Igfbpl1 (insulin like growth factor binding protein like 1) - Rat Genome Database

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Gene: Igfbpl1 (insulin like growth factor binding protein like 1) Chinchilla lanigera
Analyze
Symbol: Igfbpl1
Name: insulin like growth factor binding protein like 1
RGD ID: 8757403
Description: INVOLVED IN cellular response to tumor cell (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: insulin-like growth factor binding protein-like 1; insulin-like growth factor-binding protein-like 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541928,133,527 - 28,144,578 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541928,133,512 - 28,148,462 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Igfbpl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541928,133,527 - 28,144,578 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541928,133,512 - 28,148,462 (+)NCBIChiLan1.0ChiLan1.0
IGFBPL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38938,406,528 - 38,424,454 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl938,406,528 - 38,424,454 (-)EnsemblGRCh38hg38GRCh38
GRCh37938,406,525 - 38,424,451 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36938,398,991 - 38,414,444 (-)NCBINCBI36Build 36hg18NCBI36
Celera938,341,932 - 38,357,387 (-)NCBICelera
Cytogenetic Map9p13.1NCBI
HuRef938,358,896 - 38,376,765 (-)NCBIHuRef
CHM1_1938,408,294 - 38,426,200 (-)NCBICHM1_1
T2T-CHM13v2.0938,430,707 - 38,448,634 (-)NCBIT2T-CHM13v2.0
Igfbpl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39445,809,507 - 45,826,827 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl445,809,468 - 45,826,923 (-)EnsemblGRCm39 Ensembl
GRCm38445,809,507 - 45,826,827 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl445,809,468 - 45,826,923 (-)EnsemblGRCm38mm10GRCm38
MGSCv37445,822,379 - 45,839,699 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36445,819,642 - 45,847,915 (-)NCBIMGSCv36mm8
Celera445,834,027 - 45,851,532 (-)NCBICelera
Cytogenetic Map4B1NCBI
cM Map424.36NCBI
Igfbpl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8564,872,056 - 64,887,461 (-)NCBIGRCr8
mRatBN7.2560,076,428 - 60,091,833 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl560,076,429 - 60,091,833 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx562,051,012 - 62,066,418 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0563,870,525 - 63,885,933 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0563,839,761 - 63,855,167 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0561,395,407 - 61,410,812 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl561,395,408 - 61,410,812 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0565,911,663 - 65,927,068 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4562,324,324 - 62,339,729 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1562,324,510 - 62,339,761 (-)NCBI
Celera558,641,004 - 58,656,411 (-)NCBICelera
Cytogenetic Map5q22NCBI
IGFBPL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21186,166,129 - 86,184,177 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1986,172,063 - 86,190,119 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0938,253,300 - 38,271,260 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1939,175,131 - 39,192,684 (-)NCBIpanpan1.1PanPan1.1panPan2
IGFBPL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11154,586,337 - 54,596,218 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1153,014,367 - 53,031,635 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01155,697,563 - 55,714,916 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11154,195,261 - 54,212,589 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01154,225,342 - 54,242,612 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01154,921,804 - 54,939,126 (-)NCBIUU_Cfam_GSD_1.0
Igfbpl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947169,547,489 - 169,561,760 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365246,095,077 - 6,109,340 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IGFBPL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1239,120,618 - 239,136,369 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11239,120,617 - 239,136,387 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21267,174,650 - 267,190,426 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IGFBPL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11242,165,105 - 42,179,997 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1242,165,346 - 42,177,605 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603839,223,012 - 39,238,389 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Igfbpl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248253,513,796 - 3,529,351 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248253,513,720 - 3,530,479 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000016406   ⟹   ENSCLAP00000016242
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541928,133,527 - 28,144,578 (+)Ensembl
RefSeq Acc Id: XM_013513091   ⟹   XP_013368545
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541928,133,512 - 28,148,462 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013368545 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016242
  ENSCLAP00000016242.1
Reference Protein Sequences
RefSeq Acc Id: XP_013368545   ⟸   XM_013513091
- Sequence:
RefSeq Acc Id: ENSCLAP00000016242   ⟸   ENSCLAT00000016406
Protein Domains
Ig-like   Kazal-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011178 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016406 ENTREZGENE
  ENSCLAT00000016406.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.30.60.30 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  IGFBP_rP_mac25 UniProtKB/TrEMBL
  Kazal_dom UniProtKB/TrEMBL
  Kazal_dom_sf UniProtKB/TrEMBL
NCBI Gene Igfbpl1 ENTREZGENE
PANTHER INSULIN-LIKE GROWTH FACTOR-BINDING PROTEIN-LIKE 1 UniProtKB/TrEMBL
  PTHR14186 UniProtKB/TrEMBL
Pfam Ig_3 UniProtKB/TrEMBL
  Kazal_2 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  KAZAL_2 UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  KAZAL UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF100895 UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A0A8C2VQZ1_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Igfbpl1  insulin like growth factor binding protein like 1    insulin-like growth factor binding protein-like 1  Symbol and/or name change 5135510 APPROVED