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038504445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038567488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038567489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038567490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038567491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038631636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038631637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038631638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038631639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_542126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000029355 ⟹ ENSCAFP00000027297

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	20	52,835,128 - 52,860,462 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000066099 ⟹ ENSCAFP00000066731

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	20	52,835,128 - 52,860,803 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000072817 ⟹ ENSCAFP00000054685

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	20	52,846,558 - 52,860,803 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000083545 ⟹ ENSCAFP00000047015

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	20	52,829,316 - 52,860,803 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845052493 ⟹ ENSCAFP00845041184

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	20	53,357,348 - 53,388,654 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845052512 ⟹ ENSCAFP00845041202

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	20	53,374,448 - 53,388,669 (+)	Ensembl

RefSeq Acc Id:

XM_005632949 ⟹ XP_005633006

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	20	52,837,190 - 52,860,462 (+)	NCBI
Dog10K_Boxer_Tasha	20	52,638,905 - 52,662,189 (+)	NCBI

Sequence:

show sequence

GACAGGGCTGTGGGAAGGACGGAGGGGAGGGCCCCCCAGTCCAGCCCAGGGACGCTGGGCAGGG
CTTCCTGGCGGACGAGTCTGAGAGCAGAGTCGTGAAGAAGCAGAAGGCATTTGGCAGGCAGCAA
GGAGGGCATTACTGGATGTGGTCCAGCCTCAACGAATGGTTCTGGCAGGACAGGTTCTGGCTCC
CACCCAACAACACGTGGGCTGTCCTGGAGGACCGGGATGGCCTGGTCTTTGCTCACCCCCGGGA
CTTGCTGGCAGCCCTGCCCCTGGCGCTGGCCCTGGTGGTCATGCGCTTCACCTTCGAGAGATTT
GTTGGCCTGCCCCTGAGCCGGTTGCTAGGTGTGCGAGATCAGGCCAGGAAGCCGGTGAAGCCCA
ATGCCACTCTGGAGAAATACTTCCTCACGAAAGGGTGGAAGCCCAAGGAGCCCCAGATGGCCCT
CCTCGCTGCCCAGTGCGGCCTGACGCTGCAGCAGACCCAGCGCTGGTTCCGGAGGCGCCGGAAT
CAGGACCGGCCCTGCCTGACCAAGAAGTTCTGTGAGGCCAGCTGGAGGTTTAGCTTCTACGCCT
GCGCCTTCTTTGGTGGCCTGTCGATCCTCTACCACGAGTCGTGGCTGTGGATGCCGGAAATGTG
CTGGGACAATTACCCGCTTCAGCCCCTGAAACCGGCCCTGTACTATTGGTACCTCCTGGAACTG
AGCTTCTACATCTCGCTGCTGATGACGCTGCCCTTTGATGTCAGGCGCAAGGACTTCAAGGAGC
AGGTGGCGCACCACTTCGTGACCATCATCCTGATCAGCTTCTCCTACAGCTCCAACCTGCTGCG
CATCGGCTCCCTGGTGCTGCTGCTGCACGACGCCTCCGACTACCTCCTGGAGGCCGGTAAGATG
TTCAATTACACGCCCTGGAGGAAGGTGTGCGACACCCTCTTCATCGTCTTCTCCTTGGTCTTCT
TCTATACTCGCCTCGTGCTCTTCCCTACGCGGATCCTCTACACCACGTACTACGACTCCATTGC
CCAGTGGGACACCTTCTTCGGCTACTACTTCTGCAACACTCTCCTGATGGCGCTGCAGCTGCTG
CACGTGTTCTGGTCTTGCCTCATCCTTCGCATGATCTACAGCTTCGTGAAGAAGGGCCGGATGG
AGAAGGATGTCCGCAGCGACGTGGAGGAGTCCGACTCGAGCGACGGCGAGGTGGCCCAGGAGCA
CCTGCTGCTGAAGAACGGCGCTGCTCACAGGCCCGGCGCGGCCCCCGCAGACGGTCCCCGGAGC
CGGCTGGTGGGGCGGGTGGCCAACGGGCACACTGCGACCACATAG

hide sequence

RefSeq Acc Id:

XM_038428813 ⟹ XP_038284741

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	20	53,357,371 - 53,388,350 (+)	NCBI

RefSeq Acc Id:

XM_038428814 ⟹ XP_038284742

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	20	53,356,973 - 53,388,350 (+)	NCBI

RefSeq Acc Id:

XM_038428815 ⟹ XP_038284743

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	20	53,365,072 - 53,388,350 (+)	NCBI

RefSeq Acc Id:

XM_038428816 ⟹ XP_038284744

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	20	53,356,351 - 53,388,350 (+)	NCBI

RefSeq Acc Id:

XM_038455537 ⟹ XP_038311465

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	20	52,630,806 - 52,662,189 (+)	NCBI

RefSeq Acc Id:

XM_038455539 ⟹ XP_038311467

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	20	52,630,184 - 52,662,189 (+)	NCBI

RefSeq Acc Id:

XM_038504442 ⟹ XP_038360370

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	20	52,560,192 - 52,591,152 (+)	NCBI

RefSeq Acc Id:

XM_038504443 ⟹ XP_038360371

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	20	52,559,794 - 52,591,152 (+)	NCBI

RefSeq Acc Id:

XM_038504444 ⟹ XP_038360372

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	20	52,567,881 - 52,591,152 (+)	NCBI

RefSeq Acc Id:

XM_038504445 ⟹ XP_038360373

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	20	52,559,172 - 52,591,152 (+)	NCBI

RefSeq Acc Id:

XM_038567488 ⟹ XP_038423416

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	20	53,236,889 - 53,267,895 (+)	NCBI

RefSeq Acc Id:

XM_038567489 ⟹ XP_038423417

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	20	53,236,491 - 53,267,895 (+)	NCBI

RefSeq Acc Id:

XM_038567490 ⟹ XP_038423418

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	20	53,244,592 - 53,267,895 (+)	NCBI

RefSeq Acc Id:

XM_038567491 ⟹ XP_038423419

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	20	53,235,869 - 53,267,895 (+)	NCBI

RefSeq Acc Id:

XM_038631636 ⟹ XP_038487564

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	20	53,005,381 - 53,036,367 (+)	NCBI

RefSeq Acc Id:

XM_038631637 ⟹ XP_038487565

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	20	53,004,985 - 53,036,367 (+)	NCBI

RefSeq Acc Id:

XM_038631638 ⟹ XP_038487566

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	20	53,013,082 - 53,036,367 (+)	NCBI

RefSeq Acc Id:

XM_038631639 ⟹ XP_038487567

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	20	53,004,363 - 53,036,367 (+)	NCBI

RefSeq Acc Id:

XM_542126 ⟹ XP_542126

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	20	52,829,482 - 52,860,783 (+)	NCBI
Dog10K_Boxer_Tasha	20	52,631,204 - 52,662,189 (+)	NCBI

Sequence:

show sequence

CCCGCGGGGCGCCACCGACGTGCGCGCGCCGGGATGCAGCGGGGCCCCGGCTGCGTAGACGGCT
GCGACCCGGTAAACAGCCTGCGGCCGCTCGGCCCGCGCTGGGTGCGGGAGGCCAGCGCCTCGGG
GAGATGGGGATGTGGTCCAGCCTCAACGAATGGTTCTGGCAGGACAGGTTCTGGCTCCCACCCA
ACAACACGTGGGCTGTCCTGGAGGACCGGGATGGCCTGGTCTTTGCTCACCCCCGGGACTTGCT
GGCAGCCCTGCCCCTGGCGCTGGCCCTGGTGGTCATGCGCTTCACCTTCGAGAGATTTGTTGGC
CTGCCCCTGAGCCGGTTGCTAGGTGTGCGAGATCAGGCCAGGAAGCCGGTGAAGCCCAATGCCA
CTCTGGAGAAATACTTCCTCACGAAAGGGTGGAAGCCCAAGGAGCCCCAGATGGCCCTCCTCGC
TGCCCAGTGCGGCCTGACGCTGCAGCAGACCCAGCGCTGGTTCCGGAGGCGCCGGAATCAGGAC
CGGCCCTGCCTGACCAAGAAGTTCTGTGAGGCCAGCTGGAGGTTTAGCTTCTACGCCTGCGCCT
TCTTTGGTGGCCTGTCGATCCTCTACCACGAGTCGTGGCTGTGGATGCCGGAAATGTGCTGGGA
CAATTACCCGCTTCAGCCCCTGAAACCGGCCCTGTACTATTGGTACCTCCTGGAACTGAGCTTC
TACATCTCGCTGCTGATGACGCTGCCCTTTGATGTCAGGCGCAAGGACTTCAAGGAGCAGGTGG
CGCACCACTTCGTGACCATCATCCTGATCAGCTTCTCCTACAGCTCCAACCTGCTGCGCATCGG
CTCCCTGGTGCTGCTGCTGCACGACGCCTCCGACTACCTCCTGGAGGCCGGTAAGATGTTCAAT
TACACGCCCTGGAGGAAGGTGTGCGACACCCTCTTCATCGTCTTCTCCTTGGTCTTCTTCTATA
CTCGCCTCGTGCTCTTCCCTACGCGGATCCTCTACACCACGTACTACGACTCCATTGCCCAGTG
GGACACCTTCTTCGGCTACTACTTCTGCAACACTCTCCTGATGGCGCTGCAGCTGCTGCACGTG
TTCTGGTCTTGCCTCATCCTTCGCATGATCTACAGCTTCGTGAAGAAGGGCCGGATGGAGAAGG
ATGTCCGCAGCGACGTGGAGGAGTCCGACTCGAGCGACGGCGAGGTGGCCCAGGAGCACCTGCT
GCTGAAGAACGGCGCTGCTCACAGGCCCGGCGCGGCCCCCGCAGACGGTCCCCGGAGCCGGCTG
GTGGGGCGGGTGGCCAACGGGCACACTGCGACCACATAGCCAGCCCAGGATGGCCTCGAGGGCC
TGCCCCTGTGCCCTGGGGCTTGGATTTGTGGGGCTGCTGGACTGGAGGCTCTGGAGATGGGGAC
AGCCCTCCCCCAGGGTCAGGAGGAGGGCGGATGATCTGTCTCCAGCCCCCTCAATGCCTTCCCT
CCCCTCCCCTCCCCCCTTCTCCCCTCCCCCCTTCTCCTCCTTCACTTCCCCTTGGGCACCTGGA
CAGAGCTCGGGAGGGTGGGCAGCAGGTCGACGCTGCAGCCCTCCAGAGCCACCTCCAGGCTGAA
AGGCGTCCAATAAAACTTGAACGGAGCCACATTCTCTTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005633006	(Get FASTA)	NCBI Sequence Viewer
	XP_038284741	(Get FASTA)	NCBI Sequence Viewer
	XP_038284742	(Get FASTA)	NCBI Sequence Viewer
	XP_038284743	(Get FASTA)	NCBI Sequence Viewer
	XP_038284744	(Get FASTA)	NCBI Sequence Viewer
	XP_038311465	(Get FASTA)	NCBI Sequence Viewer
	XP_038311467	(Get FASTA)	NCBI Sequence Viewer
	XP_038360370	(Get FASTA)	NCBI Sequence Viewer
	XP_038360371	(Get FASTA)	NCBI Sequence Viewer
	XP_038360372	(Get FASTA)	NCBI Sequence Viewer
	XP_038360373	(Get FASTA)	NCBI Sequence Viewer
	XP_038423416	(Get FASTA)	NCBI Sequence Viewer
	XP_038423417	(Get FASTA)	NCBI Sequence Viewer
	XP_038423418	(Get FASTA)	NCBI Sequence Viewer
	XP_038423419	(Get FASTA)	NCBI Sequence Viewer
	XP_038487564	(Get FASTA)	NCBI Sequence Viewer
	XP_038487565	(Get FASTA)	NCBI Sequence Viewer
	XP_038487566	(Get FASTA)	NCBI Sequence Viewer
	XP_038487567	(Get FASTA)	NCBI Sequence Viewer
	XP_542126	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000027297.3
	ENSCAFP00000047015.1
	ENSCAFP00000054685.1
	ENSCAFP00000066731.2
	ENSCAFP00030025241.1
	ENSCAFP00040034553.1
	ENSCAFP00040034649.1
	ENSCAFP00040034708.1
	ENSCAFP00040034753.1
	ENSCAFP00845041184
	ENSCAFP00845041184.1
	ENSCAFP00845041202
	ENSCAFP00845041202.1

