KPNA5 (karyopherin subunit alpha 5) - Rat Genome Database

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Gene: KPNA5 (karyopherin subunit alpha 5) Canis lupus familiaris
Analyze
Symbol: KPNA5
Name: karyopherin subunit alpha 5
RGD ID: 12273062
Description: ENCODES a protein that exhibits nuclear import signal receptor activity (inferred); INVOLVED IN protein import into nucleus (inferred); protein transport (inferred); ASSOCIATED WITH body dysmorphic disorder (ortholog); congenital disorder of glycosylation Iaa (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: importin subunit alpha-6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1157,112,204 - 57,154,865 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl157,112,224 - 57,151,583 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha157,907,273 - 57,949,971 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0157,294,023 - 57,336,743 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl157,294,065 - 57,335,906 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1157,188,413 - 57,231,132 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0157,036,569 - 57,079,253 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0157,665,312 - 57,708,014 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KPNA5Dogbody dysmorphic disorder  ISOKPNA5 (Homo sapiens)8554872ClinVar Annotator: match by term: Dysmorphic featuresClinVarPMID:24824130
KPNA5Dogcongenital disorder of glycosylation Iaa  ISOKPNA5 (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital disorder of glycosylation and type IAAClinVarPMID:28492532 more ...
KPNA5Dogintellectual disability  ISOKPNA5 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual functioning disabilityClinVarPMID:24824130
KPNA5Dogmicrocephaly  ISOKPNA5 (Homo sapiens)8554872ClinVar Annotator: match by term: MicrocephalyClinVarPMID:24824130
KPNA5Dogprimary ciliary dyskinesia  ISOKPNA5 (Homo sapiens)8554872ClinVar Annotator: match by term: Primary ciliary dyskinesiaClinVarPMID:28492532
KPNA5DogTremor  ISOKPNA5 (Homo sapiens)8554872ClinVar Annotator: match by term: TremorClinVarPMID:24824130


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KPNA5DogNLS-bearing protein import into nucleus involved_inIBAFB:FBgn0024889 more ...150520179 GO_CentralGO_REF:0000033
KPNA5Dogprotein import into nucleus involved_inIEAInterPro:IPR002652 more ...150520179 InterProGO_REF:0000002
KPNA5Dogprotein transport involved_inIEAUniProtKB-KW:KW-0653150520179 UniProtGO_REF:0000043

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KPNA5Dogcytoplasm located_inIEAInterPro:IPR024931150520179 InterProGO_REF:0000002
KPNA5Dogcytosol located_inIEAUniProtKB:O15131 and ensembl:ENSP00000357552150520179 EnsemblGO_REF:0000107
KPNA5Dognucleoplasm is_active_inIBAPANTHER:PTN001153232 more ...150520179 GO_CentralGO_REF:0000033
KPNA5Dognucleus is_active_inIBAFB:FBgn0287720 more ...150520179 GO_CentralGO_REF:0000033

PMID:22301074   PMID:30032202  



KPNA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1157,112,204 - 57,154,865 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl157,112,224 - 57,151,583 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha157,907,273 - 57,949,971 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0157,294,023 - 57,336,743 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl157,294,065 - 57,335,906 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1157,188,413 - 57,231,132 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0157,036,569 - 57,079,253 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0157,665,312 - 57,708,014 (+)NCBIUU_Cfam_GSD_1.0
KPNA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386116,681,211 - 116,741,867 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6116,681,187 - 116,741,867 (+)EnsemblGRCh38hg38GRCh38
GRCh376117,002,374 - 117,063,030 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366117,109,060 - 117,169,723 (+)NCBINCBI36Build 36hg18NCBI36
Build 346117,109,059 - 117,169,722NCBI
Celera6117,745,428 - 117,806,105 (+)NCBICelera
Cytogenetic Map6q22.1NCBI
HuRef6114,581,937 - 114,642,615 (+)NCBIHuRef
CHM1_16117,266,381 - 117,327,045 (+)NCBICHM1_1
T2T-CHM13v2.06117,864,908 - 117,925,542 (+)NCBIT2T-CHM13v2.0
Kpna5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82031,365,647 - 31,430,793 (+)NCBIGRCr8
mRatBN7.22030,822,925 - 30,888,080 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2030,822,935 - 30,888,078 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2031,837,952 - 31,895,888 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02031,228,872 - 31,286,808 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02031,965,252 - 32,019,823 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02032,509,573 - 32,573,591 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2032,509,598 - 32,572,250 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02034,293,492 - 34,357,497 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42030,137,916 - 30,197,532 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2032,243,955 - 32,300,694 (+)NCBICelera
Cytogenetic Map20q11NCBI
Kpna5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543648,303 - 102,447 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543648,880 - 102,447 (+)NCBIChiLan1.0ChiLan1.0
KPNA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25136,691,477 - 136,755,617 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16134,584,476 - 134,648,645 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06114,488,850 - 114,550,061 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16118,633,410 - 118,686,898 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6118,641,551 - 118,684,486 (+)Ensemblpanpan1.1panPan2
Kpna5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946107,833,199 - 107,893,835 (+)NCBIHiC_Itri_2
KPNA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl144,900,497 - 44,938,947 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1144,900,495 - 44,941,219 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2150,174,005 - 50,213,653 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KPNA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11357,080,862 - 57,134,653 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1357,080,084 - 57,134,154 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604029,414,984 - 29,468,748 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kpna5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479812,926,840 - 12,986,888 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479812,926,980 - 12,986,889 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in KPNA5
416 total Variants


