SLAIN1 (SLAIN motif family member 1) - Rat Genome Database

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Gene: SLAIN1 (SLAIN motif family member 1) Sus scrofa
Analyze
Symbol: SLAIN1
Name: SLAIN motif family member 1
RGD ID: 13897334
Description: INVOLVED IN cytoplasmic microtubule organization (inferred); microtubule nucleation (inferred); positive regulation of microtubule polymerization (inferred); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); genetic disease (ortholog); neuronal ceroid lipofuscinosis (ortholog); FOUND IN microtubule plus-end (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SLAIN motif-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1149,807,994 - 49,886,822 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11149,807,976 - 49,886,829 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21154,498,235 - 54,504,073 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SLAIN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1149,807,994 - 49,886,822 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11149,807,976 - 49,886,829 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21154,498,235 - 54,504,073 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLAIN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381377,697,687 - 77,764,229 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1377,697,687 - 77,764,242 (+)EnsemblGRCh38hg38GRCh38
GRCh371378,271,822 - 78,338,364 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361377,170,471 - 77,236,378 (+)NCBINCBI36Build 36hg18NCBI36
Celera1359,170,471 - 59,236,367 (+)NCBICelera
Cytogenetic Map13q22.3NCBI
HuRef1358,969,702 - 59,037,136 (+)NCBIHuRef
CHM1_11378,239,942 - 78,305,763 (+)NCBICHM1_1
T2T-CHM13v2.01376,922,360 - 76,989,219 (+)NCBIT2T-CHM13v2.0
Slain1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914103,887,664 - 103,942,343 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14103,887,664 - 103,942,343 (+)EnsemblGRCm39 Ensembl
GRCm3814103,650,228 - 103,704,907 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14103,650,228 - 103,704,907 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714104,049,460 - 104,104,019 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614102,535,922 - 102,590,481 (+)NCBIMGSCv36mm8
Celera14102,277,925 - 102,332,181 (+)NCBICelera
Cytogenetic Map14E2.3NCBI
cM Map1452.75NCBI
Slain1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81586,897,476 - 86,957,113 (+)NCBIGRCr8
mRatBN7.21580,482,818 - 80,542,461 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1580,482,367 - 80,542,350 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1584,462,499 - 84,522,163 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01585,585,541 - 85,645,202 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01582,513,170 - 82,572,840 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01587,862,832 - 87,906,472 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1587,886,783 - 87,906,474 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01591,357,889 - 91,401,695 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41587,720,662 - 87,770,016 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11587,736,441 - 87,785,803 (+)NCBI
Celera1579,632,758 - 79,675,830 (+)NCBICelera
Cytogenetic Map15q21NCBI
Slain1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540429,535,923 - 29,595,141 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540429,537,497 - 29,594,617 (-)NCBIChiLan1.0ChiLan1.0
SLAIN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21479,266,077 - 79,332,927 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11377,862,202 - 77,929,068 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01358,914,327 - 58,981,193 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11377,956,027 - 78,021,872 (+)NCBIpanpan1.1PanPan1.1panPan2
SLAIN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12231,199,494 - 31,258,920 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2231,199,533 - 31,258,021 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2231,059,969 - 31,119,380 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02231,518,440 - 31,577,868 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2231,518,472 - 31,577,762 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12231,178,235 - 31,237,893 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02231,216,534 - 31,275,927 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02231,290,054 - 31,349,399 (+)NCBIUU_Cfam_GSD_1.0
Slain1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945128,198,023 - 128,254,849 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365113,614,303 - 3,671,847 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365113,615,251 - 3,671,429 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLAIN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1356,774,381 - 56,840,862 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl356,774,157 - 56,839,851 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604612,994,744 - 13,061,499 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slain1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475122,608,843 - 22,674,805 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475122,609,259 - 22,674,805 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLAIN1
2846 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 21
Low 10 2 2 5 2 2 3 2
Below cutoff 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000010388   ⟹   ENSSSCP00000010118
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1149,830,835 - 49,886,820 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000010389   ⟹   ENSSSCP00000010119
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1149,866,495 - 49,886,822 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000039426   ⟹   ENSSSCP00000049324
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1149,807,994 - 49,886,820 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000048321   ⟹   ENSSSCP00000038776
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1149,807,994 - 49,886,711 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000087498   ⟹   ENSSSCP00000066726
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1149,807,995 - 49,886,722 (+)Ensembl
RefSeq Acc Id: XM_021065765   ⟹   XP_020921424
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11149,807,976 - 49,886,829 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021065766   ⟹   XP_020921425
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11149,807,976 - 49,886,829 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020921424   ⟸   XM_021065765
- Peptide Label: isoform X1
- UniProtKB: A0A4X1V1L6 (UniProtKB/TrEMBL),   A0A287A4A7 (UniProtKB/TrEMBL),   A0A8D0Y520 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020921425   ⟸   XM_021065766
- Peptide Label: isoform X2
- UniProtKB: A0A4X1V1I9 (UniProtKB/TrEMBL),   A0A8D1GVC3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000049324   ⟸   ENSSSCT00000039426
RefSeq Acc Id: ENSSSCP00000010118   ⟸   ENSSSCT00000010388
RefSeq Acc Id: ENSSSCP00000010119   ⟸   ENSSSCT00000010389
RefSeq Acc Id: ENSSSCP00000066726   ⟸   ENSSSCT00000087498
RefSeq Acc Id: ENSSSCP00000038776   ⟸   ENSSSCT00000048321


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000009475 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005027134 UniProtKB/TrEMBL
  ENSSSCG00015063100 UniProtKB/TrEMBL
  ENSSSCG00025000976 UniProtKB/TrEMBL
  ENSSSCG00030073285 UniProtKB/TrEMBL
  ENSSSCG00035042412 UniProtKB/TrEMBL
  ENSSSCG00040010122 UniProtKB/TrEMBL
  ENSSSCG00045007715 UniProtKB/TrEMBL
  ENSSSCG00050068021 UniProtKB/TrEMBL
  ENSSSCG00055017061 UniProtKB/TrEMBL
  ENSSSCG00060031630 UniProtKB/TrEMBL
  ENSSSCG00065033833 UniProtKB/TrEMBL
  ENSSSCG00070021235 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010389.5 UniProtKB/TrEMBL
  ENSSSCT00000048321 ENTREZGENE
  ENSSSCT00000048321.3 UniProtKB/TrEMBL
  ENSSSCT00000087498.2 UniProtKB/TrEMBL
  ENSSSCT00005043418.1 UniProtKB/TrEMBL
  ENSSSCT00015084377.1 UniProtKB/TrEMBL
  ENSSSCT00015084648.1 UniProtKB/TrEMBL
  ENSSSCT00015084875.1 UniProtKB/TrEMBL
  ENSSSCT00025001266.1 UniProtKB/TrEMBL
  ENSSSCT00025001272.1 UniProtKB/TrEMBL
  ENSSSCT00030102651.1 UniProtKB/TrEMBL
  ENSSSCT00030102667.1 UniProtKB/TrEMBL
  ENSSSCT00030102698.1 UniProtKB/TrEMBL
  ENSSSCT00030102730.1 UniProtKB/TrEMBL
  ENSSSCT00030102747.1 UniProtKB/TrEMBL
  ENSSSCT00035056387.1 UniProtKB/TrEMBL
  ENSSSCT00035056416.1 UniProtKB/TrEMBL
  ENSSSCT00035056447.1 UniProtKB/TrEMBL
  ENSSSCT00035056474.1 UniProtKB/TrEMBL
  ENSSSCT00035056479.1 UniProtKB/TrEMBL
  ENSSSCT00040013113.1 UniProtKB/TrEMBL
  ENSSSCT00040013184.1 UniProtKB/TrEMBL
  ENSSSCT00040013238.1 UniProtKB/TrEMBL
  ENSSSCT00040013245.1 UniProtKB/TrEMBL
  ENSSSCT00040013291.1 UniProtKB/TrEMBL
  ENSSSCT00045012932.1 UniProtKB/TrEMBL
  ENSSSCT00045012970.1 UniProtKB/TrEMBL
  ENSSSCT00045013014.1 UniProtKB/TrEMBL
  ENSSSCT00045013043.1 UniProtKB/TrEMBL
  ENSSSCT00045013102.1 UniProtKB/TrEMBL
  ENSSSCT00050092825.1 UniProtKB/TrEMBL
  ENSSSCT00050092827.1 UniProtKB/TrEMBL
  ENSSSCT00055033776.1 UniProtKB/TrEMBL
  ENSSSCT00055033832.1 UniProtKB/TrEMBL
  ENSSSCT00055033981.1 UniProtKB/TrEMBL
  ENSSSCT00055034110.1 UniProtKB/TrEMBL
  ENSSSCT00055034209.1 UniProtKB/TrEMBL
  ENSSSCT00060042780.1 UniProtKB/TrEMBL
  ENSSSCT00060042787.1 UniProtKB/TrEMBL
  ENSSSCT00060042798.1 UniProtKB/TrEMBL
  ENSSSCT00065046011.1 UniProtKB/TrEMBL
  ENSSSCT00065046036.1 UniProtKB/TrEMBL
  ENSSSCT00065046049.1 UniProtKB/TrEMBL
  ENSSSCT00065046053.1 UniProtKB/TrEMBL
  ENSSSCT00065046069.1 UniProtKB/TrEMBL
  ENSSSCT00070042224.1 UniProtKB/TrEMBL
  ENSSSCT00070042232.1 UniProtKB/TrEMBL
  ENSSSCT00070042238.1 UniProtKB/TrEMBL
  ENSSSCT00070042251.1 UniProtKB/TrEMBL
  ENSSSCT00070042257.1 UniProtKB/TrEMBL
  ENSSSCT00070042263.1 UniProtKB/TrEMBL
InterPro Slain UniProtKB/TrEMBL
NCBI Gene SLAIN1 ENTREZGENE
PANTHER PTHR22406 UniProtKB/TrEMBL
  SLAIN MOTIF-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam SLAIN UniProtKB/TrEMBL
UniProt A0A287A4A7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UYR7_PIG UniProtKB/TrEMBL
  A0A4X1V1I9 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V1L4_PIG UniProtKB/TrEMBL
  A0A4X1V1L6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V1M6_PIG UniProtKB/TrEMBL
  A0A5G2R7Y9_PIG UniProtKB/TrEMBL
  A0A8D0JD81_PIG UniProtKB/TrEMBL
  A0A8D0PP43_PIG UniProtKB/TrEMBL
  A0A8D0Y520 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YBD5_PIG UniProtKB/TrEMBL
  A0A8D0ZX36_PIG UniProtKB/TrEMBL
  A0A8D1DCL2_PIG UniProtKB/TrEMBL
  A0A8D1DCN0_PIG UniProtKB/TrEMBL
  A0A8D1DCS5_PIG UniProtKB/TrEMBL
  A0A8D1DCY1_PIG UniProtKB/TrEMBL
  A0A8D1GVC3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JZ34_PIG UniProtKB/TrEMBL
  A0A8D1QZX5_PIG UniProtKB/TrEMBL
  A0A8D1R139_PIG UniProtKB/TrEMBL
  A0A8D1U4S3_PIG UniProtKB/TrEMBL
UniProt Secondary F1RP74 UniProtKB/TrEMBL
VGNC ID VGNC:92909 ENTREZGENE