P2ry13 (purinergic receptor P2Y, G-protein coupled 13) - Rat Genome Database

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Gene: P2ry13 (purinergic receptor P2Y, G-protein coupled 13) Mus musculus
Analyze
Symbol: P2ry13
Name: purinergic receptor P2Y, G-protein coupled 13
RGD ID: 1551996
MGI Page MGI
Description: Predicted to enable G protein-coupled purinergic nucleotide receptor activity. Acts upstream of or within cellular response to organic cyclic compound. Located in endoplasmic reticulum. Is expressed in immune system; intestine; male reproductive gland or organ; and skin. Orthologous to human P2RY13 (purinergic receptor P2Y13).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2010001L06Rik; G protein-coupled receptor 68; G protein-coupled receptor 86; G-protein coupled receptor 86; GPCR1; Gpr; Gpr86; GPR94; P2Y purinoceptor 13; P2Y1; P2Y13; P2yr13; purinergic receptor P2Y13; SP1; SP174; Vpurinergic receptor P2Y, G-protein coupled 13
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39359,115,313 - 59,118,303 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl359,115,313 - 59,118,303 (-)EnsemblGRCm39 Ensembl
GRCm38359,207,892 - 59,210,882 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl359,207,892 - 59,210,882 (-)EnsemblGRCm38mm10GRCm38
MGSCv37359,011,814 - 59,014,804 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36359,295,835 - 59,298,811 (-)NCBIMGSCv36mm8
Celera358,895,073 - 58,898,063 (-)NCBICelera
Cytogenetic Map3DNCBI
cM Map329.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11961076   PMID:12477932   PMID:16141072   PMID:16141073   PMID:16336229   PMID:16602821   PMID:16843602   PMID:19359471  
PMID:19549686   PMID:19915796   PMID:20398327   PMID:20447456   PMID:20526761   PMID:20817122   PMID:20830789   PMID:20952684   PMID:21267068   PMID:21413988   PMID:21873635   PMID:22108801  
PMID:22250198   PMID:22521313   PMID:23266391   PMID:23362109   PMID:23479225   PMID:23629754   PMID:24030815   PMID:24194600   PMID:24487286   PMID:24510452   PMID:24769858   PMID:25770145  
PMID:27058149   PMID:27721240   PMID:28800362   PMID:29867367   PMID:31520551   PMID:34860143   PMID:38355793   PMID:38470490  


Genomics

Comparative Map Data
P2ry13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39359,115,313 - 59,118,303 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl359,115,313 - 59,118,303 (-)EnsemblGRCm39 Ensembl
GRCm38359,207,892 - 59,210,882 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl359,207,892 - 59,210,882 (-)EnsemblGRCm38mm10GRCm38
MGSCv37359,011,814 - 59,014,804 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36359,295,835 - 59,298,811 (-)NCBIMGSCv36mm8
Celera358,895,073 - 58,898,063 (-)NCBICelera
Cytogenetic Map3DNCBI
cM Map329.01NCBI
P2RY13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383151,326,312 - 151,329,549 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3151,326,312 - 151,329,549 (-)EnsemblGRCh38hg38GRCh38
GRCh373151,044,100 - 151,047,337 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363152,526,786 - 152,530,025 (-)NCBINCBI36Build 36hg18NCBI36
Celera3149,456,806 - 149,460,047 (-)NCBICelera
Cytogenetic Map3q25.1NCBI
HuRef3148,417,288 - 148,420,529 (-)NCBIHuRef
CHM1_13151,007,208 - 151,010,449 (-)NCBICHM1_1
T2T-CHM13v2.03154,077,312 - 154,080,550 (-)NCBIT2T-CHM13v2.0
P2ry13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82145,620,321 - 145,624,730 (-)NCBIGRCr8
mRatBN7.22143,470,437 - 143,476,360 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2143,470,425 - 143,473,434 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2150,110,222 - 150,111,232 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02148,223,511 - 148,224,521 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02142,855,923 - 142,856,933 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02149,429,648 - 149,432,864 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2149,430,854 - 149,432,106 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02168,848,655 - 168,849,665 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42148,600,612 - 148,601,622 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12148,550,574 - 148,551,585 (-)NCBI
Celera2137,896,430 - 137,897,440 (-)NCBICelera
Cytogenetic Map2q26NCBI
P2ry13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554482,433,815 - 2,437,910 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554482,434,242 - 2,437,371 (-)NCBIChiLan1.0ChiLan1.0
P2RY13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22149,224,753 - 149,227,989 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13149,227,097 - 149,232,723 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03148,353,634 - 148,356,897 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13155,923,818 - 155,927,088 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3155,925,495 - 155,940,475 (-)Ensemblpanpan1.1panPan2
P2RY13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12345,898,698 - 45,902,047 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2345,900,483 - 45,902,030 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2345,763,512 - 45,766,885 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02346,525,353 - 46,528,724 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12346,114,388 - 46,117,752 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02346,166,631 - 46,170,018 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02346,443,564 - 46,446,356 (-)NCBIUU_Cfam_GSD_1.0
P2ry13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560290,192,574 - 90,195,278 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367581,573,459 - 1,574,466 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367581,573,366 - 1,574,495 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
P2RY13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1391,507,276 - 91,513,181 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11391,509,441 - 91,513,687 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21399,784,569 - 99,785,868 (-)NCBISscrofa10.2Sscrofa10.2susScr3
P2RY13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11539,368,984 - 39,372,731 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1539,369,458 - 39,373,014 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604112,186,189 - 12,189,003 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
P2ry13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473028,765,892 - 28,766,908 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473028,764,322 - 28,767,458 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in P2ry13
130 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:485
Count of miRNA genes:334
Interacting mature miRNAs:385
Transcripts:ENSMUST00000040622
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
14746977Manh53_mmandible shape 53 (mouse)33592528069925280Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
15039332Nmrs6_mNAFLD-associated magnetic resonance shift 6 (mouse)33417074168170741Mouse
1301585Cd4ts1_mCD4 T cell subset 1 (mouse)Not determined33970410273704231Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11041901Lmr11b_mleishmaniasis resistance 11b (mouse)33970410273704231Mouse
1357585Manln3_mmandible length 3 (mouse)Not determined35262550986625745Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
13464139Nhdlq17_mnon-HDL QTL 17 (mouse)35292318386923183Mouse
1300895Hdl5_mHDL level 5 (mouse)Not determined34949500583495118Mouse
15039336Nmrs2_mNAFLD-associated magnetic resonance shift 2 (mouse)33457610368576103Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1301917Tshp4_mtooth shape 4 (mouse)Not determined35262550986625745Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
1301824Susp_msuppressor of superoxide production (mouse)Not determined34949500583495118Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
10755516Amzn1_manatomical modifier of Zfp423 1 (mouse)33970410273704231Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
9587784Afw13_mabdominal fat weight QTL 13 (mouse)Not determined33375204567752228Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1300593Skull4_mskull morphology 4 (mouse)Not determined35262550986625745Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
4141079Ath23_matherosclerosis 23 (mouse)Not determined4935758183357581Mouse
18337272Bmd46_mbone mineral density 46, males (mouse)33540742169407421Mouse
11039513Ltpr3a_mLeishmania tropica response 3a (mouse)33970410273704231Mouse
1300961Bh4p_mbar holding four paws (mouse)Not determined33183785465837997Mouse
10043882Bwtq13_mbody weight QTL 13 (mouse)Not determined33375204567752228Mouse
10412073Ssen2_msuseptibility to Sendai virus 2 (mouse)Not determined33353546567535615Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
1300587Aod2_mautoimmune ovarian dysgenesis 2 (mouse)Not determined33717974268716946Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
26884389Skwq10_mskull length QTL 10, 16 week (mouse)34395443565307421Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000040622   ⟹   ENSMUSP00000044730
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl359,115,313 - 59,118,303 (-)Ensembl
GRCm38.p6 Ensembl359,207,892 - 59,210,882 (-)Ensembl
RefSeq Acc Id: NM_028808   ⟹   NP_083084
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39359,115,313 - 59,118,303 (-)NCBI
GRCm38359,207,892 - 59,210,882 (-)ENTREZGENE
MGSCv37359,011,814 - 59,014,804 (-)RGD
Celera358,895,073 - 58,898,063 (-)RGD
cM Map3 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_083084 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI19044 (Get FASTA)   NCBI Sequence Viewer  
  BAB25409 (Get FASTA)   NCBI Sequence Viewer  
  BAC30043 (Get FASTA)   NCBI Sequence Viewer  
  BAC38835 (Get FASTA)   NCBI Sequence Viewer  
  EDL35356 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000044730
  ENSMUSP00000044730.2
GenBank Protein Q9D8I2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_083084   ⟸   NM_028808
- UniProtKB: Q8C412 (UniProtKB/Swiss-Prot),   Q0VF10 (UniProtKB/Swiss-Prot),   Q8CAL2 (UniProtKB/Swiss-Prot),   Q9D8I2 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000044730   ⟸   ENSMUST00000040622

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D8I2-F1-model_v2 AlphaFold Q9D8I2 1-337 view protein structure

Promoters
RGD ID:6880738
Promoter ID:EPDNEW_M3820
Type:multiple initiation site
Name:P2ry13_1
Description:Mus musculus purinergic receptor P2Y, G-protein coupled 13 ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38359,210,882 - 59,210,942EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921441 AgrOrtholog
Ensembl Genes ENSMUSG00000036362 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000040622 ENTREZGENE
  ENSMUST00000040622.3 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  P2Y13_rcpt UniProtKB/Swiss-Prot
KEGG Report mmu:74191 UniProtKB/Swiss-Prot
MGD MGI:1921441 ENTREZGENE
NCBI Gene 74191 ENTREZGENE
PANTHER P2Y PURINOCEPTOR 13 UniProtKB/Swiss-Prot
  P2Y PURINOCEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR UniProtKB/Swiss-Prot
Pfam 7tm_1 UniProtKB/Swiss-Prot
PhenoGen P2ry13 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot
  P2Y13PRNCPTR UniProtKB/Swiss-Prot
  P2YPURNOCPTR UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
UniProt P2Y13_MOUSE UniProtKB/Swiss-Prot
  Q0VF10 ENTREZGENE
  Q8C412 ENTREZGENE
  Q8CAL2 ENTREZGENE
  Q9D8I2 ENTREZGENE
UniProt Secondary Q0VF10 UniProtKB/Swiss-Prot
  Q8C412 UniProtKB/Swiss-Prot
  Q8CAL2 UniProtKB/Swiss-Prot