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Gene: SLAIN1 (SLAIN motif family member 1) Canis lupus familiaris

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Symbol:

SLAIN1

Name:

SLAIN motif family member 1

RGD ID:

12222208

Description:

ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); neuronal ceroid lipofuscinosis (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SLAIN motif-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	31,199,494 - 31,258,920 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	31,199,533 - 31,258,021 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	31,059,969 - 31,119,380 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	31,518,440 - 31,577,868 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	31,518,472 - 31,577,762 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	31,178,235 - 31,237,893 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	31,216,534 - 31,275,927 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	31,290,054 - 31,349,399 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 13q14 deletion syndrome (ISO)

neuronal ceroid lipofuscinosis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SLAIN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	31,199,494 - 31,258,920 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	31,199,533 - 31,258,021 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	31,059,969 - 31,119,380 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	31,518,440 - 31,577,868 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	31,518,472 - 31,577,762 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	31,178,235 - 31,237,893 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	31,216,534 - 31,275,927 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	31,290,054 - 31,349,399 (+)	NCBI		UU_Cfam_GSD_1.0

SLAIN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	77,697,687 - 77,764,229 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	77,697,687 - 77,764,242 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	78,271,822 - 78,338,364 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	77,170,471 - 77,236,378 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	13	59,170,471 - 59,236,367 (+)	NCBI		Celera
Cytogenetic Map	13	q22.3	NCBI
HuRef	13	58,969,702 - 59,037,136 (+)	NCBI		HuRef
CHM1_1	13	78,239,942 - 78,305,763 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	76,922,360 - 76,989,219 (+)	NCBI		T2T-CHM13v2.0

Slain1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	103,887,664 - 103,942,343 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	103,887,664 - 103,942,343 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	103,650,228 - 103,704,907 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	103,650,228 - 103,704,907 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	104,049,460 - 104,104,019 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	102,535,922 - 102,590,481 (+)	NCBI		MGSCv36	mm8
Celera	14	102,277,925 - 102,332,181 (+)	NCBI		Celera
Cytogenetic Map	14	E2.3	NCBI
cM Map	14	52.75	NCBI

Slain1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	86,897,476 - 86,957,113 (+)	NCBI		GRCr8
mRatBN7.2	15	80,482,818 - 80,542,461 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	80,482,367 - 80,542,350 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	84,462,499 - 84,522,163 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	85,585,541 - 85,645,202 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	82,513,170 - 82,572,840 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	87,862,832 - 87,906,472 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	87,886,783 - 87,906,474 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	91,357,889 - 91,401,695 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	87,720,662 - 87,770,016 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	87,736,441 - 87,785,803 (+)	NCBI
Celera	15	79,632,758 - 79,675,830 (+)	NCBI		Celera
Cytogenetic Map	15	q21	NCBI

Slain1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955404	29,535,923 - 29,595,141 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955404	29,537,497 - 29,594,617 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLAIN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	79,266,077 - 79,332,927 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	77,862,202 - 77,929,068 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	58,914,327 - 58,981,193 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	77,956,027 - 78,021,872 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

Slain1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	128,198,023 - 128,254,849 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936511	3,614,303 - 3,671,847 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936511	3,615,251 - 3,671,429 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLAIN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	49,807,994 - 49,886,822 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	49,807,976 - 49,886,829 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	54,498,235 - 54,504,073 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLAIN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	56,774,381 - 56,840,862 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	56,774,157 - 56,839,851 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666046	12,994,744 - 13,061,499 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slain1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624751	22,608,843 - 22,674,805 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624751	22,609,259 - 22,674,805 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SLAIN1
715 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005634003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038431251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038506635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038569833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038633987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_848263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000008351 ⟹ ENSCAFP00000007740

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	22	31,199,533 - 31,258,021 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000061414 ⟹ ENSCAFP00000049319

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	22	31,228,756 - 31,258,021 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000065101 ⟹ ENSCAFP00000064411

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	22	31,243,057 - 31,258,021 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000089414 ⟹ ENSCAFP00000060751

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	22	31,199,533 - 31,258,021 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845048732 ⟹ ENSCAFP00845038235

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	22	31,518,472 - 31,577,762 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845048783 ⟹ ENSCAFP00845038277

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	22	31,518,472 - 31,577,762 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845048843 ⟹ ENSCAFP00845038320

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	22	31,519,280 - 31,577,762 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845048894 ⟹ ENSCAFP00845038354