Assembly: CanFam3.1

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
1 57132243 57132244 A T snv Australian Cattle dog (AC023), Dachshund (DH0117), Golden Retriever (GR0860), West Highland White Terrier (WW174), German Spitz (GS104), Shetland Sheepdog (SS004) View more Information
1 57140893 57140894 A G snv Chinese indigenous dogs (LJ5) View more Information




adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10


1 to 16 of 16 rows
RefSeq Transcripts XM_022419358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022419366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038465957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038465958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038526635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038526636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038590930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038590931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038654726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038654727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_541211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 16 of 16 rows

Ensembl Acc Id: ENSCAFT00000001405   ⟹   ENSCAFP00000001291
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl157,112,224 - 57,151,583 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845010179   ⟹   ENSCAFP00845007934
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl157,294,065 - 57,335,906 (+)Ensembl
RefSeq Acc Id: XM_022419358   ⟹   XP_022275066
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1157,112,965 - 57,154,865 (+)NCBI
Dog10K_Boxer_Tasha157,908,074 - 57,949,971 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038465957   ⟹   XP_038321885
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1157,188,413 - 57,231,132 (+)NCBI
RefSeq Acc Id: XM_038465958   ⟹   XP_038321886
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1157,189,213 - 57,231,132 (+)NCBI
RefSeq Acc Id: XM_038526635   ⟹   XP_038382563
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0157,665,312 - 57,708,014 (+)NCBI
RefSeq Acc Id: XM_038526636   ⟹   XP_038382564
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0157,666,111 - 57,708,014 (+)NCBI
RefSeq Acc Id: XM_038590930   ⟹   XP_038446858
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0157,036,569 - 57,079,253 (+)NCBI
RefSeq Acc Id: XM_038590931   ⟹   XP_038446859
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0157,037,360 - 57,079,253 (+)NCBI
RefSeq Acc Id: XM_038654726   ⟹   XP_038510654
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0157,294,023 - 57,336,743 (+)NCBI
RefSeq Acc Id: XM_038654727   ⟹   XP_038510655
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0157,294,827 - 57,336,743 (+)NCBI
RefSeq Acc Id: XM_541211   ⟹   XP_541211
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1157,112,204 - 57,154,865 (+)NCBI
Dog10K_Boxer_Tasha157,907,273 - 57,949,971 (+)NCBI
Sequence:
1 to 5 of 12 rows
1 to 5 of 12 rows
RefSeq Acc Id: XP_541211   ⟸   XM_541211
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PXI3 (UniProtKB/TrEMBL),   A0A8I3MUE3 (UniProtKB/TrEMBL),   A0A8C0LAS0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022275066   ⟸   XM_022419358
- Peptide Label: isoform X2
- UniProtKB: A0A8C0L9P2 (UniProtKB/TrEMBL),   A0A8C0LAS0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000001291   ⟸   ENSCAFT00000001405
RefSeq Acc Id: XP_038321885   ⟸   XM_038465957
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038321886   ⟸   XM_038465958
- Peptide Label: isoform X2
IBB

RGD ID:13682037
Promoter ID:EPDNEW_C105
Type:multiple initiation site
Name:KPNA5_1
Description:karyopherin subunit alpha 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1157,112,223 - 57,112,283EPDNEW


1 to 33 of 33 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCAFG00000000905 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030003657 UniProtKB/TrEMBL
  ENSCAFG00040003246 UniProtKB/TrEMBL
  ENSCAFG00845005742 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000001405.5 UniProtKB/TrEMBL
  ENSCAFT00030006838.1 UniProtKB/TrEMBL
  ENSCAFT00040006155.1 UniProtKB/TrEMBL
  ENSCAFT00845010179 ENTREZGENE
  ENSCAFT00845010179.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.690 UniProtKB/TrEMBL
  1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Arm_3 UniProtKB/TrEMBL
  Armadillo UniProtKB/TrEMBL
  Importin-a_IBB UniProtKB/TrEMBL
  Importin-a_IBB_sf UniProtKB/TrEMBL
  Importin_alpha UniProtKB/TrEMBL
NCBI Gene KPNA5 ENTREZGENE
PANTHER IMPORTIN ALPHA UniProtKB/TrEMBL
Pfam Arm UniProtKB/TrEMBL
  Arm_3 UniProtKB/TrEMBL
  IBB UniProtKB/TrEMBL
PIRSF Importin_alpha UniProtKB/TrEMBL
PROSITE ARM_REPEAT UniProtKB/TrEMBL
  IBB UniProtKB/TrEMBL
SMART ARM UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C0L9P2 ENTREZGENE
  A0A8C0LAS0 ENTREZGENE
  A0A8C0PXI3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MUE3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:42503 ENTREZGENE
1 to 33 of 33 rows