SMARCA4 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4) - Rat Genome Database

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Gene: SMARCA4 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4) Canis lupus familiaris
Analyze
Symbol: SMARCA4
Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
RGD ID: 12203251
Description: ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); ATP-dependent chromatin remodeler activity (ortholog); chromatin binding (ortholog); INVOLVED IN aorta development (ortholog); aortic smooth muscle cell differentiation (ortholog); blastocyst growth (ortholog); PARTICIPATES IN altered SWI/SNF family mediated chromatin remodeling pathway; cortisol signaling pathway; histone modification pathway; ASSOCIATED WITH adrenocortical carcinoma (ortholog); alpha-mannosidosis (ortholog); amyotrophic lateral sclerosis (ortholog); FOUND IN euchromatin (ortholog); male germ cell nucleus (ortholog); nBAF complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcription activator BRG1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12050,175,489 - 50,268,865 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2050,175,687 - 50,268,836 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2050,049,076 - 50,142,476 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02050,696,689 - 50,790,220 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2050,696,700 - 50,790,215 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12049,906,864 - 50,000,228 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,333,903 - 50,427,442 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,576,222 - 50,669,723 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
aorta development  (ISO)
aortic smooth muscle cell differentiation  (ISO)
blastocyst growth  (ISO)
blastocyst hatching  (ISO)
blood vessel development  (ISO)
cell morphogenesis  (ISO)
chromatin remodeling  (IEA,ISO)
coronary vasculature development  (ISO)
definitive erythrocyte differentiation  (ISO)
embryonic hindlimb morphogenesis  (ISO)
embryonic organ morphogenesis  (ISO)
epidermis morphogenesis  (ISO)
extracellular matrix organization  (ISO)
forebrain development  (ISO)
gene expression  (ISO)
glial cell fate determination  (ISO)
heart development  (ISO)
heart trabecula formation  (ISO)
hindbrain development  (ISO)
in utero embryonic development  (ISO)
keratinocyte differentiation  (ISO)
lens fiber cell development  (ISO)
liver development  (ISO)
negative regulation of androgen receptor signaling pathway  (IEA)
negative regulation of apoptotic process  (ISO)
negative regulation of cell growth  (IEA)
negative regulation of DNA-templated transcription  (IEA,ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
nervous system development  (ISO)
neural retina development  (IEA)
neurogenesis  (ISO)
nucleosome disassembly  (IEA,ISO)
outflow tract morphogenesis  (ISO)
pharyngeal arch artery morphogenesis  (ISO)
positive regulation by host of viral transcription  (IEA)
positive regulation of cell differentiation  (ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of cold-induced thermogenesis  (ISO)
positive regulation of DNA-binding transcription factor activity  (ISO)
positive regulation of DNA-templated transcription  (IEA)
positive regulation of glucose mediated signaling pathway  (IEA)
positive regulation of miRNA transcription  (IEA)
positive regulation of transcription by RNA polymerase II  (IEA,ISO)
positive regulation of transcription of nucleolar large rRNA by RNA polymerase I  (IEA)
positive regulation of Wnt signaling pathway  (IEA)
primitive erythrocyte differentiation  (ISO)
regulation of cell migration  (ISO)
regulation of DNA-templated transcription  (IEA)
RNA polymerase I preinitiation complex assembly  (IEA)
spermatid development  (ISO)
stem cell population maintenance  (ISO)
transcription by RNA polymerase II  (ISO)
transcription initiation-coupled chromatin remodeling  (ISO)
vasculogenesis  (ISO)
ventricular septum development  (ISO)

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SMARCA4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12050,175,489 - 50,268,865 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2050,175,687 - 50,268,836 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2050,049,076 - 50,142,476 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02050,696,689 - 50,790,220 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2050,696,700 - 50,790,215 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12049,906,864 - 50,000,228 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,333,903 - 50,427,442 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,576,222 - 50,669,723 (-)NCBIUU_Cfam_GSD_1.0
SMARCA4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381910,961,030 - 11,062,273 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1910,960,932 - 11,079,426 (+)EnsemblGRCh38hg38GRCh38
GRCh371911,071,706 - 11,172,949 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361910,932,606 - 11,033,953 (+)NCBINCBI36Build 36hg18NCBI36
Build 341910,932,605 - 11,033,953NCBI
Celera1910,966,440 - 11,067,798 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1910,649,456 - 10,749,943 (+)NCBIHuRef
CHM1_11911,072,949 - 11,174,225 (+)NCBICHM1_1
T2T-CHM13v2.01911,088,037 - 11,189,277 (+)NCBIT2T-CHM13v2.0
Smarca4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39921,527,377 - 21,615,526 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl921,527,465 - 21,615,526 (+)EnsemblGRCm39 Ensembl
GRCm38921,616,106 - 21,704,230 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl921,616,169 - 21,704,230 (+)EnsemblGRCm38mm10GRCm38
MGSCv37921,420,613 - 21,508,674 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36921,366,571 - 21,453,769 (+)NCBIMGSCv36mm8
Celera918,885,790 - 18,973,851 (+)NCBICelera
Cytogenetic Map9A3NCBI
cM Map97.84NCBI
Smarca4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,438,370 - 28,535,071 (+)NCBIGRCr8
mRatBN7.2820,167,717 - 20,258,975 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,167,717 - 20,258,975 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx824,200,412 - 24,292,032 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,495,960 - 22,587,578 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,397,343 - 20,488,586 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,648,323 - 22,739,468 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,648,323 - 22,739,468 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0822,702,277 - 22,793,519 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4820,720,915 - 20,812,157 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1820,787,909 - 20,796,297 (+)NCBI
Celera821,558,796 - 21,650,002 (+)NCBICelera
Cytogenetic Map8q13NCBI
Smarca4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554952,021,566 - 2,105,397 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554952,021,671 - 2,105,155 (+)NCBIChiLan1.0ChiLan1.0
SMARCA4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22015,881,885 - 15,982,873 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11914,880,580 - 14,981,524 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01910,515,216 - 10,616,155 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11911,250,006 - 11,334,952 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1911,250,006 - 11,334,952 (+)Ensemblpanpan1.1panPan2
Smarca4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118209,107,992 - 209,201,474 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,169,792 - 1,249,213 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,152,846 - 1,246,718 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMARCA4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl269,662,238 - 69,810,295 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1269,717,175 - 69,810,301 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2270,151,823 - 70,182,978 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SMARCA4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.169,943,162 - 10,044,476 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660749,892,049 - 9,994,184 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smarca4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248282,893,096 - 2,985,968 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248282,893,075 - 2,985,968 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SMARCA4
961 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014122041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014122042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014122043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014122044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014122045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014122046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022407044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038504232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038504233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038504234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038504235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038504236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038504237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038504238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038504239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000027907   ⟹   ENSCAFP00000025953
