SH3PXD2B (SH3 and PX domains 2B) - Rat Genome Database

Name: SH3PXD2B
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: SH3PXD2B (SH3 and PX domains 2B) Canis lupus familiaris

Analyze

Symbol:

SH3PXD2B

Name:

SH3 and PX domains 2B

RGD ID:

12244631

Description:

ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); INVOLVED IN adipose tissue development (ortholog); cranial skeletal system development (ortholog); osteoblast fate commitment (ortholog); ASSOCIATED WITH angle-closure glaucoma (ortholog); Animal Disease Models (ortholog); atrial heart septal defect 7 (ortholog); FOUND IN anchoring junction (inferred); cell projection (inferred); cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SH3 and PX domain-containing protein 2B

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SH3PXD2B (SH3 and PX domains 2B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Sh3pxd2b (SH3 and PX domains 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Sh3pxd2b (SH3 and PX domains 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sh3pxd2b (SH3 and PX domains 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SH3PXD2B (SH3 and PX domains 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sh3pxd2b (SH3 and PX domains 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SH3PXD2B (SH3 and PX domains 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SH3PXD2B (SH3 and PX domains 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sh3pxd2b (SH3 and PX domains 2B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	39,854,213 - 39,950,704 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	39,854,211 - 39,949,958 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	39,798,319 - 39,901,983 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	40,225,207 - 40,326,590 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	40,225,205 - 40,322,450 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	40,040,426 - 40,144,103 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	40,229,786 - 40,330,413 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	40,740,272 - 40,843,969 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

angle-closure glaucoma (ISO)

Animal Disease Models (ISO)

atrial heart septal defect 7 (ISO)

Atrial Septal Defect with Atrioventricular Conduction Defects (ISO)

bone development disease (ISO)

COVID-19 (ISO)

Craniofacial Abnormalities (ISO)

Eye Abnormalities (ISO)

Frank-Ter Haar syndrome (ISO)

genetic disease (ISO)

glaucoma (ISO)

Growth Disorders (ISO)

Hearing Loss (ISO)

ocular hypertension (ISO)

otitis media (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adipose tissue development (ISO)

bone development (IEA)

cranial skeletal system development (ISO)

extracellular matrix disassembly (IEA)

eye development (IEA)

heart development (IEA)

osteoblast fate commitment (ISO)

podosome assembly (ISO)

positive regulation of adipose tissue development (ISO)

positive regulation of fat cell differentiation (ISO)

positive regulation of gene expression (ISO)

positive regulation of multicellular organism growth (ISO)

positive regulation of stress fiber assembly (ISO)

protein localization to membrane (IEA)

regulation of brood size (ISO)

skeletal system development (IEA)

skeletal system morphogenesis (ISO)

superoxide metabolic process (IEA)

Cellular Component

anchoring junction (IEA)

cell projection (IEA)

cytoplasm (IEA)

podosome (IEA)

Molecular Function

phosphatidylinositol binding (IEA)

phosphatidylinositol-3,5-bisphosphate binding (ISO)

phosphatidylinositol-3-phosphate binding (ISO)

phosphatidylinositol-4-phosphate binding (ISO)

phosphatidylinositol-5-phosphate binding (ISO)

protein binding (ISO)

SH2 domain binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202	PMID:37756605

Genomics

Comparative Map Data

SH3PXD2B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	39,854,213 - 39,950,704 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	39,854,211 - 39,949,958 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	39,798,319 - 39,901,983 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	40,225,207 - 40,326,590 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	40,225,205 - 40,322,450 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	40,040,426 - 40,144,103 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	40,229,786 - 40,330,413 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	40,740,272 - 40,843,969 (+)	NCBI		UU_Cfam_GSD_1.0

SH3PXD2B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	172,325,181 - 172,454,525 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	172,325,000 - 172,454,525 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	171,752,185 - 171,881,529 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	171,693,108 - 171,814,132 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	167,792,626 - 167,913,367 (-)	NCBI		Celera
Cytogenetic Map	5	q35.1	NCBI
HuRef	5	166,855,971 - 166,956,421 (-)	NCBI		HuRef
CHM1_1	5	171,193,488 - 171,314,268 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	172,865,440 - 172,994,533 (-)	NCBI		T2T-CHM13v2.0

