BATF3 (basic leucine zipper ATF-like transcription factor 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: BATF3 (basic leucine zipper ATF-like transcription factor 3) Canis lupus familiaris
Analyze
Symbol: BATF3
Name: basic leucine zipper ATF-like transcription factor 3
RGD ID: 12232905
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity (inferred); DNA-binding transcription repressor activity, RNA polymerase II-specific (inferred); INVOLVED IN myeloid dendritic cell differentiation (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); leprosy (ortholog); parathyroid carcinoma (ortholog); FOUND IN cytosol (inferred); nucleolus (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: basic leucine zipper transcriptional factor ATF-like 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1710,843,859 - 10,854,269 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl710,843,850 - 10,857,847 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha710,418,597 - 10,431,359 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0710,549,439 - 10,562,211 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl710,549,430 - 10,563,388 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1710,472,213 - 10,484,950 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0710,573,492 - 10,586,259 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0710,697,314 - 10,710,068 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
BATF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1710,843,859 - 10,854,269 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl710,843,850 - 10,857,847 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha710,418,597 - 10,431,359 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0710,549,439 - 10,562,211 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl710,549,430 - 10,563,388 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1710,472,213 - 10,484,950 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0710,573,492 - 10,586,259 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0710,697,314 - 10,710,068 (-)NCBIUU_Cfam_GSD_1.0
BATF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381212,686,417 - 212,699,840 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1212,686,417 - 212,699,840 (-)EnsemblGRCh38hg38GRCh38
GRCh371212,859,759 - 212,873,182 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361210,926,383 - 210,939,950 (-)NCBINCBI36Build 36hg18NCBI36
Celera1186,085,819 - 186,099,376 (-)NCBICelera
Cytogenetic Map1q32.3NCBI
HuRef1183,536,476 - 183,550,021 (-)NCBIHuRef
CHM1_11214,132,649 - 214,146,219 (-)NCBICHM1_1
T2T-CHM13v2.01211,931,370 - 211,944,803 (-)NCBIT2T-CHM13v2.0
Batf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391190,830,611 - 190,841,140 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1190,830,044 - 190,841,142 (+)EnsemblGRCm39 Ensembl
GRCm381191,098,414 - 191,108,943 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1191,097,847 - 191,108,945 (+)EnsemblGRCm38mm10GRCm38
MGSCv371192,922,293 - 192,932,822 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361192,799,029 - 192,809,558 (+)NCBIMGSCv36mm8
Celera1198,025,782 - 198,036,491 (+)NCBICelera
Cytogenetic Map1H6NCBI
cM Map196.28NCBI
Batf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813105,220,782 - 105,232,365 (+)NCBIGRCr8
mRatBN7.213102,689,657 - 102,701,241 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13102,689,657 - 102,701,139 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13105,209,731 - 105,221,314 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013106,593,687 - 106,605,270 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013103,808,675 - 103,820,258 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013109,713,376 - 109,726,438 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13109,713,489 - 109,724,863 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013114,308,705 - 114,320,081 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413107,128,770 - 107,140,194 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113107,317,873 - 107,329,297 (+)NCBI
Celera13102,155,014 - 102,166,267 (+)NCBICelera
Cytogenetic Map13q27NCBI
Batf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049558152,846 - 11,035 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049558152,852 - 11,035 (+)NCBIChiLan1.0ChiLan1.0
BATF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2136,699,816 - 36,714,928 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1136,664,211 - 36,679,405 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01188,256,087 - 188,271,196 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11193,116,320 - 193,131,306 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1193,116,694 - 193,131,228 (-)Ensemblpanpan1.1panPan2
Batf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934463,596,737 - 63,610,039 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936557837,001 - 850,320 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936557837,023 - 850,316 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BATF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9130,699,196 - 130,712,358 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19130,699,092 - 130,711,719 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29143,780,730 - 143,806,814 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BATF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12516,832,733 - 16,848,835 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2516,834,957 - 16,848,510 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605517,331,273 - 17,345,957 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Batf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477118,102,722 - 18,112,640 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BATF3
91 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000047653   ⟹   ENSCAFP00000036121
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl710,843,850 - 10,857,847 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845006755   ⟹   ENSCAFP00845005371
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl710,549,430 - 10,563,388 (-)Ensembl
RefSeq Acc Id: XM_038480767   ⟹   XP_038336695
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1710,472,213 - 10,484,950 (-)NCBI
RefSeq Acc Id: XM_038542088   ⟹   XP_038398016
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0710,697,314 - 10,710,068 (-)NCBI
RefSeq Acc Id: XM_038562655   ⟹   XP_038418583
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha710,418,597 - 10,431,359 (-)NCBI
RefSeq Acc Id: XM_038606245   ⟹   XP_038462173
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0710,573,492 - 10,586,259 (-)NCBI
RefSeq Acc Id: XM_038670939   ⟹   XP_038526867
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0710,549,439 - 10,562,211 (-)NCBI
Ensembl Acc Id: ENSCAFP00000036121   ⟸   ENSCAFT00000047653
RefSeq Acc Id: XP_038336695   ⟸   XM_038480767
RefSeq Acc Id: XP_038462173   ⟸   XM_038606245
RefSeq Acc Id: XP_038526867   ⟸   XM_038670939
- UniProtKB: A0A8C0KP74 (UniProtKB/TrEMBL),   A0A8C0MMB9 (UniProtKB/TrEMBL),   A0A8I3RRM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038418583   ⟸   XM_038562655
- UniProtKB: A0A8C0KP74 (UniProtKB/TrEMBL),   A0A8C0MMB9 (UniProtKB/TrEMBL),   A0A8I3RRM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038398016   ⟸   XM_038542088
- UniProtKB: A0A8C0KP74 (UniProtKB/TrEMBL),   A0A8C0MMB9 (UniProtKB/TrEMBL),   A0A8I3RRM3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845005371   ⟸   ENSCAFT00845006755
Protein Domains
bZIP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000032161 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030006503 UniProtKB/TrEMBL
  ENSCAFG00845003785 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000047653.3 UniProtKB/TrEMBL
  ENSCAFT00030011986.1 UniProtKB/TrEMBL
  ENSCAFT00845006755 ENTREZGENE
  ENSCAFT00845006755.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
InterPro AP-1 UniProtKB/TrEMBL
  bZIP UniProtKB/TrEMBL
  bZIP_sf UniProtKB/TrEMBL
NCBI Gene BATF3 ENTREZGENE
PANTHER PTHR23351 UniProtKB/TrEMBL
  PTHR23351:SF13 UniProtKB/TrEMBL
Pfam bZIP_1 UniProtKB/TrEMBL
PRINTS LEUZIPPRFOS UniProtKB/TrEMBL
PROSITE BZIP UniProtKB/TrEMBL
  BZIP_BASIC UniProtKB/TrEMBL
SMART BRLZ UniProtKB/TrEMBL
Superfamily-SCOP SSF57959 UniProtKB/TrEMBL
UniProt A0A8C0KP74 ENTREZGENE
  A0A8C0MMB9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RRM3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38387 ENTREZGENE