PLOD2 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 2) - Rat Genome Database

PLOD2 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 2) - Rat Genome Database

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Gene: PLOD2 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 2) Canis lupus familiaris

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Symbol:

PLOD2

Name:

procollagen-lysine,2-oxoglutarate 5-dioxygenase 2

RGD ID:

12319922

Description:

ENCODES a protein that exhibits procollagen glucosyltransferase activity (ortholog); INVOLVED IN cellular response to hormone stimulus (ortholog); peptidyl-lysine hydroxylation (ortholog); protein O-linked glycosylation (ortholog); ASSOCIATED WITH Bone Neoplasms (ortholog); Bruck syndrome (ortholog); Bruck Syndrome 2 (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred); INTERACTS WITH bisphenol A

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	41,290,183 - 41,382,917 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	41,290,567 - 41,382,807 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
ROS_Cfam_1.0	23	41,914,649 - 42,007,609 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	41,915,768 - 42,007,611 (-)	Ensembl		ROS_Cfam_1.0 Ensembl

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PLOD2	Dog	hypothyroidism		ISO	RGD:3353	9068941	mRNA:decreased expression:multiple organs	RGD	PMID:15817667\|REF_RGD_ID:2314536
PLOD2	Dog	lung adenocarcinoma	disease_progression	ISO	RGD:1606836	9068941		RGD	PMID:29072684\|REF_RGD_ID:151665822
PLOD2	Dog	Neoplasm Metastasis	ameliorates	ISO	RGD:1606836	9068941	associated with lung non-small cell carcinoma	RGD	PMID:29072684\|REF_RGD_ID:151665822

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PLOD2	Dog	Bruck syndrome		ISO	RGD:1606836	8554872	ClinVar Annotator: match by term: OSTEOGENESIS IMPERFECTA WITH CONGENITAL JOINT CONTRACTURES	ClinVar	PMID:25086671\|PMID:25741868\|PMID:28492532\|PMID:37076969
PLOD2	Dog	Bruck Syndrome 2		ISO	RGD:1606836	8554872	ClinVar Annotator: match by term: Bruck syndrome 2 \| ClinVar Annotator: match by term: PLOD2-related more ...	ClinVar	PMID:12881513\|PMID:15523624\|PMID:22689593\|PMID:25086671\|PMID:25238597\|PMID:25741868\|PMID:28116328\|PMID:28492532\|PMID:29177700\|PMID:29178448\|PMID:31472299\|PMID:31785789\|PMID:32612477\|PMID:32655337\|PMID:33664768\|PMID:33778323\|PMID:35278031\|PMID:37076969\|PMID:9927692
PLOD2	Dog	cleft soft palate		ISO	RGD:1606836	8554872	ClinVar Annotator: match by term: Cleft soft palate	ClinVar	PMID:22689593\|PMID:25238597\|PMID:25741868\|PMID:28492532\|PMID:29177700\|PMID:29178448\|PMID:32612477
PLOD2	Dog	genetic disease		ISO	RGD:1606836	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:25741868\|PMID:28492532
PLOD2	Dog	osteogenesis imperfecta		ISO	RGD:1606836	8554872	ClinVar Annotator: match by term: Osteogenesis imperfecta	ClinVar	PMID:22689593\|PMID:25086671\|PMID:25238597\|PMID:25741868\|PMID:28492532\|PMID:29178448\|PMID:32655337\|PMID:33778323\|PMID:35278031\|PMID:37076969
PLOD2	Dog	osteogenesis imperfecta		ISO	RGD:1606836	8554872	ClinVar Annotator: match by term: Osteogenesis imperfecta	ClinVar	PMID:22689593\|PMID:25086671\|PMID:25238597\|PMID:25741868\|PMID:28492532\|PMID:29178448\|PMID:32655337\|PMID:35278031\|PMID:37076969

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PLOD2	Dog	Bone Neoplasms		ISO	RGD:1606836	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:15865105
PLOD2	Dog	Experimental Liver Cirrhosis		ISO	RGD:1606836	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:25380136
PLOD2	Dog	juvenile rheumatoid arthritis		ISO	RGD:1606836	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:19565504
PLOD2	Dog	liver cirrhosis		ISO	RGD:1606836	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:26396155
PLOD2	Dog	osteoarthritis		ISO	RGD:1606836	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:18784066

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PLOD2	Dog	Bruck Syndrome 2		ISO	RGD:1606836	7240710		OMIM

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PLOD2	Dog	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of PLOD2 mRNA	CTD	PMID:38866337

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PLOD2	Dog	cellular response to hormone stimulus		ISO	RGD:3353	9068941		RGD	PMID:15817667\|REF_RGD_ID:2314536
PLOD2	Dog	collagen fibril organization	involved_in	IBA	MGI:1347008\|PANTHER:PTN000842962\|ZFIN:ZDB-GENE-070326-1	150520179		GO_Central	GO_REF:0000033
PLOD2	Dog	hydroxylysine biosynthetic process	involved_in	IEA	UniProtKB:O00469\|ensembl:ENSP00000282903	150520179		Ensembl	GO_REF:0000107
PLOD2	Dog	peptidyl-lysine hydroxylation	involved_in	ISO	RGD:1606836	9068941	PMID:10934207	CAFA	PMID:10934207
PLOD2	Dog	protein O-linked glycosylation	NOT\|involved_in	ISO	RGD:1606836	9068941	PMID:10934207	CAFA	PMID:10934207
PLOD2	Dog	response to hypoxia		ISO	RGD:3353	9068941		RGD	PMID:14622280\|REF_RGD_ID:1303932
PLOD2	Dog	response to hypoxia	involved_in	IEA	UniProtKB:O00469\|ensembl:ENSP00000282903	150520179		Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PLOD2	Dog	collagen-containing extracellular matrix	is_active_in	IBA	MGI:1347008\|PANTHER:PTN000842962	150520179		GO_Central	GO_REF:0000033
PLOD2	Dog	endoplasmic reticulum	located_in	IEA	UniProtKB-KW:KW-0256	150520179		UniProt	GO_REF:0000043
PLOD2	Dog	endoplasmic reticulum	is_active_in	IBA	FB:FBgn0036147\|MGI:1347008\|PANTHER:PTN000842962\|UniProtKB:O60568	150520179		GO_Central	GO_REF:0000033
PLOD2	Dog	endoplasmic reticulum membrane	located_in	IEA	UniProtKB-SubCell:SL-0097	150520179		UniProt	GO_REF:0000044
PLOD2	Dog	extracellular space	is_active_in	IBA	FB:FBgn0036147\|MGI:1347008\|PANTHER:PTN000842962	150520179		GO_Central	GO_REF:0000033
PLOD2	Dog	Golgi apparatus	is_active_in	IBA	MGI:1347008\|PANTHER:PTN000842962\|UniProtKB:O60568	150520179		GO_Central	GO_REF:0000033
PLOD2	Dog	membrane	located_in	IEA	UniProtKB-KW:KW-0472	150520179		UniProt	GO_REF:0000043
PLOD2	Dog	rough endoplasmic reticulum	located_in	IEA	UniProtKB-SubCell:SL-0235	150520179		UniProt	GO_REF:0000044

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
PLOD2	Dog	dioxygenase activity	enables	IEA	UniProtKB-KW:KW-0223	150520179		UniProt	GO_REF:0000043
PLOD2	Dog	iron ion binding	enables	IEA	InterPro:IPR006620	150520179		InterPro	GO_REF:0000002
PLOD2	Dog	L-ascorbic acid binding	enables	IEA	UniProtKB-KW:KW-0847	150520179		UniProt	GO_REF:0000043
PLOD2	Dog	L-ascorbic acid binding	enables	IEA	InterPro:IPR006620	150520179		InterPro	GO_REF:0000002
PLOD2	Dog	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	150520179		UniProt	GO_REF:0000043
PLOD2	Dog	oxidoreductase activity	enables	IEA	UniProtKB-KW:KW-0560	150520179		UniProt	GO_REF:0000043
PLOD2	Dog	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	enables	IEA	InterPro:IPR006620	150520179		InterPro	GO_REF:0000002
PLOD2	Dog	procollagen glucosyltransferase activity	NOT\|enables	ISO	RGD:1606836	9068941	PMID:10934207	CAFA	PMID:10934207
PLOD2	Dog	procollagen-lysine 5-dioxygenase activity	enables	IBA	MGI:1347008\|PANTHER:PTN000842962\|RGD:621382\|UniProtKB:O00469\|UniProtKB:O60568\|UniProtKB:Q02809\|ZFIN:ZDB-GENE-070326-1	150520179		GO_Central	GO_REF:0000033
PLOD2	Dog	procollagen-lysine 5-dioxygenase activity	enables	IEA	InterPro:IPR001006	150520179		InterPro	GO_REF:0000002
PLOD2	Dog	procollagen-lysine 5-dioxygenase activity	enables	IEA	UniProtKB:O00469\|ensembl:ENSP00000282903	150520179		Ensembl	GO_REF:0000107

PLOD2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	41,290,183 - 41,382,917 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	41,290,567 - 41,382,807 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
ROS_Cfam_1.0	23	41,914,649 - 42,007,609 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	41,915,768 - 42,007,611 (-)	Ensembl		ROS_Cfam_1.0 Ensembl

PLOD2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	146,069,440 - 146,161,184 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	146,035,139 - 146,163,725 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	145,787,227 - 145,878,971 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	147,269,917 - 147,361,972 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	144,204,566 - 144,296,620 (-)	NCBI		Celera
Cytogenetic Map	3	q24	NCBI
HuRef	3	143,164,166 - 143,256,088 (-)	NCBI		HuRef
CHM1_1	3	145,750,160 - 145,842,267 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	148,824,992 - 148,916,735 (-)	NCBI		T2T-CHM13v2.0

Plod2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	92,421,828 - 92,490,481 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	92,424,276 - 92,490,481 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	92,539,636 - 92,608,428 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	92,542,223 - 92,608,428 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	92,437,061 - 92,503,266 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	92,346,223 - 92,412,195 (+)	NCBI		MGSCv36	mm8
Celera	9	92,126,694 - 92,192,758 (+)	NCBI		Celera
Cytogenetic Map	9	E3.3	NCBI
cM Map	9	48.4	NCBI

Plod2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	101,964,318 - 102,047,022 (+)	NCBI		GRCr8
mRatBN7.2	8	93,084,548 - 93,167,255 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	93,084,513 - 93,167,255 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	98,757,951 - 98,827,969 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	96,957,203 - 97,027,220 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	94,787,446 - 94,864,034 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	99,977,334 - 100,059,736 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	99,977,334 - 100,059,736 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	99,462,925 - 99,529,696 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Rnor_5.0	8	99,543,695 - 99,545,578 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	97,525,279 - 97,623,152 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	97,544,733 - 97,642,604 (+)	NCBI
Celera	8	92,602,361 - 92,678,608 (+)	NCBI		Celera
Cytogenetic Map	8	q31	NCBI

Plod2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955474	11,392,163 - 11,475,508 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955474	11,392,163 - 11,473,918 (+)	NCBI	ChiLan1.0	ChiLan1.0

PLOD2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	143,960,509 - 144,050,676 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	143,965,240 - 144,055,393 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	143,091,833 - 143,181,831 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	150,675,423 - 150,764,939 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	150,675,424 - 150,764,939 (-)	Ensembl	panpan1.1		panPan2

Plod2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	80,594,496 - 80,680,880 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936519	9,053,033 - 9,140,059 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936519	9,053,192 - 9,139,221 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PLOD2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	86,401,244 - 86,513,105 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	86,402,673 - 86,513,167 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	94,175,156 - 94,243,446 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PLOD2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	44,489,804 - 44,590,284 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	44,490,042 - 44,591,526 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	17,375,187 - 17,466,565 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Plod2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	22,944,184 - 23,034,231 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	22,944,710 - 23,034,200 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

.

Variants in PLOD2
964 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10


RefSeq Transcripts	XM_005634545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038432589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038432590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_542822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAAUVH010000059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000012961 ⟹ ENSCAFP00000011995

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	23	41,290,567 - 41,382,807 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00000063167 ⟹ ENSCAFP00000043292

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	23	41,290,567 - 41,382,807 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00000070613 ⟹ ENSCAFP00000062728

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	23	41,290,567 - 41,382,807 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00000083083 ⟹ ENSCAFP00000064614

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	23	41,290,567 - 41,382,807 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845036374 ⟹ ENSCAFP00845028472

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	23	41,915,768 - 42,007,611 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845036565 ⟹ ENSCAFP00845028613

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	23	41,915,768 - 42,007,611 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845036735 ⟹ ENSCAFP00845028759

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	23	41,915,768 - 42,007,611 (-)	Ensembl

RefSeq Acc Id:

XM_038432589 ⟹ XP_038288517

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	23	41,914,649 - 42,007,609 (-)	NCBI

RefSeq Acc Id:

XM_038432590 ⟹ XP_038288518

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	23	41,914,649 - 42,007,609 (-)	NCBI


Protein RefSeqs	XP_038288517	(Get FASTA)	NCBI Sequence Viewer
	XP_038288518	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000011995.3
	ENSCAFP00000043292.1
	ENSCAFP00000062728.2
	ENSCAFP00030010949.1
	ENSCAFP00030011043.1
	ENSCAFP00040012937.1
	ENSCAFP00040013008.1
	ENSCAFP00845028472
	ENSCAFP00845028472.1
	ENSCAFP00845028613
	ENSCAFP00845028613.1
	ENSCAFP00845028759.1

Ensembl Acc Id:

ENSCAFP00000062728 ⟸ ENSCAFT00000070613

Ensembl Acc Id:

ENSCAFP00000043292 ⟸ ENSCAFT00000063167

Ensembl Acc Id:

ENSCAFP00000064614 ⟸ ENSCAFT00000083083

Ensembl Acc Id:

ENSCAFP00000011995 ⟸ ENSCAFT00000012961

RefSeq Acc Id:	XP_038288518 ⟸ XM_038432590
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0MSK9 (UniProtKB/TrEMBL), A0A8I3P8T8 (UniProtKB/TrEMBL), A0A8I3PE41 (UniProtKB/TrEMBL), A0A8P0TEE6 (UniProtKB/TrEMBL)

Protein Domains

Fe2OG dioxygenase

RGD ID:

Promoter ID:

Type:

multiple initiation site

Name:

PLOD2_1

Description:

procollagen-lysine,2-oxoglutarate 5-dioxygenase 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_C5543

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	23	41,382,996 - 41,383,056	EPDNEW

RGD ID:

Promoter ID:

Type:

single initiation site

Name:

PLOD2_2

Description:

procollagen-lysine,2-oxoglutarate 5-dioxygenase 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_C5542

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	23	41,383,129 - 41,383,189	EPDNEW

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000008101	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030006629	UniProtKB/TrEMBL
	ENSCAFG00040007879	UniProtKB/TrEMBL
	ENSCAFG00845020429	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000012961.5	UniProtKB/TrEMBL
	ENSCAFT00000063167.2	UniProtKB/TrEMBL
	ENSCAFT00000070613.2	UniProtKB/TrEMBL
	ENSCAFT00030012511.1	UniProtKB/TrEMBL
	ENSCAFT00030012616.1	UniProtKB/TrEMBL
	ENSCAFT00040014942.1	UniProtKB/TrEMBL
	ENSCAFT00040015021.1	UniProtKB/TrEMBL
	ENSCAFT00845036374	ENTREZGENE
	ENSCAFT00845036374.1	UniProtKB/TrEMBL
	ENSCAFT00845036565	ENTREZGENE
	ENSCAFT00845036565.1	UniProtKB/TrEMBL
	ENSCAFT00845036735.1	UniProtKB/TrEMBL
Gene3D-CATH	q2cbj1_9rhob like domain	UniProtKB/TrEMBL
	Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A	UniProtKB/TrEMBL
InterPro	Collagen_mod_GT25	UniProtKB/TrEMBL
	IPNS-like_FE2OG_OXY	UniProtKB/TrEMBL
	Nucleotide-diphossugar_trans	UniProtKB/TrEMBL
	Oxoglu/Fe-dep_dioxygenase	UniProtKB/TrEMBL
	Pro_4_hyd_alph	UniProtKB/TrEMBL
	Procol_lys_dOase	UniProtKB/TrEMBL
NCBI Gene	PLOD2	ENTREZGENE
PANTHER	PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE 2	UniProtKB/TrEMBL
	PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER	UniProtKB/TrEMBL
Pfam	2OG-FeII_Oxy	UniProtKB/TrEMBL
PROSITE	FE2OG_OXY	UniProtKB/TrEMBL
	LYS_HYDROXYLASE	UniProtKB/TrEMBL
SMART	P4Hc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53448	UniProtKB/TrEMBL
UniProt	A0A8C0MSK9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0QGQ1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3P8T8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PAF7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PE41	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0TEE6	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:44702	ENTREZGENE