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	22	31,562,003 - 31,577,762 (+)	Ensembl

RefSeq Acc Id:

XM_038431251 ⟹ XP_038287179

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	22	31,518,440 - 31,577,868 (+)	NCBI

RefSeq Acc Id:

XM_038506635 ⟹ XP_038362563

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	22	31,178,235 - 31,237,893 (+)	NCBI

RefSeq Acc Id:

XM_038569833 ⟹ XP_038425761

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	22	31,290,054 - 31,349,399 (+)	NCBI

RefSeq Acc Id:

XM_038633987 ⟹ XP_038489915

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	22	31,216,534 - 31,275,927 (+)	NCBI

RefSeq Acc Id:

XM_848263 ⟹ XP_853356

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	22	31,199,494 - 31,258,920 (+)	NCBI
Dog10K_Boxer_Tasha	22	31,059,969 - 31,119,380 (+)	NCBI

Sequence:

show sequence

CCCCCACCGCCCGCGGCCGCGGCGCCCCCGGGGCCCACGATGATGGCGGAGCAGGTGAAATGCG
CCTCGACAGGGGGCGGCTCCGGAGCGGGCTCCGGGCCGGTGGTGAACGCAGAGCTGGAGGTGAA
GAAGCTGCAGGAGCTGGTGCGCAAGCTGGAGAAGCAGAACGAGCAGCTGCGGAGCCGGGCGGCG
AGCGCGGCCGCCGCCCCGCACCTGCTGCTGCTGCCGCCGCCGCCGCCGCCCGCCGCGCCGCCCC
CCGCCGGGGCCTGCAGCCCGTTGGGTCCCCGGAGCCCCCCGGCCGCCGCCGCCGCCGCCTCGGG
GGGCCTGGGGCTCGGGCTGGCGCTGGGCGCCGGGGGCGGCTGCGGCTGCAGCGGCGGCTCCAGC
CCCGAGTTCCCGGGCACCTTCTGCCTGCCCAGCCCGGCACCCTCCCTGCTCTGCAGCCTGGCAC
AGCCCCCCGAGGCGCCCTTCGTCTACTTCAAGCCGGCGGCGGGCTTCTTCGGCGCGGGCGGCGG
CGGGCCGGAGCCGGGGGGCGCGGGGACGCCGCCGGGGGGAGCCCCCGCGCCGCCCTCGCCGCCC
CCGACGCTGCTGGACGAGGTGGAGCCGCTGGACCTGGAGAGCGTGGCCGCCTGGCGGGACGAGG
ACGACTGCACCTGGTTATACGTTGGCTCTTCAAAGACATTCACATCATCAGAGAAATCCCTGAG
CCCTTTGCAGTGGTGTAGACACGTCCTAGATAACCCGACTCCAGAGATGGAAGCAGCAAGGCGT
TCCCTGTGCTTTAGACTGGAGCAAGGTTACACCTCCAGGGGCTCCCCACTCAGCCCCCAGTCCT
CTATAGACAGTGAGCTGAGTACTTCAGAATTGGAAGATGATTCTATCTCCATGGGATATAAGTT
ACAGGATCTCACTGATGTTCAGATCATGGCTCGTCTCCAAGAAGAAAGTCTCAGGCAAGATTAC
GCTTCCACTTCAGCATCTGTGTCCAGAAATAGTTCCAGTGTTTCATTGAGTTCAGGAAAAAAGG
GGACATGTAGTGATCAAGAATATGATCGATTCAGTCTGGAGGACGAGGAAGAATTTGATCATTT
GCCACCACCTCAGCCCCGTCTTCCAAGATGTTCACCTTTCCAAAGAGGAATTCCCCATTCACAG
ACTTTCTCCAGCATTCGGGAATGTAGGAGGAGCCCCAGTACCCAATACTTTCCCTCAAATAATT
ACCAGCAGCAACAGTATTACTCACCTCAAGCCCAAACTCCAGATCAGCAACCAAATAGGACCAA
TGGAGACAAGCTCCGAAGAAGTATGCCTAATCTAGCTCGGATGCCAAGTACAACTGCTGTCAGC
AGCAGTGCAAGTTCTCCAGTCACCGTGAGAAATAGTCAGAGTTTTGACTCGAGCTTGCATGGCG
CTGGAAATGGGATTTCAAGAATACAGTCTTGCATTCCATCCCCAGGACAGCTTCAACACAGAAT
CCACAGCGTGGGACATTTCCCTGTGTCTGTGCGACAGCCTCTTAAAGCCACGGCCTATGTGAGT
CCCACTGTTCAAGGTGGCAGCAGCATGCCCGTATCCAATGGCCTCCAATTGTACGCCAGCACGG
GGATCCCCACCCCAAACAAGGCTGCGGCATCTGGGGTGATGGGCCGCAGCGCTCTTCCAAGACC
TTCACTGGCAATAAATGGGAGTAACCTTCCTCGAAGCAAAATTGCACAGCCTGTTCGGAGTTTC
CTTCAGCCTCCAAAGCCTCTGTCTTCGCTCAGCACCCTGAGGGATGGAAGCTGGAGAGACGGTT
GCTACTGATGCGGTTGCACGCGCCCTTGGAGCCCAGGAAAGGAGTGGAAATGAGGGTCGAGTTA
CCTAGCTGGCTAGGTAACCGTGAACGTCGGGATATTCTTTCCCTTCTGCATTTTAACATATTTA
CTGCATTGTTTTTCAACGGACCGAGCGCCAGAGACTAATGATTGCACTTAATTATTTGCCTGAG
AGAATACCGCCCCAATCTCACATCCATGGCTGCGGTATCGTGACACTTAGATCTAGGAGGTTTT
TTGTAGAACTGCTATGTCCCTGAACACTTTTTGAGAGAATTGAGATGTATCAATAATGCTTTCT
TTGCCATGATTTTTTTTTTTTACAGTAACTTGTTCCATATACTTACGTGTTCTAGACATCCTTT
CCTTATGTGTTCTGTTTTTTAATACATGGCATATTTACAACTAGGTTCTATAATTTATGCTTTG
AAATTTACTTTTTTATAGTTTACAGGAATTTTATTTTTTGTGCCTATTTCTTTTTACACCTACG
TGAACCACTATGGAGCAACTTAAATTTTGTGCCATAAAAATATTTTTGTGGTAAGGTACTATTT
TTTTAGCTCTAGGGATAGATCAGTGAAAATCCACCATACACTTTGAAAGACCTAATTTTATGTT
GAACGAGCACAATATAAGCTGAAGCATTGCAAGGAGACAGCCAGACAGCAGTTAGATCGTCATG
TCTTTTTCATTGTTAATTTATTGTCCTACATGGGTTTCAGATTTATAAAGGCATCACAGGCTCA
TTGCACTTAATACCTGCAATGTTTGCTCCTGTACCATGATTGATTTTCAATACTTTATTACAGA
GGATGAGAAACTGTAATGTTTTATTAACAATGCTTCTGGAAATGGATGCATTTTAAAGCAAATA
AATCTTTTTGATAGACCTTTTACAAAACCCATTTGCACTAATGAATGCTTTCTTATGGTATATG
ACTTAATATTTGTTACTGTGTACACTGCTCTTTTGGAATGTTCAGAAATAAAGACTATTTCAGC
AATA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038287179	(Get FASTA)	NCBI Sequence Viewer
	XP_038362563	(Get FASTA)	NCBI Sequence Viewer
	XP_038425761	(Get FASTA)	NCBI Sequence Viewer
	XP_038489915	(Get FASTA)	NCBI Sequence Viewer
	XP_853356	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000007740.5
	ENSCAFP00000049319.2
	ENSCAFP00000060751.2
	ENSCAFP00000064411.1
	ENSCAFP00030007675.1
	ENSCAFP00030007722.1
	ENSCAFP00040025351.1
	ENSCAFP00040025423.1
	ENSCAFP00845038235.1
	ENSCAFP00845038277
	ENSCAFP00845038277.1
	ENSCAFP00845038320.1
	ENSCAFP00845038354.1

RefSeq Acc Id:

XP_853356 ⟸ XM_848263

- UniProtKB:

