MESP2 (mesoderm posterior bHLH transcription factor 2) - Rat Genome Database

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Pathways
Gene: MESP2 (mesoderm posterior bHLH transcription factor 2) Canis lupus familiaris
Analyze
Symbol: MESP2
Name: mesoderm posterior bHLH transcription factor 2
RGD ID: 12283500
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN mesodermal cell migration (ortholog); Notch signaling pathway (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog); hepatocellular carcinoma (ortholog); spondylocostal dysostosis 1 (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mesoderm posterior 2 homolog; mesoderm posterior protein 2; MESP1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1352,757,581 - 52,759,987 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl352,756,836 - 52,760,004 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha355,391,161 - 55,393,462 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0353,173,970 - 53,176,273 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl353,173,970 - 53,176,717 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1352,695,769 - 52,698,068 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0352,905,716 - 52,908,057 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0353,246,094 - 53,248,395 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




References
Additional References at PubMed
PMID:22301074   PMID:25403511   PMID:30032202  


Genomics

Comparative Map Data
MESP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1352,757,581 - 52,759,987 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl352,756,836 - 52,760,004 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha355,391,161 - 55,393,462 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0353,173,970 - 53,176,273 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl353,173,970 - 53,176,717 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1352,695,769 - 52,698,068 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0352,905,716 - 52,908,057 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0353,246,094 - 53,248,395 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
MESP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381589,776,332 - 89,778,754 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1589,760,591 - 89,778,754 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371590,319,563 - 90,321,985 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361588,120,593 - 88,122,989 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1566,722,377 - 66,724,773 (+)NCBICelera
Cytogenetic Map15q26.1NCBI
HuRef1566,432,299 - 66,434,671 (+)NCBIHuRef
CHM1_11590,160,596 - 90,162,992 (+)NCBICHM1_1
T2T-CHM13v2.01587,532,244 - 87,534,642 (+)NCBIT2T-CHM13v2.0
Mesp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39779,460,475 - 79,463,179 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl779,460,475 - 79,463,187 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38779,810,727 - 79,813,431 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl779,810,727 - 79,813,439 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37786,955,613 - 86,958,317 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36779,684,240 - 79,686,946 (+)NCBIMGSCv36mm8
Celera777,209,936 - 77,212,640 (+)NCBICelera
Cytogenetic Map7D2NCBI
cM Map745.18NCBI
Mesp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81143,165,914 - 143,168,520 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1143,165,849 - 143,168,511 (+)EnsemblGRCr8
mRatBN7.21133,756,601 - 133,759,207 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,756,601 - 133,759,198 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1141,665,735 - 141,668,332 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01148,835,140 - 148,837,737 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01141,752,836 - 141,755,433 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1142,159,991 - 142,162,588 (+)NCBI
Lyon_Normotensive1147,098,440 - 147,101,037 (+)NCBI
Lyon_Hypertensive1143,758,261 - 143,760,858 (+)NCBI
F344_StmMcwi1142,296,809 - 142,299,406 (+)NCBI
Rnor_6.01141,550,633 - 141,553,239 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1141,550,633 - 141,553,230 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01142,511,695 - 142,514,301 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41135,590,020 - 135,592,626 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1125,819,906 - 125,822,512 (+)NCBICelera
RGSC_v3.11135,668,399 - 135,670,416 (+)NCBI
Cytogenetic Map1q31NCBI
Mesp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541615,448,377 - 15,450,800 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_00495541615,447,959 - 15,450,209 (-)NCBIChiLan1.0ChiLan1.0
MESP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21679,327,064 - 79,330,074 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11583,029,385 - 83,031,781 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01568,470,528 - 68,473,209 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11587,673,337 - 87,675,698 (+)NCBIPanPan1.1PanPan1.1panPan2
Mesp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap15136,178,982 - 136,181,546 (-)NCBImIctTri1.hap1
HiC_Itri_2NW_024408640130,777,038 - 130,779,436 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648315,555,084 - 15,557,060 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648315,555,084 - 15,557,060 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MESP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl755,342,935 - 55,345,879 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.1755,341,941 - 55,345,824 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2760,231,273 - 60,234,781 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MESP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap12916,609,367 - 16,611,704 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366605938,495,779 - 38,498,116 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1298,313,022 - 8,316,116 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Mesp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476816,832,008 - 16,834,697 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_00462476816,830,795 - 16,834,798 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Mesp2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12120,430,946 - 120,433,561 (-)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in MESP2
28 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
4 5 1 20 18 14 5 6 5 5 21 11 12 14 9

Sequence


Ensembl Acc Id: ENSCAFT00000043744   ⟹   ENSCAFP00000038772
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl352,756,836 - 52,760,004 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845000884   ⟹   ENSCAFP00845000664
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl353,173,970 - 53,176,717 (+)Ensembl
RefSeq Acc Id: XM_003434343   ⟹   XP_003434391
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1352,757,581 - 52,759,987 (+)NCBI
Dog10K_Boxer_Tasha355,391,161 - 55,393,462 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038471915   ⟹   XP_038327843
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1352,695,769 - 52,698,068 (+)NCBI
RefSeq Acc Id: XM_038532846   ⟹   XP_038388774
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0353,246,094 - 53,248,395 (+)NCBI
RefSeq Acc Id: XM_038597169   ⟹   XP_038453097
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0352,905,716 - 52,908,057 (+)NCBI
RefSeq Acc Id: XM_038661351   ⟹   XP_038517279
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0353,173,970 - 53,176,273 (+)NCBI
RefSeq Acc Id: XP_003434391   ⟸   XM_003434343
- Sequence:
Ensembl Acc Id: ENSCAFP00000038772   ⟸   ENSCAFT00000043744
RefSeq Acc Id: XP_038327843   ⟸   XM_038471915
RefSeq Acc Id: XP_038453097   ⟸   XM_038597169
RefSeq Acc Id: XP_038517279   ⟸   XM_038661351
- UniProtKB: A0A8I3MFU1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038388774   ⟸   XM_038532846
Ensembl Acc Id: ENSCAFP00845000664   ⟸   ENSCAFT00845000884
Protein Domains
bHLH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000032472 Ensembl
  ENSCAFG00845000550 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00845000884 ENTREZGENE
  ENSCAFT00845000884.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
  Mesogenin/MesP UniProtKB/TrEMBL
NCBI Gene MESP2 ENTREZGENE
PANTHER MESODERM POSTERIOR PROTEIN 2 UniProtKB/TrEMBL
  PTHR20937 UniProtKB/TrEMBL
Pfam HLH UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/TrEMBL
SMART HLH UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/TrEMBL
UniProt A0A8I3MFU1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:43164 ENTREZGENE