Sh3pxd2b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	32,297,777 - 32,378,189 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	32,297,820 - 32,378,173 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	32,347,773 - 32,428,189 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	32,347,820 - 32,428,173 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	32,247,811 - 32,328,183 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	32,247,811 - 32,328,183 (+)	NCBI		MGSCv36	mm8
Celera	11	34,765,291 - 34,845,918 (+)	NCBI		Celera
Cytogenetic Map	11	A4	NCBI
cM Map	11	18.89	NCBI

Sh3pxd2b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	17,422,906 - 17,538,977 (+)	NCBI		GRCr8
mRatBN7.2	10	16,918,611 - 17,027,499 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	16,918,679 - 17,005,170 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	21,668,750 - 21,754,134 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	21,157,348 - 21,242,732 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	16,646,426 - 16,733,437 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	17,209,152 - 17,296,449 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	17,209,212 - 17,291,876 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	17,104,796 - 17,192,048 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	17,184,256 - 17,265,186 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	16,569,377 - 16,655,161 (+)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

Sh3pxd2b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	25,103,278 - 25,170,003 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	25,103,278 - 25,169,934 (-)	NCBI	ChiLan1.0	ChiLan1.0

SH3PXD2B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	167,466,205 - 167,595,920 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	165,605,597 - 165,735,443 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	167,678,633 - 167,807,960 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	174,599,996 - 174,719,951 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	174,591,759 - 174,719,957 (-)	Ensembl	panpan1.1		panPan2

Sh3pxd2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	94,204,073 - 94,256,232 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936609	2,926,771 - 2,978,914 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936609	2,934,814 - 2,975,111 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SH3PXD2B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	51,733,135 - 51,858,772 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	51,733,170 - 51,858,774 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	56,105,843 - 56,228,717 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SH3PXD2B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	74,498,389 - 74,613,296 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	74,498,381 - 74,613,123 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	4,001,985 - 4,124,148 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sh3pxd2b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	17,577,336 - 17,688,155 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	17,577,262 - 17,686,212 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SH3PXD2B
789 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038473668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038473669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038473670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038494917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038494926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038534749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038534750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038534751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038599049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038599050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038599051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038663352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038663353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038663354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_546237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000026637 ⟹ ENSCAFP00000024743

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	4	39,876,981 - 39,949,958 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000059723 ⟹ ENSCAFP00000054676

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	4	39,894,461 - 39,949,958 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000064091 ⟹ ENSCAFP00000061217

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	4	39,854,211 - 39,949,958 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000071925 ⟹ ENSCAFP00000063235

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	4	39,883,744 - 39,949,958 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000091284 ⟹ ENSCAFP00000061747

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	4	39,894,461 - 39,949,958 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845001865 ⟹ ENSCAFP00845001469

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	4	40,225,205 - 40,322,450 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845001874 ⟹ ENSCAFP00845001474

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	4	40,225,205 - 40,322,450 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845001896 ⟹ ENSCAFP00845001491

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	4	40,248,004 - 40,322,450 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845001920 ⟹ ENSCAFP00845001509

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	4	40,265,298 - 40,322,450 (+)	Ensembl

RefSeq Acc Id:

XM_038473668 ⟹ XP_038329596

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	4	40,040,426 - 40,144,103 (+)	NCBI

RefSeq Acc Id:

XM_038473669 ⟹ XP_038329597

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	4	40,063,186 - 40,144,103 (+)	NCBI

RefSeq Acc Id:

XM_038473670 ⟹ XP_038329598

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	4	40,040,426 - 40,144,103 (+)	NCBI

RefSeq Acc Id:

XM_038494917 ⟹ XP_038350845

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	4	39,821,081 - 39,901,983 (+)	NCBI

RefSeq Acc Id:

XM_038494926 ⟹ XP_038350854

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	4	39,798,319 - 39,901,983 (+)	NCBI

RefSeq Acc Id:

XM_038534749 ⟹ XP_038390677

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	4	40,740,272 - 40,843,969 (+)	NCBI

RefSeq Acc Id:

XM_038534750 ⟹ XP_038390678

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	4	40,763,028 - 40,843,969 (+)	NCBI

RefSeq Acc Id:

XM_038534751 ⟹ XP_038390679

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	4	40,740,272 - 40,843,969 (+)	NCBI

RefSeq Acc Id:

XM_038599049 ⟹ XP_038454977

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	4	40,229,786 - 40,330,413 (+)	NCBI

RefSeq Acc Id:

XM_038599050 ⟹ XP_038454978

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	4	40,252,536 - 40,330,413 (+)	NCBI

RefSeq Acc Id:

XM_038599051 ⟹ XP_038454979

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	4	40,229,786 - 40,330,413 (+)	NCBI

RefSeq Acc Id:

XM_038663352 ⟹ XP_038519280

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	4	40,225,207 - 40,326,590 (+)	NCBI

RefSeq Acc Id:

XM_038663353 ⟹ XP_038519281

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	4	40,247,955 - 40,326,590 (+)	NCBI

RefSeq Acc Id:

XM_038663354 ⟹ XP_038519282

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	4	40,225,207 - 40,326,590 (+)	NCBI

RefSeq Acc Id:

XM_546237 ⟹ XP_546237

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	4	39,854,213 - 39,950,704 (+)	NCBI
Dog10K_Boxer_Tasha	4	39,798,319 - 39,901,983 (+)	NCBI

Sequence:

show sequence

CGGCGCAGCATCGTGGAGGTGAAGGTGCTGGACGTGCAGAAGCGGCGGGTGCCCAACAAGCATT
ATGTCTATATCATCCGGGTTACGTGGTCCAGCGGCTCCACGGAGGCCATTTACCGGCGCTACAG
CAAGTTCTTTGACCTCCAGATGCAGATGTTGGACAAATTTCCCATGGAAGGAGGGCAGAAGGAC
CCCAAACAGCGGATCATTCCCTTTCTGCCAGGCAAAATTCTCTTCCGACGAAGCCACATCCGGG
ATGTGGCAGTCAAACGCCTGATACCGATTGATGAGTACTGTAAGGCCCTGATCCAGCTGCCCCC
CTATATCTCTCAGTGTGATGAGGTGCTGCAGTTCTTTGAGACAAGACCTGAGGACCTGAATCCC
CCCAAAGAGGAGCATGTTGGGAAAAAGAAATCTGGGGGTGACCTGACCTCAGTGGACCCCATGG
TCCTGGAGCAGTACGTGGTGGTAGCAGACTACCAGAAGCAGGAGAGCTCGGAGATCAGCCTCAG
TGTGGGGCAGGTGGTGGACATCATCGAGAAGAATGAGTCAGGTTGGTGGTTCGTCAGCACAGCC
GAAGAGCAAGGCTGGGTCCCCGCAACCTGCCTGGAAGGGCAGGATGGTATGCAGGATGAGTTTT
CCCTACAGCCTGAAGAAGTCTCATGGAGGTATTGGTCTTTGCCCCGGCCCGTGGGCCGCCGCCG
GACTCTGGGGGACTTGTATGCCATCAGCTGGCGTCAAGAGGAGAAGTACACAGTCATCTACCCG
TACACAGCTCGTGATCAGGATGAAATGAATCTAGAGAGAGGGGCCGTGGTGGAGGTCATCCAGA
AGAACCTGGAAGGCTGGTGGAAGATCAGGTACCAGGGCAAAGAGGGCTGGGCCCCAGCCTCCTA
CCTGAAGAAGAGTAGTGGGGAGCCCTTACCCCCGAAGCCGGGCACCGGCTCGCCTGCCCACACT
GGCATCCTCGACCTGGACGGACTTTCCCGGCAGCAGAGCTCAGTGGGTCGGGACAGGGAGCTGC
TCAACAACCAGAGGGATGGCCGGTTTGAAGGCCGTCCGGTGCCCGATGGCGACATCAAGCAGAG
ATCGCCCAAGATGAGGCAGAGACCACCTCCTCGCCGGGATATGACCATACCTCGAGGTCTCCAC
CTGCCCAAGCCTCCCGTTCCACCCCAAGTGGAGGAAGAGTATTACACCATTGCCGAATTCCAGA
CAACCATCCCTGATGGCATCAGCTTCCAGGCGGGTCTGAAGGTCGAGGTGATAGAAAAGAACTT
GAGTGGCTGGTGGTACATTCAGATCGAAGATAAGGAAGGATGGGCCCCAGCAACCTTCATTGAC
AAGTATAAGAAGACCAGCAATGCCTCAAGGCCCAACTTCCTGGCTCCCTTGCCCAACGAGGTGA
CCCAGCTCCATCTGGGGGATGCAGCAGCCATGGAGAACAACACAGGCAGCGAAGCCATCGGCCC
CTCCCGGCCCCTGCCAGATGCACCACATGGCGCCATGGACTCCGGGATGCCATGGTCCAAGGAC
TGGAAGGGAGGCAAGGAGGTCCCGAGGAAGGCGTCTTCTGACATGTCCTCATGTGCTGGCTACG
AAGAGATCTCAAGCCCTGACCTGGAGGAGAAACCCAGCCTCCCCCCCCGGAAAGAATCTATCAT
CAAGTCGGAAGGGGAGCTGCAGGAGAGGGAGCGGCAGAGGATGGAGCAGCTCAGAGGCTCCTCA
CCCAAACCTCCAGGCATGATTTTGCCAATGATTCCAGCCAAACACACACCTCCAGCCCGGGATG
GCAGGAGGTCAGAGCCCAAACCTGACAAAGGCAAGTTGCTCCAGCTGAAAAATGAGATGGGGCT
GGAGTGTGGCCACAAGGTATTGGCCAAAGAAGTGAAGAAGCCCAACCTCCGACCCATCTCCAAA
TCCAAAGCTGATCTGCCAGAGGAGAAGCCAGAAGGGATTCCTCAGAATCCCTTCTTGAAATCCA
AACCTCAGGTTAGGCCCAAACCAGCTCCTTCCCCCAGGACAGAACCACCTCAGGGCGAAGACCA
AGTGGACATCTGCAACCTCAGGAGTAAGCTGAGACCTGCCAAGTCCCAAGAGAAGCCCTTACTG
GATGGAGAGGGCAGCCAAGATGTGGCCTGCAGCCGGAGCTTCCTCCCGGGTGAAGGGCCTGGCC
GCACCCAGGACAGGACGGGCAAACAGGACGGGCTCAGCCCAAAGGAGGTGCCCTGCAGAGCCCC
TCCAAAGCCGGTCAAGACCGCAGATCCTGTGCCTAAGAATGTGCCCACCCCTCTCCAAGAGGCT
TCCCCGCAGCGACCCGTGGTCCTGCCCCGGAGACCACCACCCCCCAAAAAAACCTCATCTTCCA
GGCCCCTCCCGGAGGTCAGAGGGCCACAGCGGGAAGCAAGTGAAGGCAAAGCAGCTCCTGCTCC
AGGCCGGGCCCTACTGGTCCCTCCTAAAGCCAAACCTTTTCTTTCCAACTCCTCAGGCGGCCAC
GATGACATGCGAGGCAAAGGTGGTCTGGGACCGTGGCTGGTGGGCAAAATAGGAGAAAACAGGG
AGAAAGTAGCTGCCGCCCCCTTCCCCAGTGCTGACGGCTCGAAGGACTCTTTATACGTGGCAGT
GGCCAACTTTGAAGGAGACAAAGACACCAGCAGCTTCCAGGAGGGGACGGTGTTCGAGGTCCGG
GAAAAGAGCAGCAGTGGCTGGTGGTTCTGCCAAGTGCTGAGTGGGGCACCTTCCTGGGAAGGGT
GGATCCCTTCCAACTATCTCAAAAAGAAGCCGTAGCCTCCTTCCCTGCCTGGAGGTCCCGCGCA
TCCCTGCTGGCTTACCCACGTATTTAATATGCCTCTTAATTTATCATCCTTCATGCAGCTTCAA
AGGAAGGAAGAGTCTGGAATACTGTGGTTTCTTCCCTCCCTGGGGTAGAGAGTACCCCCTCCCA
TCACAGCATCCCCTGGCAGCCCAGAGGCCAACCTCCTGCTTCCTCTCCAAGTCAGCATCCCTGC
CTTAAGGCCAGTGGCACTGCCACCCTCTGTAGGCCGCCCTGCAGCGGGACCATGACTCTCCAAG
ACCAGAACCCATTGTCTGGAAACTGCAGAAATAGTCTCACTGCCGGCACCCCACCCAGCCTGAT
GGCTGGCTCCAGCCTCTCCACGTTTCTCAAAGTCCAGTGACTTGATTTCCTGAGTTTCCAAAAT
GCTTGTTGGTACCAGAAAGAACTCCATCCCCTGGAAGTTGGCTCTACCGCCAGTCGTAGGGAGA
TGTCCTCCTCGAGGCTCTGGGCCCATGAGCATCTCAACTGCCCCAAGAGTGGGCCAGAAGGTCC
ACTGAGCCATTCTGCCTCCCATCGTCTGTCTTGGGACCCTGACAGATCCTAAAGGGGTGCTTCA
TTTACCTGCGCAGGGCTTTTTAAATAGGAACCTCCACCCCACCTTGGGCCATTCCACTTTCGTC
TCCACAGAGCGAGAACCTCAAAGTTTGTTTGAAAGGAGCCACTCAAAAAAGAAAAAAAAAGAAA
GAAAGAAAGAAAG

hide sequence

Protein Sequences


Protein RefSeqs	XP_038329596	(Get FASTA)	NCBI Sequence Viewer
	XP_038329597	(Get FASTA)	NCBI Sequence Viewer
	XP_038329598	(Get FASTA)	NCBI Sequence Viewer
	XP_038350845	(Get FASTA)	NCBI Sequence Viewer
	XP_038350854	(Get FASTA)	NCBI Sequence Viewer
	XP_038390677	(Get FASTA)	NCBI Sequence Viewer
	XP_038390678	(Get FASTA)	NCBI Sequence Viewer
	XP_038390679	(Get FASTA)	NCBI Sequence Viewer
	XP_038454977	(Get FASTA)	NCBI Sequence Viewer
	XP_038454978	(Get FASTA)	NCBI Sequence Viewer
	XP_038454979	(Get FASTA)	NCBI Sequence Viewer
	XP_038519280	(Get FASTA)	NCBI Sequence Viewer
	XP_038519281	(Get FASTA)	NCBI Sequence Viewer
	XP_038519282	(Get FASTA)	NCBI Sequence Viewer
	XP_546237	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000024743.5
	ENSCAFP00000061217.2
	ENSCAFP00000061747.2
	ENSCAFP00030002419.1
	ENSCAFP00030002448.1
	ENSCAFP00030002479.1
	ENSCAFP00030002513.1
	ENSCAFP00040000606.1
	ENSCAFP00040000638.1
	ENSCAFP00040000673.1
	ENSCAFP00040000778.1
	ENSCAFP00845001469
	ENSCAFP00845001469.1
	ENSCAFP00845001474
	ENSCAFP00845001474.1
	ENSCAFP00845001491
	ENSCAFP00845001491.1
	ENSCAFP00845001509.1

RefSeq Acc Id:	XP_546237 ⟸ XM_546237
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0PQ93 (UniProtKB/TrEMBL), A0A8I3MDP6 (UniProtKB/TrEMBL), A0A8C0KFP3 (UniProtKB/TrEMBL)
- Sequence:	show sequence RRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSGSTEAIYRRYSKFFDLQMQMLDKFPMEGGQKD PKQRIIPFLPGKILFRRSHIRDVAVKRLIPIDEYCKALIQLPPYISQCDEVLQFFETRPEDLNP PKEEHVGKKKSGGDLTSVDPMVLEQYVVVADYQKQESSEISLSVGQVVDIIEKNESGWWFVSTA EEQGWVPATCLEGQDGMQDEFSLQPEEVSWRYWSLPRPVGRRRTLGDLYAISWRQEEKYTVIYP YTARDQDEMNLERGAVVEVIQKNLEGWWKIRYQGKEGWAPASYLKKSSGEPLPPKPGTGSPAHT GILDLDGLSRQQSSVGRDRELLNNQRDGRFEGRPVPDGDIKQRSPKMRQRPPPRRDMTIPRGLH LPKPPVPPQVEEEYYTIAEFQTTIPDGISFQAGLKVEVIEKNLSGWWYIQIEDKEGWAPATFID KYKKTSNASRPNFLAPLPNEVTQLHLGDAAAMENNTGSEAIGPSRPLPDAPHGAMDSGMPWSKD WKGGKEVPRKASSDMSSCAGYEEISSPDLEEKPSLPPRKESIIKSEGELQERERQRMEQLRGSS PKPPGMILPMIPAKHTPPARDGRRSEPKPDKGKLLQLKNEMGLECGHKVLAKEVKKPNLRPISK SKADLPEEKPEGIPQNPFLKSKPQVRPKPAPSPRTEPPQGEDQVDICNLRSKLRPAKSQEKPLL DGEGSQDVACSRSFLPGEGPGRTQDRTGKQDGLSPKEVPCRAPPKPVKTADPVPKNVPTPLQEA SPQRPVVLPRRPPPPKKTSSSRPLPEVRGPQREASEGKAAPAPGRALLVPPKAKPFLSNSSGGH DDMRGKGGLGPWLVGKIGENREKVAAAPFPSADGSKDSLYVAVANFEGDKDTSSFQEGTVFEVR EKSSSGWWFCQVLSGAPSWEGWIPSNYLKKKP hide sequence

Ensembl Acc Id:

ENSCAFP00000061217 ⟸ ENSCAFT00000064091

Ensembl Acc Id:

ENSCAFP00000054676 ⟸ ENSCAFT00000059723

Ensembl Acc Id:

ENSCAFP00000061747 ⟸ ENSCAFT00000091284

Ensembl Acc Id:

ENSCAFP00000024743 ⟸ ENSCAFT00000026637

Ensembl Acc Id:

ENSCAFP00000063235 ⟸ ENSCAFT00000071925

RefSeq Acc Id:	XP_038329596 ⟸ XM_038473668
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038329598 ⟸ XM_038473670
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038329597 ⟸ XM_038473669
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038454977 ⟸ XM_038599049
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038454979 ⟸ XM_038599051
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038454978 ⟸ XM_038599050
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038519280 ⟸ XM_038663352
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0PQ93 (UniProtKB/TrEMBL), A0A8I3MDP6 (UniProtKB/TrEMBL), A0A8C0KFP3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038519282 ⟸ XM_038663354
- Peptide Label:	isoform X3
- UniProtKB:	A0A8P0SKU6 (UniProtKB/TrEMBL), A0A8C0KFP3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038519281 ⟸ XM_038663353
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I3MGH0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038350854 ⟸ XM_038494926
- Peptide Label:	isoform X3
- UniProtKB:	A0A8P0SKU6 (UniProtKB/TrEMBL), A0A8C0KFP3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038350845 ⟸ XM_038494917
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I3MGH0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038390677 ⟸ XM_038534749
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0KFP3 (UniProtKB/TrEMBL), A0A8C0PQ93 (UniProtKB/TrEMBL), A0A8I3MDP6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038390679 ⟸ XM_038534751
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0KFP3 (UniProtKB/TrEMBL), A0A8P0SKU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038390678 ⟸ XM_038534750
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I3MGH0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845001509 ⟸ ENSCAFT00845001920

Ensembl Acc Id:

ENSCAFP00845001474 ⟸ ENSCAFT00845001874

Ensembl Acc Id:

ENSCAFP00845001469 ⟸ ENSCAFT00845001865

Ensembl Acc Id:

ENSCAFP00845001491 ⟸ ENSCAFT00845001896

Protein Domains

PX SH3

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000016825	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030001524	UniProtKB/TrEMBL
	ENSCAFG00040000411	UniProtKB/TrEMBL
	ENSCAFG00845001080	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000026637.5	UniProtKB/TrEMBL
	ENSCAFT00000064091.2	UniProtKB/TrEMBL
	ENSCAFT00000091284.2	UniProtKB/TrEMBL
	ENSCAFT00030002712.1	UniProtKB/TrEMBL
	ENSCAFT00030002746.1	UniProtKB/TrEMBL
	ENSCAFT00030002783.1	UniProtKB/TrEMBL
	ENSCAFT00030002827.1	UniProtKB/TrEMBL
	ENSCAFT00040000723.1	UniProtKB/TrEMBL
	ENSCAFT00040000759.1	UniProtKB/TrEMBL
	ENSCAFT00040000796.1	UniProtKB/TrEMBL
	ENSCAFT00040000919.1	UniProtKB/TrEMBL
	ENSCAFT00845001865	ENTREZGENE
	ENSCAFT00845001865.1	UniProtKB/TrEMBL
	ENSCAFT00845001874	ENTREZGENE
	ENSCAFT00845001874.1	UniProtKB/TrEMBL
	ENSCAFT00845001896	ENTREZGENE
	ENSCAFT00845001896.1	UniProtKB/TrEMBL
	ENSCAFT00845001920.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1520.10	UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/TrEMBL
InterPro	NADPH_Oxidase/PX-Domain	UniProtKB/TrEMBL
	PX_dom	UniProtKB/TrEMBL
	PX_dom_sf	UniProtKB/TrEMBL
	SH3-like_dom_sf	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
	SH3PXD2_PX	UniProtKB/TrEMBL
	SH3PXD2B_SH3_1	UniProtKB/TrEMBL
	SH3PXD2B_SH3_2	UniProtKB/TrEMBL
	SH3PXD2B_SH3_3	UniProtKB/TrEMBL
	SH3PXD2B_SH3_4	UniProtKB/TrEMBL
NCBI Gene	SH3PXD2B	ENTREZGENE
PANTHER	SH3 AND PX DOMAIN-CONTAINING PROTEIN 2B	UniProtKB/TrEMBL
	SH3 MULTIPLE DOMAIN	UniProtKB/TrEMBL
Pfam	PF00787	UniProtKB/TrEMBL
	SH3_1	UniProtKB/TrEMBL
	SH3_2	UniProtKB/TrEMBL
PROSITE	PS50195	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
SMART	SH3	UniProtKB/TrEMBL
	SM00312	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50044	UniProtKB/TrEMBL
	SSF64268	UniProtKB/TrEMBL
UniProt	A0A8C0KFP3	ENTREZGENE
	A0A8C0LVW7_CANLF	UniProtKB/TrEMBL
	A0A8C0LZ60_CANLF	UniProtKB/TrEMBL
	A0A8C0M2L7_CANLF	UniProtKB/TrEMBL
	A0A8C0PKX7_CANLF	UniProtKB/TrEMBL
	A0A8C0PQ93	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0PUL9_CANLF	UniProtKB/TrEMBL
	A0A8C0Q276_CANLF	UniProtKB/TrEMBL
	A0A8I3MDP6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MGH0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MHP6_CANLF	UniProtKB/TrEMBL
	A0A8I3RPN3_CANLF	UniProtKB/TrEMBL
	A0A8P0SKU6	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:46131	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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