VSX2 (visual system homeobox 2) - Rat Genome Database

Name: VSX2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: VSX2 (visual system homeobox 2) Canis lupus familiaris

Analyze

Symbol:

VSX2

Name:

visual system homeobox 2

RGD ID:

12359528

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); DNA-binding transcription repressor activity, RNA polymerase II-specific (inferred); INVOLVED IN camera-type eye development (ortholog); cell fate commitment (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH Anophthalmia (ortholog); blindness (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ceh-10 homeodomain containing homolog; CHX10

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	VSX2 (visual system homeobox 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, PhylomeDB, Treefam
Mus musculus (house mouse):	Vsx2 (visual system homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Vsx2 (visual system homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Vsx2 (visual system homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	VSX2 (visual system homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Vsx2 (visual system homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	VSX2 (visual system homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	VSX2 (visual system homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Vsx2 (visual system homeobox 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	47,455,337 - 47,473,786 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	47,455,340 - 47,473,684 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	47,140,385 - 47,158,661 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	47,682,709 - 47,700,996 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	47,682,709 - 47,700,979 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	47,351,896 - 47,370,154 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	47,373,742 - 47,392,004 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	47,760,454 - 47,778,742 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Anophthalmia (ISO)

blindness (ISO)

genetic disease (ISO)

intellectual disability (ISO)

isolated microphthalmia 2 (ISO)

isolated microphthalmia 6 (ISO)

Isolated Microphthalmia with Coloboma 3 (ISO)

microphthalmia (ISO)

Microphthalmia, Cataracts, and Iris Abnormalities (ISO)

primary ciliary dyskinesia 16 (ISO)

retinitis pigmentosa (ISO)

syndromic microphthalmia 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

camera-type eye development (ISO)

cell fate commitment (ISO)

cell population proliferation (ISO)

negative regulation of neuroblast proliferation (ISO)

negative regulation of transcription by RNA polymerase II (IEA)

neuroblast proliferation (ISO)

positive regulation of cell population proliferation (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of DNA-templated transcription (IEA)

retina morphogenesis in camera-type eye (ISO)

retinal bipolar neuron differentiation (ISO)

visual perception (IEA)

Cellular Component

cytoplasm (ISO)

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

DNA-binding transcription repressor activity, RNA polymerase II-specific (IEA)

protein binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

VSX2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	47,455,337 - 47,473,786 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	47,455,340 - 47,473,684 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	47,140,385 - 47,158,661 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	47,682,709 - 47,700,996 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	47,682,709 - 47,700,979 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	47,351,896 - 47,370,154 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	47,373,742 - 47,392,004 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	47,760,454 - 47,778,742 (+)	NCBI		UU_Cfam_GSD_1.0

VSX2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	74,239,449 - 74,262,738 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	74,239,449 - 74,262,738 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	74,706,152 - 74,729,441 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	73,775,928 - 73,799,194 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	73,775,927 - 73,799,193	NCBI
Celera	14	54,743,463 - 54,766,749 (+)	NCBI		Celera
Cytogenetic Map	14	q24.3	NCBI
HuRef	14	54,873,146 - 54,896,407 (+)	NCBI		HuRef
CHM1_1	14	74,645,738 - 74,668,970 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	68,447,256 - 68,470,582 (+)	NCBI		T2T-CHM13v2.0

Vsx2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	84,616,602 - 84,642,231 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	84,616,536 - 84,642,231 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	84,569,828 - 84,595,457 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	84,569,762 - 84,595,457 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	85,910,802 - 85,936,407 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	85,459,600 - 85,485,205 (+)	NCBI		MGSCv36	mm8
Celera	12	86,025,411 - 86,051,063 (+)	NCBI		Celera
Cytogenetic Map	12	D1	NCBI
cM Map	12	39.28	NCBI

Vsx2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	109,932,943 - 109,972,005 (+)	NCBI		GRCr8
mRatBN7.2	6	104,214,842 - 104,240,264 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	104,217,230 - 104,240,018 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	104,379,571 - 104,402,356 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	104,678,655 - 104,701,440 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	104,048,242 - 104,071,028 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	108,285,031 - 108,308,588 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	108,285,822 - 108,308,587 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	117,237,657 - 117,260,423 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	108,638,063 - 108,660,830 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	108,647,664 - 108,647,779 (+)	NCBI
Celera	6	102,045,137 - 102,067,982 (+)	NCBI		Celera
Cytogenetic Map	6	q31	NCBI

Vsx2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955523	1,193,686 - 1,210,641 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955523	1,192,035 - 1,207,949 (-)	NCBI	ChiLan1.0	ChiLan1.0

VSX2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	75,328,455 - 75,349,803 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	74,544,961 - 74,566,309 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	54,797,734 - 54,821,081 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	73,651,133 - 73,672,666 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

Vsx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	28,561,166 - 28,581,265 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	3,487,702 - 3,508,191 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	3,487,718 - 3,507,802 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VSX2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	97,531,860 - 97,552,033 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	97,532,021 - 97,551,072 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	103,375,425 - 103,394,310 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VSX2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	51,446,781 - 51,471,156 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	51,447,714 - 51,469,345 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	39,680,858 - 39,704,250 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vsx2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	27,344,221 - 27,363,372 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	27,342,668 - 27,363,372 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in VSX2
261 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
3	4	1	20	12	6	1	4	1	5	14	9	12	14	5

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_014116059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038484470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038484471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038544045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038544046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038599250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038608170	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038672969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038672970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_547902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000026767 ⟹ ENSCAFP00000024870

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	8	47,455,340 - 47,473,684 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845025278 ⟹ ENSCAFP00845019887

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	8	47,682,709 - 47,700,979 (+)	Ensembl

RefSeq Acc Id:

XM_038484470 ⟹ XP_038340398

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	8	47,351,896 - 47,370,154 (+)	NCBI

RefSeq Acc Id:

XM_038484471 ⟹ XP_038340399

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	8	47,363,932 - 47,370,154 (+)	NCBI

RefSeq Acc Id:

XM_038544045 ⟹ XP_038399973

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	8	47,760,454 - 47,778,742 (+)	NCBI

RefSeq Acc Id:

XM_038544046 ⟹ XP_038399974

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	8	47,772,516 - 47,778,742 (+)	NCBI

RefSeq Acc Id:

XM_038599250 ⟹ XP_038455178

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	8	47,152,426 - 47,158,661 (+)	NCBI

RefSeq Acc Id:

XM_038608170 ⟹ XP_038464098

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	8	47,373,742 - 47,392,004 (+)	NCBI

RefSeq Acc Id:

XM_038672969 ⟹ XP_038528897

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	8	47,682,709 - 47,700,996 (+)	NCBI

RefSeq Acc Id:

XM_038672970 ⟹ XP_038528898

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	8	47,694,772 - 47,700,996 (+)	NCBI

RefSeq Acc Id:

XM_547902 ⟹ XP_547902

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	8	47,455,337 - 47,473,784 (+)	NCBI
Dog10K_Boxer_Tasha	8	47,140,385 - 47,158,661 (+)	NCBI

Sequence:

show sequence

GCACCTGGGACCAACTTCGGGAAGCGGGGAGCCCGGCGGGGGGGTGGGGGGAGCAAAAGACCTG
CGGCCTCAGCCCCTCCAAAGAGCCGGGAGATGACGGGGAAAGCGGGGGAAGCGCTGAGCAAGCC
CAAATCCGAGACAGTGGCCAAGAGTACCTCGGGGGGCGCCCCGGCCAGGTGCACTGGGTTCGGC
ATCCAGGAGATCCTGGGTTTGAACAAGGAGCCCCCCAGCTCCCACCCGCGGGCTGCCCTCGACG
GCCTGGCCCCCGGGCACCTGCTGGCGGCGCGCTCGGTGCTCAGCCCCGCGGGAGTGGGCGGCAT
GGGGCTGCTGGGGCCCGGGGGGCTCCCCGGCTTCTACGCGCAGCCCACCTTCCTGGAAGTGCTG
TCCGACCCGCAGAGCGTCCACTTGCAGCCGCTGGGCAGAGCGTCGGGGCCGCTGGACACCAGCC
AGACGGCCAGCTCGGATTCTGAAGATGTTTCCTCCAGCGACCGAAAAATGTCCAAATCGGCTTT
AAACCAGACCAAGAAACGGAAGAAGCGGCGACACAGGACAATCTTTACTTCCTACCAGCTAGAG
GAGCTGGAGAAGGCATTCAATGAGGCCCACTACCCAGATGTCTATGCCCGGGAGATGCTGGCCA
TGAAAACGGAGCTGCCTGAAGACAGGATACAGGTCTGGTTCCAGAACCGTAGAGCCAAGTGGAG
GAAACGGGAGAAGTGCTGGGGCCGGAGCAGCGTCATGGCGGAGTACGGGCTCTACGGGGCCATG
GTGCGGCACTCTATCCCCCTGCCAGAGTCCATCCTCAAGTCCGCCAAGGATGGCATCATGGACT
CCTGTGCCCCGTGGCTGCTGGGGATGCACAAAAAGTCGCTGGAGGCAGCAGCGGAGTCGGGGAG
GAAGGCCGAGGTGGAGCGCCAGGCCCTGCCCAAACTCGACAAGATGGAGCCGGAGGAGCGGGGC
CCCGACCCTCCAGCGGCCATGTCCCAGGAGGAACTGAGAGAGAACAGCATTGCGGCGCTCCGAG
CCAGAGCTCAGGAGCACAGCACCAAAGTGCTGGGGACTGTGTCCGGGCCCGACAGCCTGGCCCG
GAATGCCGAGGAGCCGGAGGAGGAGGAGGCCATGGACGAAGACAGGCCAGCGGAAAAGCTGAGT
CCACCGCAGCTTGAGGACATGGCTTAGGTCAGGGGCACGCAGACACCGAGCTCCCAGGACTCGC
CTCGGGCCTGTGGTGTTGGGAGGTGTTCTCTGAGGCAGGGCTGGGGCCGGGCCTGGCCTCTGCC
TCGCTCCCCCGCGCCCCGGGCCCTCCACGCCCCCCGGGGCTGACTTCAGCACAACTCAGCTCTG
GCAGAGGTTTGGGGCCGCGCTGAGACACCCCATCTAGTCTTGACCTCTCCAGCATCCTCCTCAT
CCCAAGGCCCTGCCTCAGCAGCTTTCTTGTCGTCCTAAACCACCCCTCATGCCACTTTCACTCA
AGCCCTTGGCGCCTCTCACTGTCCACATCTGCCCCTTGCTCTCTGTTCTCTTGCTTGAAAGAGC
CTCCCCTCCCCAGCTCTACGCACACACCCCCCCCCCGCCCCCATGGCTTCTGCTCTGCCCAGAC
CCAAAGCCCACAGCTGCAAACTGGCAGGGACTGCGGATTTGCACTCTAGTACCAGTGTCCTGAG
TACCCCCCCCCAGTCTTCAGCAAAACTGTGCGCCCCCCACCCAGCCTGTTCCTTCCCGAGGGCC
TGGGTCTGGGTCTCCACAGGGTGGATAAACTGCCCTGCAGGCCCAGGCACAACCTCTGCTCCAC
CCCATCGACAGGGCTCAGATTCCAGGTAAACTTGGAAGGTGTCATCCTGAGCCCCTCGGCCTCC
CTCCATTTCATGCCTTCCATGGTCACCCTCAGGAACCTGCCTACCCTACCTTCCCCCCCAGTAT
GGGTGCCAGCACCGCCATGTACAGTACCTGTAGAGTCCAGGGCCTGTGCCCTGCAGCCAGAGGG
CACCTGTCACAAATGCTGTGGTCATGGCATTGCTGGGGAGGCCAAACTCTTACCCAGAGCCCTT
GGGCCTGCATTCTGAAGCATCCTGCCCGCCCCCTACCCCTGGATATGCTACCTGTGACCCTGAT
CTGCTATGCAAGACACCCTTCTAGAGCTTCTTGCAGTTTATCGATGTGCATGTGTCCTGCCTTG
GAGCAACCCAATCCAGCTGTAAAATGAATGAATAGGAAGCCACAGATCTTGACTCAACTTGATC
CAGGCCATCCCTGGGAGGCCAAGCCTGGAGTGGGCCTGGGGCTATTATAGGCATCAAGGAGTGG
TCACAAGAAGGGCACAAGAAAGGACTCAAAGGAGAGCAAGGCAGAAGCCAGAGTTAGACCCAAA
CTAAGCAACTGGCACACACACCTGGCAGGTGTATGCTGTGGCATCTGCCCACTAGAATAGGATG
GACACAGTGACCGTGTAGGCATAGGGGACTGGGGGCTTCTTCCTGTCTGCTGATGGGAGGCACT
GTCCACCGGGTGGCCTCTCTGCAGCTGCCCCTGCCACCCCCAGGCCAGGCATATGTCTCCCTCA
CCCCCTTGACGTTTCCCTCTACCATCCCTCCCACCTTTGCAGGGAATACCTCGCAAGAGAAAGG
CCTGAGACAGTGAGTTTGGATTTTAATTCTGTATCAAAAGTTGATTTCTTCCTCATTCTGTTCA
CGGAATTCCCCGCCCCCTTCTTGTCTCTGTCTCCTTTGGTTTGAAGTGTTAGGCTGTAGCCCCC
AGTGTGTAAATATGTACATAGAGTGGGAAGAAAGAGACTTGATATTGAGGTGTTTGAAATATGG
AACTGTAATAACTTCTAGGTATTCTAAACCTGTGATTTCTGTGCCATTTTCTGTAAAGATACAA
GTGAGAATAAAATTGATGTACAAACATCAGGGGAGGGATCCAAGAATCCTCCGTGGGTGAGGAT
GGTGTATGTATGGGTAGCATAAAAAGTAAACCCATGGAGATGTTTTTAAGTCAAAATGACCAGA
T

hide sequence

Protein Sequences


Protein RefSeqs	XP_038340398	(Get FASTA)	NCBI Sequence Viewer
	XP_038340399	(Get FASTA)	NCBI Sequence Viewer
	XP_038399973	(Get FASTA)	NCBI Sequence Viewer
	XP_038399974	(Get FASTA)	NCBI Sequence Viewer
	XP_038455178	(Get FASTA)	NCBI Sequence Viewer
	XP_038464098	(Get FASTA)	NCBI Sequence Viewer
	XP_038528897	(Get FASTA)	NCBI Sequence Viewer
	XP_038528898	(Get FASTA)	NCBI Sequence Viewer
	XP_547902	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000024870.2
	ENSCAFP00030034176.1
	ENSCAFP00040017459.1
	ENSCAFP00845019887
	ENSCAFP00845019887.1

RefSeq Acc Id:	XP_547902 ⟸ XM_547902
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0S8C2 (UniProtKB/TrEMBL), A0A8I3NIJ9 (UniProtKB/TrEMBL), A0A8C0JQS3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTGKAGEALSKPKSETVAKSTSGGAPARCTGFGIQEILGLNKEPPSSHPRAALDGLAPGHLLAA RSVLSPAGVGGMGLLGPGGLPGFYAQPTFLEVLSDPQSVHLQPLGRASGPLDTSQTASSDSEDV SSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRI QVWFQNRRAKWRKREKCWGRSSVMAEYGLYGAMVRHSIPLPESILKSAKDGIMDSCAPWLLGMH KKSLEAAAESGRKAEVERQALPKLDKMEPEERGPDPPAAMSQEELRENSIAALRARAQEHSTKV LGTVSGPDSLARNAEEPEEEEAMDEDRPAEKLSPPQLEDMA hide sequence

Ensembl Acc Id:

ENSCAFP00000024870 ⟸ ENSCAFT00000026767

RefSeq Acc Id:	XP_038340398 ⟸ XM_038484470
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038340399 ⟸ XM_038484471
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038464098 ⟸ XM_038608170
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038528897 ⟸ XM_038672969
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0S8C2 (UniProtKB/TrEMBL), A0A8I3NIJ9 (UniProtKB/TrEMBL), A0A8C0JQS3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038528898 ⟸ XM_038672970
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038455178 ⟸ XM_038599250
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038399973 ⟸ XM_038544045
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0JQS3 (UniProtKB/TrEMBL), A0A8C0S8C2 (UniProtKB/TrEMBL), A0A8I3NIJ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038399974 ⟸ XM_038544046
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSCAFP00845019887 ⟸ ENSCAFT00845025278

Protein Domains

CVC Homeobox OAR

Promoters

RGD ID:

13684277

Promoter ID:

EPDNEW_C2346

Type:

multiple initiation site

Name:

VSX2_1

Description:

visual system homeobox 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	8	47,468,205 - 47,468,265	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000016913	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030021365	UniProtKB/TrEMBL
	ENSCAFG00040010906	UniProtKB/TrEMBL
	ENSCAFG00845014112	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000026767.5	UniProtKB/TrEMBL
	ENSCAFT00030039184.1	UniProtKB/TrEMBL
	ENSCAFT00040020129.1	UniProtKB/TrEMBL
	ENSCAFT00845025278	ENTREZGENE
	ENSCAFT00845025278.1	UniProtKB/TrEMBL
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	CVC	UniProtKB/TrEMBL
	Homeobox-like_sf	UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/TrEMBL
	Homeobox_dom	UniProtKB/TrEMBL
	OAR_dom	UniProtKB/TrEMBL
	VSX_homeobox_regulators	UniProtKB/TrEMBL
NCBI Gene	VSX2	ENTREZGENE
PANTHER	VISUAL SYSTEM HOMEOBOX 2	UniProtKB/TrEMBL
	VISUAL SYSTEM HOMEOBOX 2	UniProtKB/TrEMBL
Pfam	Homeodomain	UniProtKB/TrEMBL
	OAR	UniProtKB/TrEMBL
PROSITE	CVC	UniProtKB/TrEMBL
	HOMEOBOX_1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
	OAR	UniProtKB/TrEMBL
SMART	HOX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
UniProt	A0A8C0JQS3	ENTREZGENE
	A0A8C0S8C2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NIJ9	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:48313	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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