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Gene: VSX2 (visual system homeobox 2) Canis lupus familiaris

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Symbol:

VSX2

Name:

visual system homeobox 2

RGD ID:

12359528

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); DNA-binding transcription repressor activity, RNA polymerase II-specific (inferred); INVOLVED IN camera-type eye development (inferred); cell fate commitment (inferred); cell population proliferation (inferred); ASSOCIATED WITH Anophthalmia (ortholog); blindness (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ceh-10 homeodomain containing homolog; CHX10

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	VSX2 (visual system homeobox 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, PhylomeDB, Treefam
Mus musculus (house mouse):	Vsx2 (visual system homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Vsx2 (visual system homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Vsx2 (visual system homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	VSX2 (visual system homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Vsx2 (visual system homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	VSX2 (visual system homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	VSX2 (visual system homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Vsx2 (visual system homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	47,455,337 - 47,473,786 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	47,455,340 - 47,473,684 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	47,140,385 - 47,158,661 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	47,682,709 - 47,700,996 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	47,682,709 - 47,700,979 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	47,351,896 - 47,370,154 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	47,373,742 - 47,392,004 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	47,760,454 - 47,778,742 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
VSX2	Dog	blindness	susceptibility	ISO	VSX2 (Homo sapiens)	9068941	microphthalmia more ...	RGD	PMID:10932181 and REF_RGD_ID:734779

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
VSX2	Dog	Anophthalmia		ISO	VSX2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Anophthalmia	ClinVar	PMID:15257456 more ...
VSX2	Dog	genetic disease		ISO	VSX2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:28492532
VSX2	Dog	intellectual disability		ISO	VSX2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Intellectual disability and mild	ClinVar
VSX2	Dog	isolated microphthalmia 2		ISO	VSX2 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:10932181 more ...
VSX2	Dog	isolated microphthalmia 6		ISO	VSX2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: MICROPHTHALMIA and POSTERIOR NONSYNDROMIC	ClinVar	PMID:25741868
VSX2	Dog	Isolated Microphthalmia with Coloboma 3		ISO	VSX2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Microphthalmia more ...	ClinVar	PMID:10932181 more ...
VSX2	Dog	microphthalmia		ISO	VSX2 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:15257456 more ...
VSX2	Dog	Microphthalmia, Cataracts, and Iris Abnormalities		ISO	VSX2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Microphthalmia more ...	ClinVar	PMID:10932181 more ...
VSX2	Dog	primary ciliary dyskinesia 16		ISO	VSX2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Primary ciliary dyskinesia 16	ClinVar	PMID:28492532
VSX2	Dog	retinitis pigmentosa		ISO	VSX2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Retinitis pigmentosa	ClinVar
VSX2	Dog	syndromic microphthalmia 5		ISO	VSX2 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Anophthalmia-microphthalmia syndrome	ClinVar	PMID:20414678 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
VSX2	Dog	isolated microphthalmia 2		ISO	VSX2 (Homo sapiens)	7240710		OMIM
VSX2	Dog	Isolated Microphthalmia with Coloboma 3		ISO	VSX2 (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
VSX2	Dog	camera-type eye development	acts_upstream_of_or_within	IEA	UniProtKB:Q61412 and ensembl:ENSMUSP00000021665	150520179		Ensembl	GO_REF:0000107
VSX2	Dog	cell fate commitment	acts_upstream_of_or_within	IEA	UniProtKB:Q61412 and ensembl:ENSMUSP00000021665	150520179		Ensembl	GO_REF:0000107
VSX2	Dog	cell population proliferation	acts_upstream_of	IEA	UniProtKB:Q61412 and ensembl:ENSMUSP00000021665	150520179		Ensembl	GO_REF:0000107
VSX2	Dog	central nervous system neuron differentiation	acts_upstream_of_or_within	IEA	UniProtKB:Q61412 and ensembl:ENSMUSP00000021665	150520179		Ensembl	GO_REF:0000107
VSX2	Dog	negative regulation of neuroblast proliferation	acts_upstream_of_or_within	IEA	UniProtKB:Q61412 and ensembl:ENSMUSP00000021665	150520179		Ensembl	GO_REF:0000107
VSX2	Dog	negative regulation of transcription by RNA polymerase II	involved_in	IEA	UniProtKB:P58304 and ensembl:ENSP00000261980	150520179		Ensembl	GO_REF:0000107
VSX2	Dog	neuroblast proliferation	acts_upstream_of	IEA	UniProtKB:Q61412 and ensembl:ENSMUSP00000021665	150520179		Ensembl	GO_REF:0000107
VSX2	Dog	positive regulation of cell population proliferation	acts_upstream_of_or_within	IEA	UniProtKB:Q61412 and ensembl:ENSMUSP00000021665	150520179		Ensembl	GO_REF:0000107
VSX2	Dog	positive regulation of transcription by RNA polymerase II	acts_upstream_of_or_within	IEA	UniProtKB:Q61412 and ensembl:ENSMUSP00000021665	150520179		Ensembl	GO_REF:0000107
VSX2	Dog	regulation of DNA-templated transcription	involved_in	IEA	InterPro:IPR017970	150520179		InterPro	GO_REF:0000002
VSX2	Dog	regulation of transcription by RNA polymerase II	involved_in	IBA	MGI:88401 more ...	150520179		GO_Central	GO_REF:0000033
VSX2	Dog	retina morphogenesis in camera-type eye	acts_upstream_of_or_within	IEA	UniProtKB:Q61412 and ensembl:ENSMUSP00000021665	150520179		Ensembl	GO_REF:0000107
VSX2	Dog	retinal bipolar neuron differentiation	acts_upstream_of_or_within	IEA	UniProtKB:Q61412 and ensembl:ENSMUSP00000021665	150520179		Ensembl	GO_REF:0000107
VSX2	Dog	visual perception	involved_in	IEA	UniProtKB-KW:KW-0844	150520179		UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
VSX2	Dog	cytoplasm	located_in	IEA	UniProtKB:Q61412 and ensembl:ENSMUSP00000021665	150520179		Ensembl	GO_REF:0000107
VSX2	Dog	nucleus	located_in	IEA	UniRule:UR000401037	150520179		UniProt	GO_REF:0000104
VSX2	Dog	nucleus	is_active_in	IBA	FB:FBgn0263511 more ...	150520179		GO_Central	GO_REF:0000033
VSX2	Dog	nucleus	located_in	IEA	UniProtKB:Q61412 and ensembl:ENSMUSP00000021665	150520179		Ensembl	GO_REF:0000107
VSX2	Dog	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	150520179		UniProt	GO_REF:0000044
VSX2	Dog	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
VSX2	Dog	DNA binding	enables	IEA	UniRule:UR000401037	150520179		UniProt	GO_REF:0000104
VSX2	Dog	DNA binding	enables	IEA	InterPro:IPR001356	150520179		InterPro	GO_REF:0000002
VSX2	Dog	DNA binding	enables	IEA	UniProtKB-KW:KW-0238 and UniProtKB-KW:KW-0371	150520179		UniProt	GO_REF:0000043
VSX2	Dog	DNA-binding transcription factor activity, RNA polymerase II-specific	enables	IEA	InterPro:IPR017970	150520179		InterPro	GO_REF:0000002
VSX2	Dog	DNA-binding transcription repressor activity, RNA polymerase II-specific	enables	IEA	UniProtKB:P58304 and ensembl:ENSP00000261980	150520179		Ensembl	GO_REF:0000107
VSX2	Dog	protein binding	enables	ISO	UniProtKB:A0A6Q8PF08 more ...	9068941	PMID:32814053	IntAct	PMID:32814053
VSX2	Dog	protein binding	enables	ISO	UniProtKB:P13405 and UniProtKB:Q08999	9068941	PMID:9464541	IntAct	PMID:9464541
VSX2	Dog	protein binding	enables	ISO	PR:Q6P5F9	9068941	PMID:15767664	MGI	PMID:15767664
VSX2	Dog	RNA polymerase II transcription regulatory region sequence-specific DNA binding	enables	IEA	UniProtKB:P58304 and ensembl:ENSP00000261980	150520179		Ensembl	GO_REF:0000107
VSX2	Dog	sequence-specific double-stranded DNA binding	enables	IEA	UniProtKB:P58304 and ensembl:ENSP00000261980	150520179		Ensembl	GO_REF:0000107
VSX2	Dog	sequence-specific double-stranded DNA binding	enables	IBA	PANTHER:PTN000676430 and UniProtKB:P58304	150520179		GO_Central	GO_REF:0000033

PMID:22301074	PMID:30032202

VSX2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	47,455,337 - 47,473,786 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	47,455,340 - 47,473,684 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	47,140,385 - 47,158,661 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	47,682,709 - 47,700,996 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	47,682,709 - 47,700,979 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	47,351,896 - 47,370,154 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	47,373,742 - 47,392,004 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	47,760,454 - 47,778,742 (+)	NCBI		UU_Cfam_GSD_1.0

VSX2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	74,239,449 - 74,262,738 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	74,239,449 - 74,262,738 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	74,706,152 - 74,729,441 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	73,775,928 - 73,799,194 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	73,775,927 - 73,799,193	NCBI
Celera	14	54,743,463 - 54,766,749 (+)	NCBI		Celera
Cytogenetic Map	14	q24.3	NCBI
HuRef	14	54,873,146 - 54,896,407 (+)	NCBI		HuRef
CHM1_1	14	74,645,738 - 74,668,970 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	68,447,256 - 68,470,582 (+)	NCBI		T2T-CHM13v2.0

Vsx2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	84,616,602 - 84,642,231 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	84,616,536 - 84,642,231 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	84,569,828 - 84,595,457 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	84,569,762 - 84,595,457 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	85,910,802 - 85,936,407 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	85,459,600 - 85,485,205 (+)	NCBI		MGSCv36	mm8
Celera	12	86,025,411 - 86,051,063 (+)	NCBI		Celera
Cytogenetic Map	12	D1	NCBI
cM Map	12	39.28	NCBI

Vsx2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	109,932,943 - 109,972,005 (+)	NCBI		GRCr8
mRatBN7.2	6	104,214,842 - 104,240,264 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	104,217,230 - 104,240,018 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	104,379,571 - 104,402,356 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	104,678,655 - 104,701,440 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	104,048,242 - 104,071,028 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	108,285,031 - 108,308,588 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	108,285,822 - 108,308,587 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	117,237,657 - 117,260,423 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	108,638,063 - 108,660,830 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	108,647,664 - 108,647,779 (+)	NCBI
Celera	6	102,045,137 - 102,067,982 (+)	NCBI		Celera
Cytogenetic Map	6	q31	NCBI

Vsx2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955523	1,193,686 - 1,210,641 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955523	1,192,035 - 1,207,949 (-)	NCBI	ChiLan1.0	ChiLan1.0

VSX2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	75,328,455 - 75,349,803 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	74,544,961 - 74,566,309 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	54,797,734 - 54,821,081 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	73,651,133 - 73,672,666 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

Vsx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	28,561,166 - 28,581,265 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	3,487,702 - 3,508,191 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	3,487,718 - 3,507,802 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VSX2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	97,531,860 - 97,552,033 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	97,532,021 - 97,551,072 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	103,375,425 - 103,394,310 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VSX2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	51,446,781 - 51,471,156 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	51,447,714 - 51,469,345 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	39,680,858 - 39,704,250 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vsx2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	27,344,221 - 27,363,372 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	27,342,668 - 27,363,372 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in VSX2
261 total Variants

Assembly: CanFam3.1

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
8	47455629	47455630	T	C	snv	Sloughi (SG006), Sloughi (SG008)	View more Information
8	47471860	47471861	C	G	snv	Elo (EL565), Curly Coated Retriever (CR039), Norwich Terrier (NW206)	View more Information

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
3	4	1	20	12	6	1	4	1	5	14	9	12	14	5


RefSeq Transcripts	XM_014116059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038484470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038484471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038544045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038544046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038599250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038608170	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038672969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038672970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_547902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000026767 ⟹ ENSCAFP00000024870

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	8	47,455,340 - 47,473,684 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845025278 ⟹ ENSCAFP00845019887

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	8	47,682,709 - 47,700,979 (+)	Ensembl

RefSeq Acc Id:

XM_038484470 ⟹ XP_038340398

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	8	47,351,896 - 47,370,154 (+)	NCBI

RefSeq Acc Id:

XM_038484471 ⟹ XP_038340399

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	8	47,363,932 - 47,370,154 (+)	NCBI

RefSeq Acc Id:

XM_038544045 ⟹ XP_038399973

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	8	47,760,454 - 47,778,742 (+)	NCBI

RefSeq Acc Id:

XM_038544046 ⟹ XP_038399974

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	8	47,772,516 - 47,778,742 (+)	NCBI

RefSeq Acc Id:

XM_038599250 ⟹ XP_038455178

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	8	47,152,426 - 47,158,661 (+)	NCBI

RefSeq Acc Id:

XM_038608170 ⟹ XP_038464098

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	8	47,373,742 - 47,392,004 (+)	NCBI

RefSeq Acc Id:

XM_038672969 ⟹ XP_038528897

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	8	47,682,709 - 47,700,996 (+)	NCBI

RefSeq Acc Id:

XM_038672970 ⟹ XP_038528898

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	8	47,694,772 - 47,700,996 (+)	NCBI

RefSeq Acc Id:

XM_547902 ⟹ XP_547902

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	8	47,455,337 - 47,473,784 (+)	NCBI
Dog10K_Boxer_Tasha	8	47,140,385 - 47,158,661 (+)	NCBI

Sequence:

show sequence

GCACCTGGGACCAACTTCGGGAAGCGGGGAGCCCGGCGGGGGGGTGGGGGGAGCAAAAGACCTGCGGCCTCAGCCCCTCCAAAGAGCCGGGAGATGACGGGGAAAGCGGGGGAAGCGCTGAGCAAGCC
CAAATCCGAGACAGTGGCCAAGAGTACCTCGGGGGGCGCCCCGGCCAGGTGCACTGGGTTCGGCATCCAGGAGATCCTGGGTTTGAACAAGGAGCCCCCCAGCTCCCACCCGCGGGCTGCCCTCGACG
GCCTGGCCCCCGGGCACCTGCTGGCGGCGCGCTCGGTGCTCAGCCCCGCGGGAGTGGGCGGCATGGGGCTGCTGGGGCCCGGGGGGCTCCCCGGCTTCTACGCGCAGCCCACCTTCCTGGAAGTGCTG
TCCGACCCGCAGAGCGTCCACTTGCAGCCGCTGGGCAGAGCGTCGGGGCCGCTGGACACCAGCCAGACGGCCAGCTCGGATTCTGAAGATGTTTCCTCCAGCGACCGAAAAATGTCCAAATCGGCTTT
AAACCAGACCAAGAAACGGAAGAAGCGGCGACACAGGACAATCTTTACTTCCTACCAGCTAGAGGAGCTGGAGAAGGCATTCAATGAGGCCCACTACCCAGATGTCTATGCCCGGGAGATGCTGGCCA
TGAAAACGGAGCTGCCTGAAGACAGGATACAGGTCTGGTTCCAGAACCGTAGAGCCAAGTGGAGGAAACGGGAGAAGTGCTGGGGCCGGAGCAGCGTCATGGCGGAGTACGGGCTCTACGGGGCCATG
GTGCGGCACTCTATCCCCCTGCCAGAGTCCATCCTCAAGTCCGCCAAGGATGGCATCATGGACTCCTGTGCCCCGTGGCTGCTGGGGATGCACAAAAAGTCGCTGGAGGCAGCAGCGGAGTCGGGGAG
GAAGGCCGAGGTGGAGCGCCAGGCCCTGCCCAAACTCGACAAGATGGAGCCGGAGGAGCGGGGCCCCGACCCTCCAGCGGCCATGTCCCAGGAGGAACTGAGAGAGAACAGCATTGCGGCGCTCCGAG
CCAGAGCTCAGGAGCACAGCACCAAAGTGCTGGGGACTGTGTCCGGGCCCGACAGCCTGGCCCGGAATGCCGAGGAGCCGGAGGAGGAGGAGGCCATGGACGAAGACAGGCCAGCGGAAAAGCTGAGT
CCACCGCAGCTTGAGGACATGGCTTAGGTCAGGGGCACGCAGACACCGAGCTCCCAGGACTCGCCTCGGGCCTGTGGTGTTGGGAGGTGTTCTCTGAGGCAGGGCTGGGGCCGGGCCTGGCCTCTGCC
TCGCTCCCCCGCGCCCCGGGCCCTCCACGCCCCCCGGGGCTGACTTCAGCACAACTCAGCTCTGGCAGAGGTTTGGGGCCGCGCTGAGACACCCCATCTAGTCTTGACCTCTCCAGCATCCTCCTCAT
CCCAAGGCCCTGCCTCAGCAGCTTTCTTGTCGTCCTAAACCACCCCTCATGCCACTTTCACTCAAGCCCTTGGCGCCTCTCACTGTCCACATCTGCCCCTTGCTCTCTGTTCTCTTGCTTGAAAGAGC
CTCCCCTCCCCAGCTCTACGCACACACCCCCCCCCCGCCCCCATGGCTTCTGCTCTGCCCAGACCCAAAGCCCACAGCTGCAAACTGGCAGGGACTGCGGATTTGCACTCTAGTACCAGTGTCCTGAG
TACCCCCCCCCAGTCTTCAGCAAAACTGTGCGCCCCCCACCCAGCCTGTTCCTTCCCGAGGGCCTGGGTCTGGGTCTCCACAGGGTGGATAAACTGCCCTGCAGGCCCAGGCACAACCTCTGCTCCAC
CCCATCGACAGGGCTCAGATTCCAGGTAAACTTGGAAGGTGTCATCCTGAGCCCCTCGGCCTCCCTCCATTTCATGCCTTCCATGGTCACCCTCAGGAACCTGCCTACCCTACCTTCCCCCCCAGTAT
GGGTGCCAGCACCGCCATGTACAGTACCTGTAGAGTCCAGGGCCTGTGCCCTGCAGCCAGAGGGCACCTGTCACAAATGCTGTGGTCATGGCATTGCTGGGGAGGCCAAACTCTTACCCAGAGCCCTT
GGGCCTGCATTCTGAAGCATCCTGCCCGCCCCCTACCCCTGGATATGCTACCTGTGACCCTGATCTGCTATGCAAGACACCCTTCTAGAGCTTCTTGCAGTTTATCGATGTGCATGTGTCCTGCCTTG
GAGCAACCCAATCCAGCTGTAAAATGAATGAATAGGAAGCCACAGATCTTGACTCAACTTGATCCAGGCCATCCCTGGGAGGCCAAGCCTGGAGTGGGCCTGGGGCTATTATAGGCATCAAGGAGTGG
TCACAAGAAGGGCACAAGAAAGGACTCAAAGGAGAGCAAGGCAGAAGCCAGAGTTAGACCCAAACTAAGCAACTGGCACACACACCTGGCAGGTGTATGCTGTGGCATCTGCCCACTAGAATAGGATG
GACACAGTGACCGTGTAGGCATAGGGGACTGGGGGCTTCTTCCTGTCTGCTGATGGGAGGCACTGTCCACCGGGTGGCCTCTCTGCAGCTGCCCCTGCCACCCCCAGGCCAGGCATATGTCTCCCTCA
CCCCCTTGACGTTTCCCTCTACCATCCCTCCCACCTTTGCAGGGAATACCTCGCAAGAGAAAGGCCTGAGACAGTGAGTTTGGATTTTAATTCTGTATCAAAAGTTGATTTCTTCCTCATTCTGTTCA
CGGAATTCCCCGCCCCCTTCTTGTCTCTGTCTCCTTTGGTTTGAAGTGTTAGGCTGTAGCCCCCAGTGTGTAAATATGTACATAGAGTGGGAAGAAAGAGACTTGATATTGAGGTGTTTGAAATATGG
AACTGTAATAACTTCTAGGTATTCTAAACCTGTGATTTCTGTGCCATTTTCTGTAAAGATACAAGTGAGAATAAAATTGATGTACAAACATCAGGGGAGGGATCCAAGAATCCTCCGTGGGTGAGGAT
GGTGTATGTATGGGTAGCATAAAAAGTAAACCCATGGAGATGTTTTTAAGTCAAAATGACCAGAT

hide sequence


Protein RefSeqs	XP_038340398	(Get FASTA)	NCBI Sequence Viewer
	XP_038340399	(Get FASTA)	NCBI Sequence Viewer
	XP_038399973	(Get FASTA)	NCBI Sequence Viewer
	XP_038399974	(Get FASTA)	NCBI Sequence Viewer
	XP_038455178	(Get FASTA)	NCBI Sequence Viewer
	XP_038464098	(Get FASTA)	NCBI Sequence Viewer
	XP_038528897	(Get FASTA)	NCBI Sequence Viewer
	XP_038528898	(Get FASTA)	NCBI Sequence Viewer
	XP_547902	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000024870.2
	ENSCAFP00030034176.1
	ENSCAFP00040017459.1
	ENSCAFP00845019887
	ENSCAFP00845019887.1

RefSeq Acc Id:	XP_547902 ⟸ XM_547902
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0S8C2 (UniProtKB/TrEMBL), A0A8I3NIJ9 (UniProtKB/TrEMBL), A0A8C0JQS3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTGKAGEALSKPKSETVAKSTSGGAPARCTGFGIQEILGLNKEPPSSHPRAALDGLAPGHLLAARSVLSPAGVGGMGLLGPGGLPGFYAQPTFLEVLSDPQSVHLQPLGRASGPLDTSQTASSDSEDV SSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEYGLYGAMVRHSIPLPESILKSAKDGIMDSCAPWLLGMH KKSLEAAAESGRKAEVERQALPKLDKMEPEERGPDPPAAMSQEELRENSIAALRARAQEHSTKVLGTVSGPDSLARNAEEPEEEEAMDEDRPAEKLSPPQLEDMA hide sequence

Ensembl Acc Id:

ENSCAFP00000024870 ⟸ ENSCAFT00000026767

RefSeq Acc Id:	XP_038340398 ⟸ XM_038484470
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038340399 ⟸ XM_038484471
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038464098 ⟸ XM_038608170
- Peptide Label:	isoform X2

Protein Domains

CVC Homeobox OAR

RGD ID:

13684277

Promoter ID:

EPDNEW_C2346

Type:

multiple initiation site

Name:

VSX2_1

Description:

visual system homeobox 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	8	47,468,205 - 47,468,265	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000016913	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030021365	UniProtKB/TrEMBL
	ENSCAFG00040010906	UniProtKB/TrEMBL
	ENSCAFG00845014112	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000026767.5	UniProtKB/TrEMBL
	ENSCAFT00030039184.1	UniProtKB/TrEMBL
	ENSCAFT00040020129.1	UniProtKB/TrEMBL
	ENSCAFT00845025278	ENTREZGENE
	ENSCAFT00845025278.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	CVC	UniProtKB/TrEMBL
	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	OAR_dom	UniProtKB/TrEMBL
	VSX_homeobox_regulators	UniProtKB/TrEMBL
NCBI Gene	VSX2	ENTREZGENE
PANTHER	VISUAL SYSTEM HOMEOBOX 2	UniProtKB/TrEMBL
	VISUAL SYSTEM HOMEOBOX 2	UniProtKB/TrEMBL
Pfam	Homeodomain	UniProtKB/TrEMBL
	OAR	UniProtKB/TrEMBL
PROSITE	CVC	UniProtKB/TrEMBL
	HOMEOBOX_1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
	OAR	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	A0A8C0JQS3	ENTREZGENE
	A0A8C0S8C2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NIJ9	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:48313	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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