RefSeq Acc Id:	XP_542126 ⟸ XM_542126
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I3S790 (UniProtKB/TrEMBL), A0A8P0SMA8 (UniProtKB/TrEMBL), A0A8C0TES1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGMWSSLNEWFWQDRFWLPPNNTWAVLEDRDGLVFAHPRDLLAALPLALALVVMRFTFERFVGL PLSRLLGVRDQARKPVKPNATLEKYFLTKGWKPKEPQMALLAAQCGLTLQQTQRWFRRRRNQDR PCLTKKFCEASWRFSFYACAFFGGLSILYHESWLWMPEMCWDNYPLQPLKPALYYWYLLELSFY ISLLMTLPFDVRRKDFKEQVAHHFVTIILISFSYSSNLLRIGSLVLLLHDASDYLLEAGKMFNY TPWRKVCDTLFIVFSLVFFYTRLVLFPTRILYTTYYDSIAQWDTFFGYYFCNTLLMALQLLHVF WSCLILRMIYSFVKKGRMEKDVRSDVEESDSSDGEVAQEHLLLKNGAAHRPGAAPADGPRSRLV GRVANGHTATT hide sequence

RefSeq Acc Id:	XP_005633006 ⟸ XM_005632949
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0LCY3 (UniProtKB/TrEMBL), A0A8C0TES1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWSSLNEWFWQDRFWLPPNNTWAVLEDRDGLVFAHPRDLLAALPLALALVVMRFTFERFVGLPL SRLLGVRDQARKPVKPNATLEKYFLTKGWKPKEPQMALLAAQCGLTLQQTQRWFRRRRNQDRPC LTKKFCEASWRFSFYACAFFGGLSILYHESWLWMPEMCWDNYPLQPLKPALYYWYLLELSFYIS LLMTLPFDVRRKDFKEQVAHHFVTIILISFSYSSNLLRIGSLVLLLHDASDYLLEAGKMFNYTP WRKVCDTLFIVFSLVFFYTRLVLFPTRILYTTYYDSIAQWDTFFGYYFCNTLLMALQLLHVFWS CLILRMIYSFVKKGRMEKDVRSDVEESDSSDGEVAQEHLLLKNGAAHRPGAAPADGPRSRLVGR VANGHTATT hide sequence

Ensembl Acc Id:

ENSCAFP00000027297 ⟸ ENSCAFT00000029355

Ensembl Acc Id:

ENSCAFP00000047015 ⟸ ENSCAFT00000083545

Ensembl Acc Id:

ENSCAFP00000054685 ⟸ ENSCAFT00000072817

Ensembl Acc Id:

ENSCAFP00000066731 ⟸ ENSCAFT00000066099

RefSeq Acc Id:	XP_038360373 ⟸ XM_038504445
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038360371 ⟸ XM_038504443
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038360370 ⟸ XM_038504442
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038360372 ⟸ XM_038504444
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038487567 ⟸ XM_038631639
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038487565 ⟸ XM_038631637
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038487564 ⟸ XM_038631636
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038487566 ⟸ XM_038631638
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038284744 ⟸ XM_038428816
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0LCY3 (UniProtKB/TrEMBL), A0A8C0TES1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038284742 ⟸ XM_038428814
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0LCY3 (UniProtKB/TrEMBL), A0A8C0TES1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038284741 ⟸ XM_038428813
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I3S790 (UniProtKB/TrEMBL), A0A8P0SMA8 (UniProtKB/TrEMBL), A0A8C0TES1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038284743 ⟸ XM_038428815
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0LCY3 (UniProtKB/TrEMBL), A0A8C0TES1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038311467 ⟸ XM_038455539
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0LCY3 (UniProtKB/TrEMBL), A0A8C0TES1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038311465 ⟸ XM_038455537
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0LCY3 (UniProtKB/TrEMBL), A0A8C0TES1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038423419 ⟸ XM_038567491
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0LCY3 (UniProtKB/TrEMBL), A0A8C0TES1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038423417 ⟸ XM_038567489
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0LCY3 (UniProtKB/TrEMBL), A0A8C0TES1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038423416 ⟸ XM_038567488
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0TES1 (UniProtKB/TrEMBL), A0A8I3S790 (UniProtKB/TrEMBL), A0A8P0SMA8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038423418 ⟸ XM_038567490
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0LCY3 (UniProtKB/TrEMBL), A0A8C0TES1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845041202 ⟸ ENSCAFT00845052512

Ensembl Acc Id:

ENSCAFP00845041184 ⟸ ENSCAFT00845052493

Protein Domains

Homeobox TLC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000018482	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030015561	UniProtKB/TrEMBL
	ENSCAFG00040021338	UniProtKB/TrEMBL
	ENSCAFG00845029643	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000029355.4	UniProtKB/TrEMBL
	ENSCAFT00000066099.2	UniProtKB/TrEMBL
	ENSCAFT00000072817.2	UniProtKB/TrEMBL
	ENSCAFT00000083545.2	UniProtKB/TrEMBL
	ENSCAFT00030028953.1	UniProtKB/TrEMBL
	ENSCAFT00040039601.1	UniProtKB/TrEMBL
	ENSCAFT00040039709.1	UniProtKB/TrEMBL
	ENSCAFT00040039776.1	UniProtKB/TrEMBL
	ENSCAFT00040039824.1	UniProtKB/TrEMBL
	ENSCAFT00845052493	ENTREZGENE
	ENSCAFT00845052493.1	UniProtKB/TrEMBL
	ENSCAFT00845052512	ENTREZGENE
	ENSCAFT00845052512.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	Lag1/Lac1-like	UniProtKB/TrEMBL
	TLC-dom	UniProtKB/TrEMBL
NCBI Gene	CERS4	ENTREZGENE
PANTHER	CERAMIDE SYNTHASE 4	UniProtKB/TrEMBL
	PTHR12560	UniProtKB/TrEMBL
Pfam	Homeodomain	UniProtKB/TrEMBL
	TRAM_LAG1_CLN8	UniProtKB/TrEMBL
PIRSF	LAG1_LAC1	UniProtKB/TrEMBL
PROSITE	HOMEOBOX_2	UniProtKB/TrEMBL
	TLC	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
	TLC	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	A0A8C0LCY3	ENTREZGENE
	A0A8C0NG74_CANLF	UniProtKB/TrEMBL
	A0A8C0TB77_CANLF	UniProtKB/TrEMBL
	A0A8C0TES1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0Z3R5_CANLF	UniProtKB/TrEMBL
	A0A8I3Q3U3_CANLF	UniProtKB/TrEMBL
	A0A8I3S790	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0SMA8	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A8P0NX50	UniProtKB/TrEMBL
	A0A8P0PF99	UniProtKB/TrEMBL
	A0A8P0T6Y3	UniProtKB/TrEMBL
VGNC ID	VGNC:39150	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar