CCNT1 (cyclin T1) - Rat Genome Database

Name: CCNT1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: CCNT1 (cyclin T1) Canis lupus familiaris

Analyze

Symbol:

CCNT1

Name:

cyclin T1

RGD ID:

12351635

Description:

ENCODES a protein that exhibits 7SK snRNA binding (inferred); chromatin binding (inferred); cyclin-dependent protein serine/threonine kinase activator activity (inferred); INVOLVED IN response to xenobiotic stimulus (ortholog); PARTICIPATES IN RNA polymerase II transcription elongation pathway; ASSOCIATED WITH congestive heart failure (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cyclin-T1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCNT1 (cyclin T1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ccnt1 (cyclin T1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ccnt1 (cyclin T1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ccnt1 (cyclin T1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCNT1 (cyclin T1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccnt1 (cyclin T1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCNT1 (cyclin T1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCNT1 (cyclin T1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccnt1 (cyclin T1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	5,788,426 - 5,817,518 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	5,788,785 - 5,817,043 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	40,440,318 - 40,469,408 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	5,839,609 - 5,868,796 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	5,839,914 - 5,868,686 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	5,803,121 - 5,832,059 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	5,793,437 - 5,822,569 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	40,832,282 - 40,861,450 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congestive heart failure (ISO)

Experimental Diabetes Mellitus (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell division (IEA)

positive regulation by host of viral transcription (IEA)

positive regulation of transcription by RNA polymerase II (IEA)

positive regulation of transcription elongation by RNA polymerase II (IEA)

regulation of transcription by RNA polymerase II (IEA)

response to xenobiotic stimulus (ISO)

Cellular Component

cyclin/CDK positive transcription elongation factor complex (IEA)

cytosol (IEA)

nucleolus (ISO)

nucleoplasm (IEA)

nucleus (IEA,ISO)

P-TEFb complex (IEA)

Molecular Function

7SK snRNA binding (IEA)

chromatin binding (IEA)

cyclin-dependent protein serine/threonine kinase activator activity (IEA)

cyclin-dependent protein serine/threonine kinase regulator activity (IEA)

DNA binding (IEA)

DNA-binding transcription factor binding (IEA)

molecular condensate scaffold activity (IEA)

protein binding (ISO)

protein kinase binding (IEA)

RNA polymerase binding (IEA)

snRNA binding (IEA)

transcription cis-regulatory region binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase II transcription elongation pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

CCNT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	5,788,426 - 5,817,518 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	5,788,785 - 5,817,043 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	40,440,318 - 40,469,408 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	5,839,609 - 5,868,796 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	5,839,914 - 5,868,686 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	5,803,121 - 5,832,059 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	5,793,437 - 5,822,569 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	40,832,282 - 40,861,450 (-)	NCBI		UU_Cfam_GSD_1.0

CCNT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	48,688,458 - 48,716,707 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	48,688,458 - 48,716,998 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	49,082,241 - 49,110,490 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	47,373,019 - 47,397,048 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	47,373,018 - 47,397,048	NCBI
Celera	12	47,882,748 - 47,906,759 (-)	NCBI		Celera
Cytogenetic Map	12	q13.11-q13.12	NCBI
HuRef	12	46,116,314 - 46,144,840 (-)	NCBI		HuRef
CHM1_1	12	49,048,056 - 49,076,621 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	48,650,484 - 48,678,733 (-)	NCBI		T2T-CHM13v2.0

Ccnt1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	98,436,570 - 98,468,340 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	98,436,570 - 98,468,804 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	98,538,690 - 98,567,736 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	98,538,689 - 98,570,923 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	98,373,642 - 98,398,067 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	98,371,245 - 98,395,670 (-)	NCBI		MGSCv36	mm8
Celera	15	100,690,667 - 100,714,825 (-)	NCBI		Celera
Cytogenetic Map	15	F1	NCBI
cM Map	15	54.54	NCBI

Ccnt1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	131,566,176 - 131,596,988 (-)	NCBI		GRCr8
mRatBN7.2	7	129,687,146 - 129,718,080 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	129,691,209 - 129,717,871 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	131,499,023 - 131,525,200 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	133,724,573 - 133,750,750 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	133,637,075 - 133,663,250 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	140,215,052 - 140,245,958 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	140,219,551 - 140,245,723 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	114,723,098 - 114,752,376 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	137,288,635 - 137,314,809 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	137,365,064 - 137,391,433 (-)	NCBI
Celera	7	126,182,570 - 126,208,635 (-)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

Ccnt1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955500	7,580,625 - 7,606,913 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955500	7,580,625 - 7,606,913 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCNT1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	45,461,327 - 45,491,682 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	45,458,086 - 45,492,618 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	40,028,334 - 40,057,393 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	40,906,907 - 40,935,392 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	40,906,907 - 40,935,392 (+)	Ensembl	panpan1.1		panPan2

Ccnt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	66,576,723 - 66,597,193 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	6,562,974 - 6,588,409 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	6,567,663 - 6,588,107 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCNT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	14,768,426 - 14,806,813 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	14,768,423 - 14,808,424 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	15,062,983 - 15,101,607 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCNT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	44,932,774 - 44,966,412 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	44,937,350 - 44,966,018 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	201,181,682 - 201,215,359 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccnt1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624816	3,421,709 - 3,442,170 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624816	3,396,740 - 3,445,976 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CCNT1
381 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005636896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038438321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038438322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038513032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038513033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038577507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038577508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038640794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038640795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_543690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000014180 ⟹ ENSCAFP00000013117

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	27	5,788,785 - 5,817,043 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000080957 ⟹ ENSCAFP00000047493

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	27	5,788,785 - 5,817,043 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000081442 ⟹ ENSCAFP00000051904

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	27	5,788,785 - 5,805,606 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845044131 ⟹ ENSCAFP00845034580

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	27	5,839,914 - 5,868,686 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845044218 ⟹ ENSCAFP00845034655

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	27	5,839,914 - 5,856,819 (+)	Ensembl

RefSeq Acc Id:

XM_005636896 ⟹ XP_005636953

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	27	5,788,426 - 5,817,518 (+)	NCBI
Dog10K_Boxer_Tasha	27	40,440,318 - 40,469,408 (-)	NCBI

Sequence:

show sequence

TCGTCCACCACGCGACGACTCAGCGCAGCTCTCGCGGGAGGAGACGCGGTTTCCAACGAGACCT
TCTAACCCCACCCAACCCTCTAAGGGTCACGTGACTGGCGCCTGCGTCCTCGACTCGAGGTCTT
TCCTGGTCTCCTACTGGCTGTTAACTCGGCTACAGGCCGTCGCGAGGCCCATTCCGGAAGTAGC
CCCTTTATCTAGCATTCTTTTGCGGAAGCCTGTTACAACCCAGCCGGCCACCTTTCAGCGGAAG
TTCGTCACGTCGCAGTTGCCCCCGCACAGCGGATGTGTGTCGCCGCTTAGGTGACGCTGGGAAG
TGCTTGCAGCCTCCGCCGCTGCCTTCTGGTTGAAGCACTATGGAGGGAGAGAGGAAGAACAACA
ACAAACGGTGGTATTTTAGTCGAGAACAGCTGGAAAATAGCCCATCCCGTCGTTTTGGCCTGGA
CCCAGATAAAGAACTTTCTTATCGCCAGCAGGCGGCCAATCTGCTCCAGGACATGGGACAACGT
CTTAACGTCTCACAATTGACTATCAACACTGCTATAGTATACATGCATCGATTCTACATGATTC
AGTCCTTTACACAGTTCCATCGAAACTCTGTGGCTCCAGCAGCCTTATTTCTAGCAGCTAAAGT
AGAGGAGCAACCAAAAAAATTGGAACATGTCATCAAAGTAGCACATGCTTGTCTCCATCCGCAG
GAATCACTTCCTGATACTAGAAGTGAGGCTTACCTGCAACAAGTTCAAGATCTGGTGATACTAG
AAAGCATAATTCTGCAGACTTTAGGCTTTGAACTAACAATTGATCACCCACATACACATGTGGT
AAAGTGCACTCAATTGGTTCGAGCAAGCAAGGACTTAGCACAGACTTCTTACTTCATGGCAACT
AACAGCCTGCATTTGACCACATTTAGCCTGCAGTACACACCTCCTGTGGTGGCCTGTGTCTGCA
TTCATCTGGCTTGCAAGTGGTCCAACTGGGAGATCCCAGTCTCAACTGATGGGAAGCACTGGTG
GGAGTATGTTGACGCCACTGTGACCTTGGAACTTTTAGATGAACTGACACATGAATTTCTACAG
ATTCTGGAGAAAACTCCTAACCGGCTCAAACGAATTCGGAATTGGAGGGCATGCCAGGCTGCCA
AGAAAACAAAAGCAGATGATCGAGGAGCAGATGAAAACACTTCGGAGCAGACTATTCTCAATAT
GATTTCCCAGAGCTCTTCAGACACAACTATTGCAGGTTTAATGAGCATGTCAACTTCTTCTACA
AGTGCAGTGCCTTCCCTTCCAGCCACTGAAGAGTCATCCAGCAACCTAAGCAATGTGGAGATGC
TGCAGGGCGAGCGTTGGCTTTCCTCCCAACCTCCTTTTAAACTGGAACCTGCTCAGGGTCATCG
GACTAGTGAGAATTTAGCACTTATAGGAGTTGATCATTCTTTGCAACAGGATGGTTCTAATGCA
TTTATTTCCCAGAAGCAGAATAGTAAGAGTGTGCCATCAGCTAAAGTGTCACTGAAAGAATACC
GTGCAAAGCATGCAGAAGAGTTGGCTGCCCAGAAGAGGCAATTGGAGAACATGGAGGCCAATGT
GAAGTCACAATATGCATATGCTGCCCAGAATCTCCTGTCTCACCATGATAGCCACTCTTCAGTC
ATTCTGAAAATGCCCATAGAGGGCTCAGAAAACCCCGAGCGGCCTTTTCTGGAAAAGACTGACA
AAGCAGCTCTCAAAATGAGAATCCCAGTGGCAAGTGGAGATAAAGCTGCCTCTTCAAAACCAGA
GGAGATAAAAATGCCCCCTAAAGTCCATGCTGCAGCTGACAAGCACAATTCTTTAGAGGACAGT
GTCACAAAGAGCCGAGAGCACAAAGAAAAGCACAAGACTCACCCATCTAATCATCATCATCATC
ATAATCATCACTCACACAAGCACTCTCACTCACAGCTTCCAGCTGGTACTGGGAACAAACGTCC
AGGTGATCCAAAACATAGTAGCCAGACAAGCACCTTAGCACACAAAACCTATAGCTTGTCTAGT
TCTTTCTCCTCTTCCAGTTCTACTCGTAAAAGGGGTCCTCCTGAAGAGACTGGAGGCCCAATGT
TTGATCATCCAGCCAAGATTGCCAAGAGTACTAAATCCTCTTCTGTAAATTTCACCTTTCCTCC
TCTTCCTACAATGGCCCAGTTGCCTGGGCATAGCTCAGACACAAGTGGCCTTTCCTTTTCACAG
CCCAGCTGTAAAACTCGAGTTCCTCATATGAAACTGGATAAAGGGCCCACTGGAGCCAATGGTC
ACAATGTTGATTAGAGTTGATGTCTTCCCTCTTCTTGCCAAGACTGAAATATGGAGGGTTTGTT
TTATCAAACAGTTGTGGATCCTTTTGGTGTTTAATATATCAGAAGAGAGGAAGTATTTAAACGT
CAAATCTTTTAAGAGACTTTTAAAAAAATAATTTAAAGAAA

hide sequence

RefSeq Acc Id:

XM_038438321 ⟹ XP_038294249

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	27	5,839,609 - 5,868,796 (+)	NCBI

RefSeq Acc Id:

XM_038438322 ⟹ XP_038294250

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	27	5,839,609 - 5,868,796 (+)	NCBI

RefSeq Acc Id:

XM_038513032 ⟹ XP_038368960

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	27	5,803,121 - 5,832,059 (+)	NCBI

RefSeq Acc Id:

XM_038513033 ⟹ XP_038368961

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	27	5,803,121 - 5,832,059 (+)	NCBI

RefSeq Acc Id:

XM_038577507 ⟹ XP_038433435

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	27	40,832,282 - 40,861,450 (-)	NCBI

RefSeq Acc Id:

XM_038577508 ⟹ XP_038433436

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	27	40,832,282 - 40,861,450 (-)	NCBI

RefSeq Acc Id:

XM_038640794 ⟹ XP_038496722

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	27	5,793,437 - 5,822,569 (+)	NCBI

RefSeq Acc Id:

XM_038640795 ⟹ XP_038496723

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	27	5,793,437 - 5,822,569 (+)	NCBI

RefSeq Acc Id:

XM_543690 ⟹ XP_543690

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	27	5,788,426 - 5,817,518 (+)	NCBI
Dog10K_Boxer_Tasha	27	40,440,318 - 40,469,408 (-)	NCBI

Sequence:

show sequence

TCGTCCACCACGCGACGACTCAGCGCAGCTCTCGCGGGAGGAGACGCGGTTTCCAACGAGACCT
TCTAACCCCACCCAACCCTCTAAGGGTCACGTGACTGGCGCCTGCGTCCTCGACTCGAGGTCTT
TCCTGGTCTCCTACTGGCTGTTAACTCGGCTACAGGCCGTCGCGAGGCCCATTCCGGAAGTAGC
CCCTTTATCTAGCATTCTTTTGCGGAAGCCTGTTACAACCCAGCCGGCCACCTTTCAGCGGAAG
TTCGTCACGTCGCAGTTGCCCCCGCACAGCGGATGTGTGTCGCCGCTTAGGTGACGCTGGGAAG
TGCTTGCAGCCTCCGCCGCTGCCTTCTGGTTGAAGCACTATGGAGGGAGAGAGGAAGAACAACA
ACAAACGGTGGTATTTTAGTCGAGAACAGCTGGAAAATAGCCCATCCCGTCGTTTTGGCCTGGA
CCCAGATAAAGAACTTTCTTATCGCCAGCAGGCGGCCAATCTGCTCCAGGACATGGGACAACGT
CTTAACGTCTCACAATTGACTATCAACACTGCTATAGTATACATGCATCGATTCTACATGATTC
AGTCCTTTACACAGTTCCATCGAAACTCTGTGGCTCCAGCAGCCTTATTTCTAGCAGCTAAAGT
AGAGGAGCAACCAAAAAAATTGGAACATGTCATCAAAGTAGCACATGCTTGTCTCCATCCGCAG
GAATCACTTCCTGATACTAGAAGTGAGGCTTACCTGCAACAAGTTCAAGATCTGGTGATACTAG
AAAGCATAATTCTGCAGACTTTAGGCTTTGAACTAACAATTGATCACCCACATACACATGTGGT
AAAGTGCACTCAATTGGTTCGAGCAAGCAAGGACTTAGCACAGACTTCTTACTTCATGGCAACT
AACAGCCTGCATTTGACCACATTTAGCCTGCAGTACACACCTCCTGTGGTGGCCTGTGTCTGCA
TTCATCTGGCTTGCAAGTGGTCCAACTGGGAGATCCCAGTCTCAACTGATGGGAAGCACTGGTG
GGAGTATGTTGACGCCACTGTGACCTTGGAACTTTTAGATGAACTGACACATGAATTTCTACAG
ATTCTGGAGAAAACTCCTAACCGGCTCAAACGAATTCGGAATTGGAGGGCATGCCAGGCTGCCA
AGAAAACAAAAGCAGATGATCGAGGAGCAGATGAAAACACTTCGGAGCAGACTATTCTCAATAT
GATTTCCCAGAGCTCTTCAGACACAACTATTGCAGGTTTAATGAGCATGTCAACTTCTTCTACA
AGTGCAGTGCCTTCCCTTCCAGCCACTGAAGAGTCATCCAGCAACCTAAGCAATGTGGAGATGC
TGCAGGGCGAGCGTTGGCTTTCCTCCCAACCTCCTTTTAAACTGGAACCTGCTCAGGGTCATCG
GACTAGTGAGAATTTAGCACTTATAGGAGTTGATCATTCTTTGCAACAGGATGGTTCTAATGCA
TTTATTTCCCAGAAGCAGAATAGTAAGAGTGTGCCATCAGCTAAAGTGTCACTGAAAGAATACC
GTGCAAAGCATGCAGAAGAGTTGGCTGCCCAGAAGAGGCAATTGGAGAACATGGAGGCCAATGT
GAAGTCACAATATGCATATGCTGCCCAGAATCTCCTGTCTCACCATGATAGCCACTCTTCAGTC
ATTCTGAAAATGCCCATAGAGGGCTCAGAAAACCCCGAGCGGCCTTTTCTGGAAAAGACTGACA
AAGCAGCTCTCAAAATGAGAATCCCAGTGGCAAGTGGAGATAAAGCTGCCTCTTCAAAACCAGA
GGAGATAAAAATGCCCCCTAAAGTCCATGCTGCAGCTGACAAGCACAATTCTTTAGAGGACAGT
GTCACAAAGAGCCGAGAGCACAAAGAAAAGCACAAGACTCACCCATCTAATCATCATCATCATC
ATAATCATCACTCACACAAGCACTCTCACTCACAGCTTCCAGCTGGTACTGGGAACAAACGTCC
AGGTGATCCAAAACATAGTAGCCAGACAAGCACCTTAGCACACAAAACCTATAGCTTGTCTAGT
TCTTTCTCCTCTTCCAGTTCTACTCGTAAAAGGGGTCCTCCTGAAGAGACTGGAGGCCCAATGT
TTGATCATCCAGCCAAGATTGCCAAGAGTACTAAATCCTCTTCTGTAAATTTCACCTTTCCTCC
TCTTCCTACAATGGCCCAGTTGCCTGGGCATAGCTCAGACACAAGTGGCCTTTCCTTTTCACAG
CCCAGCTGTAAAACTCGAGTTCCTCATATGAAACTGGATAAAGGGCCCACTGGAGCCAATGGTC
ACAATGTAAGCCAGACAATAGACTATCAAGATACTGTGAATATGCTTCACTCCCTTCTCAGTGC
CCAGGGTGTTCAGCCCACTCAGCCCCCTGCATTTGAATTTGTTCATTATGGTGAATATCTGAAT
CCACGGGCTGGGGGAATGTCCTCCAGATCTGGCAATACAGACAAACCCCGGCTACCACCTCTAC
CATCAGAACCTCCTCCACCACTTCCACCCCTTCCTAAGTAAAAGAGACAGAGGAGGGAAAAAAA
TTCCTTAAAAACAACTTTTTTTTTTTTTTTTTTTTTGGTAACTACTGATTCTGAACTAAGGAAA
TTACTTCCCTTATGAAATATGTCACCCTTCTTGGACTAGGGAATAAATTAATGTCGACATGCAA
GTGGGAGGGTGGTAGAGGGGCTTGGTTATTATAGCTACTGCCTCAGAAATTTAACTATTTTATT
ATAGTTTTTACTGGTATTAGAGAGGTGAGAATGTGTTGAAGCTGTGAAGGATTAAGAATACTTT
CTCTGTTCTTGGCCTCTCCACCTCCTAATTAGGTTGATTAGAGTTGATGTCTTCCCTCTTCTTG
CCAAGACTGAAATATGGAGGGTTTGTTTTATCAAACAGTTGTGGATCCTTTTGGTGTTTAATAT
ATCAGAAGAGAGGAAGTATTTAAACGTCAAATCTTTTAAGAGACTTTTAAAAAAATAATTTAAA
GAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005636953	(Get FASTA)	NCBI Sequence Viewer
	XP_038294249	(Get FASTA)	NCBI Sequence Viewer
	XP_038294250	(Get FASTA)	NCBI Sequence Viewer
	XP_038368960	(Get FASTA)	NCBI Sequence Viewer
	XP_038368961	(Get FASTA)	NCBI Sequence Viewer
	XP_038433435	(Get FASTA)	NCBI Sequence Viewer
	XP_038433436	(Get FASTA)	NCBI Sequence Viewer
	XP_038496722	(Get FASTA)	NCBI Sequence Viewer
	XP_038496723	(Get FASTA)	NCBI Sequence Viewer
	XP_543690	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000013117.6
	ENSCAFP00000051904.1
	ENSCAFP00030036346.1
	ENSCAFP00030036383.1
	ENSCAFP00040040858.1
	ENSCAFP00040040875.1
	ENSCAFP00845034580
	ENSCAFP00845034580.1
	ENSCAFP00845034655.1

RefSeq Acc Id:	XP_543690 ⟸ XM_543690
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0TQZ3 (UniProtKB/TrEMBL), A0A8I3PTL5 (UniProtKB/TrEMBL), A0A8C0KMF4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGERKNNNKRWYFSREQLENSPSRRFGLDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIV YMHRFYMIQSFTQFHRNSVAPAALFLAAKVEEQPKKLEHVIKVAHACLHPQESLPDTRSEAYLQ QVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYT PPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQILEKTPNRLKRIR NWRACQAAKKTKADDRGADENTSEQTILNMISQSSSDTTIAGLMSMSTSSTSAVPSLPATEESS SNLSNVEMLQGERWLSSQPPFKLEPAQGHRTSENLALIGVDHSLQQDGSNAFISQKQNSKSVPS AKVSLKEYRAKHAEELAAQKRQLENMEANVKSQYAYAAQNLLSHHDSHSSVILKMPIEGSENPE RPFLEKTDKAALKMRIPVASGDKAASSKPEEIKMPPKVHAAADKHNSLEDSVTKSREHKEKHKT HPSNHHHHHNHHSHKHSHSQLPAGTGNKRPGDPKHSSQTSTLAHKTYSLSSSFSSSSSTRKRGP PEETGGPMFDHPAKIAKSTKSSSVNFTFPPLPTMAQLPGHSSDTSGLSFSQPSCKTRVPHMKLD KGPTGANGHNVSQTIDYQDTVNMLHSLLSAQGVQPTQPPAFEFVHYGEYLNPRAGGMSSRSGNT DKPRLPPLPSEPPPPLPPLPK hide sequence

RefSeq Acc Id:	XP_005636953 ⟸ XM_005636896
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0KMF4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGERKNNNKRWYFSREQLENSPSRRFGLDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIV YMHRFYMIQSFTQFHRNSVAPAALFLAAKVEEQPKKLEHVIKVAHACLHPQESLPDTRSEAYLQ QVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYT PPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQILEKTPNRLKRIR NWRACQAAKKTKADDRGADENTSEQTILNMISQSSSDTTIAGLMSMSTSSTSAVPSLPATEESS SNLSNVEMLQGERWLSSQPPFKLEPAQGHRTSENLALIGVDHSLQQDGSNAFISQKQNSKSVPS AKVSLKEYRAKHAEELAAQKRQLENMEANVKSQYAYAAQNLLSHHDSHSSVILKMPIEGSENPE RPFLEKTDKAALKMRIPVASGDKAASSKPEEIKMPPKVHAAADKHNSLEDSVTKSREHKEKHKT HPSNHHHHHNHHSHKHSHSQLPAGTGNKRPGDPKHSSQTSTLAHKTYSLSSSFSSSSSTRKRGP PEETGGPMFDHPAKIAKSTKSSSVNFTFPPLPTMAQLPGHSSDTSGLSFSQPSCKTRVPHMKLD KGPTGANGHNVD hide sequence

Ensembl Acc Id:

ENSCAFP00000013117 ⟸ ENSCAFT00000014180

Ensembl Acc Id:

ENSCAFP00000047493 ⟸ ENSCAFT00000080957

Ensembl Acc Id:

ENSCAFP00000051904 ⟸ ENSCAFT00000081442

RefSeq Acc Id:	XP_038368960 ⟸ XM_038513032
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038368961 ⟸ XM_038513033
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038496722 ⟸ XM_038640794
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038496723 ⟸ XM_038640795
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038294249 ⟸ XM_038438321
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0TQZ3 (UniProtKB/TrEMBL), A0A8I3PTL5 (UniProtKB/TrEMBL), A0A8C0KMF4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038294250 ⟸ XM_038438322
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0KMF4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038433436 ⟸ XM_038577508
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0KMF4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038433435 ⟸ XM_038577507
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KMF4 (UniProtKB/TrEMBL), A0A8C0TQZ3 (UniProtKB/TrEMBL), A0A8I3PTL5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845034655 ⟸ ENSCAFT00845044218

Ensembl Acc Id:

ENSCAFP00845034580 ⟸ ENSCAFT00845044131

Protein Domains

Cyclin-like

Promoters

RGD ID:

13688118

Promoter ID:

EPDNEW_C6185

Type:

initiation region

Name:

CCNT1_1

Description:

cyclin T1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	27	5,788,747 - 5,788,807	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000008923	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030022585	UniProtKB/TrEMBL
	ENSCAFG00040025089	UniProtKB/TrEMBL
	ENSCAFG00845024989	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000014180.6	UniProtKB/TrEMBL
	ENSCAFT00000081442.2	UniProtKB/TrEMBL
	ENSCAFT00030041654.1	UniProtKB/TrEMBL
	ENSCAFT00030041701.1	UniProtKB/TrEMBL
	ENSCAFT00040046806.1	UniProtKB/TrEMBL
	ENSCAFT00040046827.1	UniProtKB/TrEMBL
	ENSCAFT00845044131	ENTREZGENE
	ENSCAFT00845044131.1	UniProtKB/TrEMBL
	ENSCAFT00845044218.1	UniProtKB/TrEMBL
Gene3D-CATH	Cyclin-like	UniProtKB/TrEMBL
InterPro	Cyclin-like	UniProtKB/TrEMBL
	Cyclin-like_sf	UniProtKB/TrEMBL
	Cyclin/Ssn8	UniProtKB/TrEMBL
	CYCLIN_CCNT1_rpt2	UniProtKB/TrEMBL
	Cyclin_N	UniProtKB/TrEMBL
NCBI Gene	CCNT1	ENTREZGENE
PANTHER	PTHR10026	UniProtKB/TrEMBL
	PTHR10026:SF42	UniProtKB/TrEMBL
Pfam	Cyclin_N	UniProtKB/TrEMBL
	CycT2-like_C	UniProtKB/TrEMBL
SMART	CYCLIN	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47954	UniProtKB/TrEMBL
UniProt	A0A8C0KMF4	ENTREZGENE
	A0A8C0PKF1_CANLF	UniProtKB/TrEMBL
	A0A8C0TQZ3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PTL5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3Q5Y0_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:38906	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations