BATF3 (basic leucine zipper ATF-like transcription factor 3) - Rat Genome Database

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Gene: BATF3 (basic leucine zipper ATF-like transcription factor 3) Sus scrofa
Analyze
Symbol: BATF3
Name: basic leucine zipper ATF-like transcription factor 3
RGD ID: 14269036
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN myeloid dendritic cell differentiation (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); leprosy (ortholog); FOUND IN RNA polymerase II transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: basic leucine zipper transcriptional factor ATF-like 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9130,699,196 - 130,712,358 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19130,699,092 - 130,711,719 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29143,780,730 - 143,806,814 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
BATF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9130,699,196 - 130,712,358 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19130,699,092 - 130,711,719 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29143,780,730 - 143,806,814 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BATF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381212,686,417 - 212,699,840 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1212,686,417 - 212,699,840 (-)EnsemblGRCh38hg38GRCh38
GRCh371212,859,759 - 212,873,182 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361210,926,383 - 210,939,950 (-)NCBINCBI36Build 36hg18NCBI36
Celera1186,085,819 - 186,099,376 (-)NCBICelera
Cytogenetic Map1q32.3NCBI
HuRef1183,536,476 - 183,550,021 (-)NCBIHuRef
CHM1_11214,132,649 - 214,146,219 (-)NCBICHM1_1
T2T-CHM13v2.01211,931,370 - 211,944,803 (-)NCBIT2T-CHM13v2.0
Batf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391190,830,611 - 190,841,140 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1190,830,044 - 190,841,142 (+)EnsemblGRCm39 Ensembl
GRCm381191,098,414 - 191,108,943 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1191,097,847 - 191,108,945 (+)EnsemblGRCm38mm10GRCm38
MGSCv371192,922,293 - 192,932,822 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361192,799,029 - 192,809,558 (+)NCBIMGSCv36mm8
Celera1198,025,782 - 198,036,491 (+)NCBICelera
Cytogenetic Map1H6NCBI
cM Map196.28NCBI
Batf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813105,220,782 - 105,232,365 (+)NCBIGRCr8
mRatBN7.213102,689,657 - 102,701,241 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13102,689,657 - 102,701,139 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13105,209,731 - 105,221,314 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013106,593,687 - 106,605,270 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013103,808,675 - 103,820,258 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013109,713,376 - 109,726,438 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13109,713,489 - 109,724,863 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013114,308,705 - 114,320,081 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413107,128,770 - 107,140,194 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113107,317,873 - 107,329,297 (+)NCBI
Celera13102,155,014 - 102,166,267 (+)NCBICelera
Cytogenetic Map13q27NCBI
Batf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049558152,846 - 11,035 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049558152,852 - 11,035 (+)NCBIChiLan1.0ChiLan1.0
BATF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2136,699,816 - 36,714,928 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1136,664,211 - 36,679,405 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01188,256,087 - 188,271,196 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11193,116,320 - 193,131,306 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1193,116,694 - 193,131,228 (-)Ensemblpanpan1.1panPan2
BATF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1710,843,859 - 10,854,269 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl710,843,850 - 10,857,847 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha710,418,597 - 10,431,359 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0710,549,439 - 10,562,211 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl710,549,430 - 10,563,388 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1710,472,213 - 10,484,950 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0710,573,492 - 10,586,259 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0710,697,314 - 10,710,068 (-)NCBIUU_Cfam_GSD_1.0
Batf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934463,596,737 - 63,610,039 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936557837,001 - 850,320 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936557837,023 - 850,316 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BATF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12516,832,733 - 16,848,835 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2516,834,957 - 16,848,510 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605517,331,273 - 17,345,957 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Batf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477118,102,722 - 18,112,640 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in BATF3
204 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 2 5 16 1 3
Below cutoff 1 2 1 4 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000023780   ⟹   ENSSSCP00000019677
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9130,699,196 - 130,712,358 (+)Ensembl
RefSeq Acc Id: XM_021063852   ⟹   XP_020919511
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19130,699,092 - 130,711,719 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020919511   ⟸   XM_021063852
- UniProtKB: A0A4X1TK23 (UniProtKB/TrEMBL),   I3L6M6 (UniProtKB/TrEMBL),   A0A8D0NNF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000019677   ⟸   ENSSSCT00000023780
Protein Domains
bZIP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000026587 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015040455 UniProtKB/TrEMBL
  ENSSSCG00015040817 UniProtKB/TrEMBL
  ENSSSCG00025063828 UniProtKB/TrEMBL
  ENSSSCG00030052614 UniProtKB/TrEMBL
  ENSSSCG00035050952 UniProtKB/TrEMBL
  ENSSSCG00035051531 UniProtKB/TrEMBL
  ENSSSCG00040016506 UniProtKB/TrEMBL
  ENSSSCG00045026108 UniProtKB/TrEMBL
  ENSSSCG00050010718 UniProtKB/TrEMBL
  ENSSSCG00055006449 UniProtKB/TrEMBL
  ENSSSCG00065026334 UniProtKB/TrEMBL
  ENSSSCG00070010159 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023780 ENTREZGENE
  ENSSSCT00000023780.4 UniProtKB/TrEMBL
  ENSSSCT00015053912.1 UniProtKB/TrEMBL
  ENSSSCT00015054367.1 UniProtKB/TrEMBL
  ENSSSCT00025087438.1 UniProtKB/TrEMBL
  ENSSSCT00030073353.1 UniProtKB/TrEMBL
  ENSSSCT00035067870.1 UniProtKB/TrEMBL
  ENSSSCT00035068630.1 UniProtKB/TrEMBL
  ENSSSCT00040022194.1 UniProtKB/TrEMBL
  ENSSSCT00045044543.1 UniProtKB/TrEMBL
  ENSSSCT00050014404.1 UniProtKB/TrEMBL
  ENSSSCT00055012448.1 UniProtKB/TrEMBL
  ENSSSCT00065035380.1 UniProtKB/TrEMBL
  ENSSSCT00065035388.1 UniProtKB/TrEMBL
  ENSSSCT00070019741.1 UniProtKB/TrEMBL
  ENSSSCT00070019752.1 UniProtKB/TrEMBL
  ENSSSCT00070019761.1 UniProtKB/TrEMBL
  ENSSSCT00070019766.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
InterPro AP-1 UniProtKB/TrEMBL
  bZIP UniProtKB/TrEMBL
  bZIP_sf UniProtKB/TrEMBL
  Mis14/Nsl1 UniProtKB/TrEMBL
NCBI Gene BATF3 ENTREZGENE
PANTHER KINETOCHORE-ASSOCIATED PROTEIN NSL1 HOMOLOG UniProtKB/TrEMBL
  PTHR23351 UniProtKB/TrEMBL
  PTHR23351:SF13 UniProtKB/TrEMBL
  PTHR31749 UniProtKB/TrEMBL
Pfam bZIP_1 UniProtKB/TrEMBL
  Mis14 UniProtKB/TrEMBL
PRINTS LEUZIPPRFOS UniProtKB/TrEMBL
PROSITE BZIP UniProtKB/TrEMBL
  BZIP_BASIC UniProtKB/TrEMBL
SMART BRLZ UniProtKB/TrEMBL
Superfamily-SCOP SSF57959 UniProtKB/TrEMBL
UniProt A0A4X1TK23 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TMS5_PIG UniProtKB/TrEMBL
  A0A8D0IQ62_PIG UniProtKB/TrEMBL
  A0A8D0NNF3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Y966_PIG UniProtKB/TrEMBL
  I3L6M6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85760 ENTREZGENE