IGFBPL1 (insulin like growth factor binding protein like 1) - Rat Genome Database

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Gene: IGFBPL1 (insulin like growth factor binding protein like 1) Canis lupus familiaris
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Symbol: IGFBPL1
Name: insulin like growth factor binding protein like 1
RGD ID: 12260776
Description: ENCODES a protein that exhibits insulin-like growth factor binding (inferred); INVOLVED IN cellular response to tumor cell (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN collagen-containing extracellular matrix (inferred); extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: insulin-like growth factor-binding protein-like 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11154,586,337 - 54,596,218 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1153,014,367 - 53,031,635 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01155,697,563 - 55,714,916 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11154,195,261 - 54,212,589 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01154,225,342 - 54,242,612 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01154,921,804 - 54,939,126 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
IGFBPL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11154,586,337 - 54,596,218 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1153,014,367 - 53,031,635 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01155,697,563 - 55,714,916 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11154,195,261 - 54,212,589 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01154,225,342 - 54,242,612 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01154,921,804 - 54,939,126 (-)NCBIUU_Cfam_GSD_1.0
IGFBPL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38938,406,528 - 38,424,454 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl938,406,528 - 38,424,454 (-)EnsemblGRCh38hg38GRCh38
GRCh37938,406,525 - 38,424,451 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36938,398,991 - 38,414,444 (-)NCBINCBI36Build 36hg18NCBI36
Celera938,341,932 - 38,357,387 (-)NCBICelera
Cytogenetic Map9p13.1NCBI
HuRef938,358,896 - 38,376,765 (-)NCBIHuRef
CHM1_1938,408,294 - 38,426,200 (-)NCBICHM1_1
T2T-CHM13v2.0938,430,707 - 38,448,634 (-)NCBIT2T-CHM13v2.0
Igfbpl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39445,809,507 - 45,826,827 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl445,809,468 - 45,826,923 (-)EnsemblGRCm39 Ensembl
GRCm38445,809,507 - 45,826,827 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl445,809,468 - 45,826,923 (-)EnsemblGRCm38mm10GRCm38
MGSCv37445,822,379 - 45,839,699 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36445,819,642 - 45,847,915 (-)NCBIMGSCv36mm8
Celera445,834,027 - 45,851,532 (-)NCBICelera
Cytogenetic Map4B1NCBI
cM Map424.36NCBI
Igfbpl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8564,872,056 - 64,887,461 (-)NCBIGRCr8
mRatBN7.2560,076,428 - 60,091,833 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl560,076,429 - 60,091,833 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx562,051,012 - 62,066,418 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0563,870,525 - 63,885,933 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0563,839,761 - 63,855,167 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0561,395,407 - 61,410,812 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl561,395,408 - 61,410,812 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0565,911,663 - 65,927,068 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4562,324,324 - 62,339,729 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1562,324,510 - 62,339,761 (-)NCBI
Celera558,641,004 - 58,656,411 (-)NCBICelera
Cytogenetic Map5q22NCBI
Igfbpl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541928,133,527 - 28,144,578 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541928,133,512 - 28,148,462 (+)NCBIChiLan1.0ChiLan1.0
IGFBPL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21186,166,129 - 86,184,177 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1986,172,063 - 86,190,119 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0938,253,300 - 38,271,260 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1939,175,131 - 39,192,684 (-)NCBIpanpan1.1PanPan1.1panPan2
Igfbpl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947169,547,489 - 169,561,760 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365246,095,077 - 6,109,340 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IGFBPL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1239,120,618 - 239,136,369 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11239,120,617 - 239,136,387 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21267,174,650 - 267,190,426 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IGFBPL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11242,165,105 - 42,179,997 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1242,165,346 - 42,177,605 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603839,223,012 - 39,238,389 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Igfbpl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248253,513,796 - 3,529,351 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248253,513,720 - 3,530,479 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in IGFBPL1
141 total Variants

Expression


Sequence


RefSeq Acc Id: XM_038491207   ⟹   XP_038347135
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11154,195,261 - 54,212,589 (-)NCBI
RefSeq Acc Id: XM_038553291   ⟹   XP_038409219
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01154,921,804 - 54,939,126 (-)NCBI
RefSeq Acc Id: XM_038617177   ⟹   XP_038473105
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01154,225,342 - 54,242,612 (-)NCBI
RefSeq Acc Id: XM_038668237   ⟹   XP_038524165
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1153,014,367 - 53,031,635 (-)NCBI
RefSeq Acc Id: XM_038682628   ⟹   XP_038538556
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01155,697,563 - 55,714,916 (-)NCBI
RefSeq Acc Id: XP_038347135   ⟸   XM_038491207
RefSeq Acc Id: XP_038473105   ⟸   XM_038617177
RefSeq Acc Id: XP_038538556   ⟸   XM_038682628
- UniProtKB: A0A8C0KZU2 (UniProtKB/TrEMBL),   A0A8C0SVN5 (UniProtKB/TrEMBL),   A0A8I3NGR1 (UniProtKB/TrEMBL),   A0A8C0RD17 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038524165   ⟸   XM_038668237
- UniProtKB: A0A8C0KZU2 (UniProtKB/TrEMBL),   A0A8C0SVN5 (UniProtKB/TrEMBL),   A0A8I3NGR1 (UniProtKB/TrEMBL),   A0A8C0RD17 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038409219   ⟸   XM_038553291
- UniProtKB: A0A8C0KZU2 (UniProtKB/TrEMBL),   A0A8C0RD17 (UniProtKB/TrEMBL),   A0A8C0SVN5 (UniProtKB/TrEMBL),   A0A8I3NGR1 (UniProtKB/TrEMBL)
Protein Domains
Ig-like   IGFBP N-terminal   Kazal-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000053732 UniProtKB/TrEMBL
  ENSCAFG00030005173 UniProtKB/TrEMBL
  ENSCAFG00040016933 UniProtKB/TrEMBL
  ENSCAFG00845014114 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000097974.1 UniProtKB/TrEMBL
  ENSCAFT00030009468.1 UniProtKB/TrEMBL
  ENSCAFT00040031238.1 UniProtKB/TrEMBL
  ENSCAFT00845025233 ENTREZGENE
  ENSCAFT00845025233.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.30.60.30 UniProtKB/TrEMBL
  4.10.40.20 UniProtKB/TrEMBL
InterPro Growth_fac_rcpt_cys_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  IGFBP-like UniProtKB/TrEMBL
  IGFBP_rP_mac25 UniProtKB/TrEMBL
  Kazal_dom UniProtKB/TrEMBL
  Kazal_dom_sf UniProtKB/TrEMBL
NCBI Gene IGFBPL1 ENTREZGENE
PANTHER INSULIN-LIKE GROWTH FACTOR-BINDING PROTEIN-LIKE 1 UniProtKB/TrEMBL
  PTHR14186 UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
  IGFBP UniProtKB/TrEMBL
  Kazal_2 UniProtKB/TrEMBL
PIRSF IGFBP_rP_mac25 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  IGFBP_N_2 UniProtKB/TrEMBL
  KAZAL_2 UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  KAZAL UniProtKB/TrEMBL
  SM00121 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF100895 UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
UniProt A0A8C0KZU2 ENTREZGENE
  A0A8C0RD17 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SVN5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NGR1 ENTREZGENE, UniProtKB/TrEMBL