A0A8I3PYL6 (UniProtKB/TrEMBL), A0A8P0SAN6 (UniProtKB/TrEMBL), A0A8C0SRM4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMAEQVKCASTGGGSGAGSGPVVNAELEVKKLQELVRKLEKQNEQLRSRAASAAAAPHLLLLPP
PPPPAAPPPAGACSPLGPRSPPAAAAAASGGLGLGLALGAGGGCGCSGGSSPEFPGTFCLPSPA
PSLLCSLAQPPEAPFVYFKPAAGFFGAGGGGPEPGGAGTPPGGAPAPPSPPPTLLDEVEPLDLE
SVAAWRDEDDCTWLYVGSSKTFTSSEKSLSPLQWCRHVLDNPTPEMEAARRSLCFRLEQGYTSR
GSPLSPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRNSSS
VSLSSGKKGTCSDQEYDRFSLEDEEEFDHLPPPQPRLPRCSPFQRGIPHSQTFSSIRECRRSPS
TQYFPSNNYQQQQYYSPQAQTPDQQPNRTNGDKLRRSMPNLARMPSTTAVSSSASSPVTVRNSQ
SFDSSLHGAGNGISRIQSCIPSPGQLQHRIHSVGHFPVSVRQPLKATAYVSPTVQGGSSMPVSN
GLQLYASTGIPTPNKAAASGVMGRSALPRPSLAINGSNLPRSKIAQPVRSFLQPPKPLSSLSTL
RDGSWRDGCY

hide sequence

Ensembl Acc Id:

ENSCAFP00000007740 ⟸ ENSCAFT00000008351

Ensembl Acc Id:

ENSCAFP00000064411 ⟸ ENSCAFT00000065101

Ensembl Acc Id:

ENSCAFP00000060751 ⟸ ENSCAFT00000089414

Ensembl Acc Id:

ENSCAFP00000049319 ⟸ ENSCAFT00000061414

RefSeq Acc Id:

XP_038362563 ⟸ XM_038506635

RefSeq Acc Id:

XP_038489915 ⟸ XM_038633987

RefSeq Acc Id:	XP_038287179 ⟸ XM_038431251
- UniProtKB:	A0A8I3PYL6 (UniProtKB/TrEMBL), A0A8P0SAN6 (UniProtKB/TrEMBL), A0A8C0SRM4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038425761 ⟸ XM_038569833
- UniProtKB:	A0A8C0SRM4 (UniProtKB/TrEMBL), A0A8I3PYL6 (UniProtKB/TrEMBL), A0A8P0SAN6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845038354 ⟸ ENSCAFT00845048894

Ensembl Acc Id:

ENSCAFP00845038277 ⟸ ENSCAFT00845048783

Ensembl Acc Id:

ENSCAFP00845038235 ⟸ ENSCAFT00845048732

Ensembl Acc Id:

ENSCAFP00845038320 ⟸ ENSCAFT00845048843

Promoters

RGD ID:

13687330

Promoter ID:

EPDNEW_C5397

Type:

single initiation site

Name:

SLAIN1_1

Description:

SLAIN motif family member 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	22	31,199,266 - 31,199,326	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000005183	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030004661	UniProtKB/TrEMBL
	ENSCAFG00040015732	UniProtKB/TrEMBL
	ENSCAFG00845027605	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000008351.6	UniProtKB/TrEMBL
	ENSCAFT00000061414.2	UniProtKB/TrEMBL
	ENSCAFT00000065101.2	UniProtKB/TrEMBL
	ENSCAFT00000089414.2	UniProtKB/TrEMBL
	ENSCAFT00030008728.1	UniProtKB/TrEMBL
	ENSCAFT00030008780.1	UniProtKB/TrEMBL
	ENSCAFT00040029171.1	UniProtKB/TrEMBL
	ENSCAFT00040029262.1	UniProtKB/TrEMBL
	ENSCAFT00845048732.1	UniProtKB/TrEMBL
	ENSCAFT00845048783	ENTREZGENE
	ENSCAFT00845048783.1	UniProtKB/TrEMBL
	ENSCAFT00845048843.1	UniProtKB/TrEMBL
	ENSCAFT00845048894.1	UniProtKB/TrEMBL
InterPro	Slain	UniProtKB/TrEMBL
NCBI Gene	SLAIN1	ENTREZGENE
PANTHER	PTHR22406	UniProtKB/TrEMBL
	SLAIN MOTIF-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
Pfam	SLAIN	UniProtKB/TrEMBL
UniProt	A0A8C0RCR9_CANLF	UniProtKB/TrEMBL
	A0A8C0RCU2_CANLF	UniProtKB/TrEMBL
	A0A8C0SRM4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PUM2_CANLF	UniProtKB/TrEMBL
	A0A8I3PYD5_CANLF	UniProtKB/TrEMBL
	A0A8I3PYL6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3QEG4_CANLF	UniProtKB/TrEMBL
	A0A8P0SAN6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0T285_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:46204	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar