P2RY13 (purinergic receptor P2Y13) - Rat Genome Database

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Gene: P2RY13 (purinergic receptor P2Y13) Canis lupus familiaris
Analyze
Symbol: P2RY13
Name: purinergic receptor P2Y13
RGD ID: 12265189
Description: ENCODES a protein that exhibits G protein-coupled purinergic nucleotide receptor activity (ortholog); INVOLVED IN cellular response to organic cyclic compound (ortholog); ASSOCIATED WITH genetic disease (ortholog); glycogen storage disease XV (ortholog); FOUND IN endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: P2Y purinoceptor 13; purinergic receptor P2Y, G-protein coupled, 13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12345,898,698 - 45,902,047 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2345,900,483 - 45,902,030 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2345,763,512 - 45,766,885 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02346,525,353 - 46,528,724 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12346,114,388 - 46,117,752 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02346,166,631 - 46,170,018 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02346,443,564 - 46,446,356 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
P2RY13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12345,898,698 - 45,902,047 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2345,900,483 - 45,902,030 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2345,763,512 - 45,766,885 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02346,525,353 - 46,528,724 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12346,114,388 - 46,117,752 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02346,166,631 - 46,170,018 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02346,443,564 - 46,446,356 (-)NCBIUU_Cfam_GSD_1.0
P2RY13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383151,326,312 - 151,329,549 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3151,326,312 - 151,329,549 (-)EnsemblGRCh38hg38GRCh38
GRCh373151,044,100 - 151,047,337 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363152,526,786 - 152,530,025 (-)NCBINCBI36Build 36hg18NCBI36
Celera3149,456,806 - 149,460,047 (-)NCBICelera
Cytogenetic Map3q25.1NCBI
HuRef3148,417,288 - 148,420,529 (-)NCBIHuRef
CHM1_13151,007,208 - 151,010,449 (-)NCBICHM1_1
T2T-CHM13v2.03154,077,312 - 154,080,550 (-)NCBIT2T-CHM13v2.0
P2ry13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39359,115,313 - 59,118,303 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl359,115,313 - 59,118,303 (-)EnsemblGRCm39 Ensembl
GRCm38359,207,892 - 59,210,882 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl359,207,892 - 59,210,882 (-)EnsemblGRCm38mm10GRCm38
MGSCv37359,011,814 - 59,014,804 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36359,295,835 - 59,298,811 (-)NCBIMGSCv36mm8
Celera358,895,073 - 58,898,063 (-)NCBICelera
Cytogenetic Map3DNCBI
cM Map329.01NCBI
P2ry13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82145,620,321 - 145,624,730 (-)NCBIGRCr8
mRatBN7.22143,470,437 - 143,476,360 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2143,470,425 - 143,473,434 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2150,110,222 - 150,111,232 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02148,223,511 - 148,224,521 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02142,855,923 - 142,856,933 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02149,429,648 - 149,432,864 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2149,430,854 - 149,432,106 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02168,848,655 - 168,849,665 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42148,600,612 - 148,601,622 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12148,550,574 - 148,551,585 (-)NCBI
Celera2137,896,430 - 137,897,440 (-)NCBICelera
Cytogenetic Map2q26NCBI
P2ry13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554482,433,815 - 2,437,910 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554482,434,242 - 2,437,371 (-)NCBIChiLan1.0ChiLan1.0
P2RY13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22149,224,753 - 149,227,989 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13149,227,097 - 149,232,723 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03148,353,634 - 148,356,897 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13155,923,818 - 155,927,088 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3155,925,495 - 155,940,475 (-)Ensemblpanpan1.1panPan2
P2ry13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560290,192,574 - 90,195,278 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367581,573,459 - 1,574,466 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367581,573,366 - 1,574,495 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
P2RY13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1391,507,276 - 91,513,181 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11391,509,441 - 91,513,687 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21399,784,569 - 99,785,868 (-)NCBISscrofa10.2Sscrofa10.2susScr3
P2RY13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11539,368,984 - 39,372,731 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1539,369,458 - 39,373,014 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604112,186,189 - 12,189,003 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
P2ry13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473028,765,892 - 28,766,908 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473028,764,322 - 28,767,458 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in P2RY13
63 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 6
Low 3 1 21 6 6 6 12 9 6
Below cutoff 2 4 1 6 8 1

Sequence


RefSeq Acc Id: ENSCAFT00000013537   ⟹   ENSCAFP00000012527
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2345,900,483 - 45,902,030 (-)Ensembl
RefSeq Acc Id: XM_005634568   ⟹   XP_005634625
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12345,898,698 - 45,902,047 (-)NCBI
Dog10K_Boxer_Tasha2345,763,512 - 45,766,882 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005634569   ⟹   XP_005634626
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12345,898,698 - 45,902,039 (-)NCBI
Dog10K_Boxer_Tasha2345,763,512 - 45,766,885 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038432688   ⟹   XP_038288616
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02346,525,353 - 46,528,721 (-)NCBI
RefSeq Acc Id: XM_038432689   ⟹   XP_038288617
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02346,525,353 - 46,528,724 (-)NCBI
RefSeq Acc Id: XM_038507987   ⟹   XP_038363915
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12346,114,388 - 46,117,749 (-)NCBI
RefSeq Acc Id: XM_038507988   ⟹   XP_038363916
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12346,114,388 - 46,117,752 (-)NCBI
RefSeq Acc Id: XM_038571232   ⟹   XP_038427160
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02346,443,564 - 46,446,356 (-)NCBI
RefSeq Acc Id: XM_038635419   ⟹   XP_038491347
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02346,166,631 - 46,170,015 (-)NCBI
RefSeq Acc Id: XM_038635420   ⟹   XP_038491348
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02346,166,631 - 46,170,018 (-)NCBI
RefSeq Acc Id: XP_005634625   ⟸   XM_005634568
- UniProtKB: A0A8C0JWW5 (UniProtKB/TrEMBL),   A0A8C0SJ78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005634626   ⟸   XM_005634569
- UniProtKB: A0A8C0JWW5 (UniProtKB/TrEMBL),   A0A8C0SJ78 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000012527   ⟸   ENSCAFT00000013537
RefSeq Acc Id: XP_038363916   ⟸   XM_038507988
RefSeq Acc Id: XP_038363915   ⟸   XM_038507987
RefSeq Acc Id: XP_038491348   ⟸   XM_038635420
RefSeq Acc Id: XP_038491347   ⟸   XM_038635419
RefSeq Acc Id: XP_038288617   ⟸   XM_038432689
- UniProtKB: A0A8C0JWW5 (UniProtKB/TrEMBL),   A0A8C0SJ78 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038288616   ⟸   XM_038432688
- UniProtKB: A0A8C0JWW5 (UniProtKB/TrEMBL),   A0A8C0SJ78 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038427160   ⟸   XM_038571232
- UniProtKB: A0A8C0JWW5 (UniProtKB/TrEMBL),   A0A8C0SJ78 (UniProtKB/TrEMBL)

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000008531 Ensembl
  ENSCAFG00030011750 UniProtKB/TrEMBL
  ENSCAFG00040013427 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030021729.1 UniProtKB/TrEMBL
  ENSCAFT00040024781.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  P2Y13_rcpt UniProtKB/TrEMBL
NCBI Gene P2RY13 ENTREZGENE
PANTHER P2Y PURINOCEPTOR 13 UniProtKB/TrEMBL
  P2Y PURINOCEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  P2Y13PRNCPTR UniProtKB/TrEMBL
  P2YPURNOCPTR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0JWW5 ENTREZGENE
  A0A8C0SJ78 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:44215 ENTREZGENE