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2050,175,687 - 50,254,942 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000071736   ⟹   ENSCAFP00000046285
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2050,175,687 - 50,268,836 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000078567   ⟹   ENSCAFP00000061789
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2050,175,687 - 50,268,836 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845039029   ⟹   ENSCAFP00845030572
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2050,696,700 - 50,790,119 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845039267   ⟹   ENSCAFP00845030758
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2050,696,701 - 50,790,215 (-)Ensembl
RefSeq Acc Id: XM_014122041   ⟹   XP_013977516
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12050,175,489 - 50,249,637 (-)NCBI
Dog10K_Boxer_Tasha2050,049,076 - 50,134,461 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014122042   ⟹   XP_013977517
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12050,175,489 - 50,249,637 (-)NCBI
Dog10K_Boxer_Tasha2050,049,076 - 50,134,319 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014122043   ⟹   XP_013977518
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12050,175,489 - 50,249,637 (-)NCBI
Dog10K_Boxer_Tasha2050,049,076 - 50,134,319 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014122044   ⟹   XP_013977519
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12050,175,489 - 50,249,637 (-)NCBI
Dog10K_Boxer_Tasha2050,049,076 - 50,123,207 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014122045   ⟹   XP_013977520
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12050,175,489 - 50,249,637 (-)NCBI
Dog10K_Boxer_Tasha2050,049,076 - 50,134,319 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014122046   ⟹   XP_013977521
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12050,175,489 - 50,268,865 (-)NCBI
Dog10K_Boxer_Tasha2050,049,076 - 50,142,476 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022407044   ⟹   XP_022262752
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12050,175,489 - 50,249,637 (-)NCBI
Dog10K_Boxer_Tasha2050,049,076 - 50,134,459 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038428593   ⟹   XP_038284521
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02050,696,689 - 50,782,210 (-)NCBI
RefSeq Acc Id: XM_038428594   ⟹   XP_038284522
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02050,696,689 - 50,782,211 (-)NCBI
RefSeq Acc Id: XM_038428595   ⟹   XP_038284523
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02050,696,689 - 50,782,213 (-)NCBI
RefSeq Acc Id: XM_038428596   ⟹   XP_038284524
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02050,696,689 - 50,782,071 (-)NCBI
RefSeq Acc Id: XM_038428597   ⟹   XP_038284525
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02050,696,689 - 50,782,071 (-)NCBI
RefSeq Acc Id: XM_038428598   ⟹   XP_038284526
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02050,696,689 - 50,770,951 (-)NCBI
RefSeq Acc Id: XM_038428599   ⟹   XP_038284527
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02050,696,689 - 50,782,071 (-)NCBI
RefSeq Acc Id: XM_038428600   ⟹   XP_038284528
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02050,696,689 - 50,790,220 (-)NCBI
RefSeq Acc Id: XM_038455194   ⟹   XP_038311122
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2050,049,076 - 50,134,458 (-)NCBI
RefSeq Acc Id: XM_038504232   ⟹   XP_038360160
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12049,906,864 - 49,992,214 (-)NCBI
RefSeq Acc Id: XM_038504233   ⟹   XP_038360161
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12049,906,864 - 49,992,215 (-)NCBI
RefSeq Acc Id: XM_038504234   ⟹   XP_038360162
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12049,906,864 - 49,992,217 (-)NCBI
RefSeq Acc Id: XM_038504235   ⟹   XP_038360163
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12049,906,864 - 49,992,075 (-)NCBI
RefSeq Acc Id: XM_038504236   ⟹   XP_038360164
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12049,906,864 - 49,992,075 (-)NCBI
RefSeq Acc Id: XM_038504237   ⟹   XP_038360165
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12049,906,864 - 49,980,965 (-)NCBI
RefSeq Acc Id: XM_038504238   ⟹   XP_038360166
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12049,906,864 - 49,992,075 (-)NCBI
RefSeq Acc Id: XM_038504239   ⟹   XP_038360167
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12049,906,864 - 50,000,228 (-)NCBI
RefSeq Acc Id: XM_038567259   ⟹   XP_038423187
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02050,576,222 - 50,661,707 (-)NCBI
RefSeq Acc Id: XM_038567260   ⟹   XP_038423188
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02050,576,222 - 50,661,708 (-)NCBI
RefSeq Acc Id: XM_038567261   ⟹   XP_038423189
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02050,576,222 - 50,661,710 (-)NCBI
RefSeq Acc Id: XM_038567262   ⟹   XP_038423190
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02050,576,222 - 50,661,568 (-)NCBI
RefSeq Acc Id: XM_038567263   ⟹   XP_038423191
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02050,576,222 - 50,661,568 (-)NCBI
RefSeq Acc Id: XM_038567264   ⟹   XP_038423192
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02050,576,222 - 50,650,458 (-)NCBI
RefSeq Acc Id: XM_038567265   ⟹   XP_038423193
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02050,576,222 - 50,661,568 (-)NCBI
RefSeq Acc Id: XM_038567266   ⟹   XP_038423194
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02050,576,222 - 50,669,723 (-)NCBI
RefSeq Acc Id: XM_038631410   ⟹   XP_038487338
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02050,333,903 - 50,419,428 (-)NCBI
RefSeq Acc Id: XM_038631411   ⟹   XP_038487339
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02050,333,903 - 50,419,429 (-)NCBI
RefSeq Acc Id: XM_038631412   ⟹   XP_038487340
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02050,333,903 - 50,419,431 (-)NCBI
RefSeq Acc Id: XM_038631413   ⟹   XP_038487341
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02050,333,903 - 50,419,289 (-)NCBI
RefSeq Acc Id: XM_038631414   ⟹   XP_038487342
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02050,333,903 - 50,419,289 (-)NCBI
RefSeq Acc Id: XM_038631415   ⟹   XP_038487343
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02050,333,903 - 50,408,175 (-)NCBI
RefSeq Acc Id: XM_038631416   ⟹   XP_038487344
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02050,333,903 - 50,419,289 (-)NCBI
RefSeq Acc Id: XM_038631417   ⟹   XP_038487345
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02050,333,903 - 50,427,442 (-)NCBI
Protein Sequences
Protein RefSeqs XP_013977516 (Get FASTA)   NCBI Sequence Viewer  
  XP_013977517 (Get FASTA)   NCBI Sequence Viewer  
  XP_013977518 (Get FASTA)   NCBI Sequence Viewer  
  XP_013977519 (Get FASTA)   NCBI Sequence Viewer  
  XP_013977520 (Get FASTA)   NCBI Sequence Viewer  
  XP_013977521 (Get FASTA)   NCBI Sequence Viewer  
  XP_022262752 (Get FASTA)   NCBI Sequence Viewer  
  XP_038284521 (Get FASTA)   NCBI Sequence Viewer  
  XP_038284522 (Get FASTA)   NCBI Sequence Viewer  
  XP_038284523 (Get FASTA)   NCBI Sequence Viewer  
  XP_038284524 (Get FASTA)   NCBI Sequence Viewer  
  XP_038284525 (Get FASTA)   NCBI Sequence Viewer  
  XP_038284526 (Get FASTA)   NCBI Sequence Viewer  
  XP_038284527 (Get FASTA)   NCBI Sequence Viewer  
  XP_038284528 (Get FASTA)   NCBI Sequence Viewer  
  XP_038311122 (Get FASTA)   NCBI Sequence Viewer  
  XP_038360160 (Get FASTA)   NCBI Sequence Viewer  
  XP_038360161 (Get FASTA)   NCBI Sequence Viewer  
  XP_038360162 (Get FASTA)   NCBI Sequence Viewer  
  XP_038360163 (Get FASTA)   NCBI Sequence Viewer  
  XP_038360164 (Get FASTA)   NCBI Sequence Viewer  
  XP_038360165 (Get FASTA)   NCBI Sequence Viewer  
  XP_038360166 (Get FASTA)   NCBI Sequence Viewer  
  XP_038360167 (Get FASTA)   NCBI Sequence Viewer  
  XP_038423187 (Get FASTA)   NCBI Sequence Viewer  
  XP_038423188 (Get FASTA)   NCBI Sequence Viewer  
  XP_038423189 (Get FASTA)   NCBI Sequence Viewer  
  XP_038423190 (Get FASTA)   NCBI Sequence Viewer  
  XP_038423191 (Get FASTA)   NCBI Sequence Viewer  
  XP_038423192 (Get FASTA)   NCBI Sequence Viewer  
  XP_038423193 (Get FASTA)   NCBI Sequence Viewer  
  XP_038423194 (Get FASTA)   NCBI Sequence Viewer  
  XP_038487338 (Get FASTA)   NCBI Sequence Viewer  
  XP_038487339 (Get FASTA)   NCBI Sequence Viewer  
  XP_038487340 (Get FASTA)   NCBI Sequence Viewer  
  XP_038487341 (Get FASTA)   NCBI Sequence Viewer  
  XP_038487342 (Get FASTA)   NCBI Sequence Viewer  
  XP_038487343 (Get FASTA)   NCBI Sequence Viewer  
  XP_038487344 (Get FASTA)   NCBI Sequence Viewer  
  XP_038487345 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000046285.2
  ENSCAFP00000061789.1
  ENSCAFP00030035848.1
  ENSCAFP00040027911.1
  ENSCAFP00845030572
  ENSCAFP00845030572.1
  ENSCAFP00845030758
  ENSCAFP00845030758.1
RefSeq Acc Id: XP_013977521   ⟸   XM_014122046
- Peptide Label: isoform X8
- UniProtKB: A0A8C0LHT5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013977518   ⟸   XM_014122043
- Peptide Label: isoform X5
- UniProtKB: A0A8C0LMB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013977517   ⟸   XM_014122042
- Peptide Label: isoform X4
- UniProtKB: A0A8C0T0C2 (UniProtKB/TrEMBL),   A0A8I3PJ19 (UniProtKB/TrEMBL),   A0A8C0LHT5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013977516   ⟸   XM_014122041
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LMB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013977520   ⟸   XM_014122045
- Peptide Label: isoform X7
- UniProtKB: A0A8I3PJC1 (UniProtKB/TrEMBL),   A0A8P0NWF3 (UniProtKB/TrEMBL),   A0A8C0LMB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013977519   ⟸   XM_014122044
- Peptide Label: isoform X6
- UniProtKB: A0A8C0LMB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022262752   ⟸   XM_022407044
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LMB7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000061789   ⟸   ENSCAFT00000078567
Ensembl Acc Id: ENSCAFP00000025953   ⟸   ENSCAFT00000027907
Ensembl Acc Id: ENSCAFP00000046285   ⟸   ENSCAFT00000071736
RefSeq Acc Id: XP_038360167   ⟸   XM_038504239
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038360162   ⟸   XM_038504234
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038360161   ⟸   XM_038504233
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038360160   ⟸   XM_038504232
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038360166   ⟸   XM_038504238
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038360164   ⟸   XM_038504236
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038360163   ⟸   XM_038504235
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038360165   ⟸   XM_038504237
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038487345   ⟸   XM_038631417
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038487340   ⟸   XM_038631412
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038487339   ⟸   XM_038631411
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038487338   ⟸   XM_038631410
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038487344   ⟸   XM_038631416
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038487342   ⟸   XM_038631414
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038487341   ⟸   XM_038631413
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038487343   ⟸   XM_038631415
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038284528   ⟸   XM_038428600
- Peptide Label: isoform X8
- UniProtKB: A0A8C0LHT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038284523   ⟸   XM_038428595
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LMB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038284522   ⟸   XM_038428594
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LMB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038284521   ⟸   XM_038428593
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LMB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038284527   ⟸   XM_038428599
- Peptide Label: isoform X7
- UniProtKB: A0A8I3PJC1 (UniProtKB/TrEMBL),   A0A8P0NWF3 (UniProtKB/TrEMBL),   A0A8C0LMB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038284525   ⟸   XM_038428597
- Peptide Label: isoform X5
- UniProtKB: A0A8C0LMB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038284524   ⟸   XM_038428596
- Peptide Label: isoform X4
- UniProtKB: A0A8C0T0C2 (UniProtKB/TrEMBL),   A0A8I3PJ19 (UniProtKB/TrEMBL),   A0A8C0LHT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038284526   ⟸   XM_038428598
- Peptide Label: isoform X6
- UniProtKB: A0A8C0LMB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311122   ⟸   XM_038455194
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LMB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423194   ⟸   XM_038567266
- Peptide Label: isoform X8
- UniProtKB: A0A8C0LHT5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423189   ⟸   XM_038567261
- Peptide Label: isoform X3
- UniProtKB: A0A8C0LMB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423188   ⟸   XM_038567260
- Peptide Label: isoform X2
- UniProtKB: A0A8C0LMB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423187   ⟸   XM_038567259
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LMB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423193   ⟸   XM_038567265
- Peptide Label: isoform X7
- UniProtKB: A0A8C0LMB7 (UniProtKB/TrEMBL),   A0A8I3PJC1 (UniProtKB/TrEMBL),   A0A8P0NWF3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423191   ⟸   XM_038567263
- Peptide Label: isoform X5
- UniProtKB: A0A8C0LMB7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423190   ⟸   XM_038567262
- Peptide Label: isoform X4
- UniProtKB: A0A8C0LHT5 (UniProtKB/TrEMBL),   A0A8C0T0C2 (UniProtKB/TrEMBL),   A0A8I3PJ19 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423192   ⟸   XM_038567264
- Peptide Label: isoform X6
- UniProtKB: A0A8C0LMB7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845030758   ⟸   ENSCAFT00845039267
Ensembl Acc Id: ENSCAFP00845030572   ⟸   ENSCAFT00845039029
Protein Domains
Bromo   Helicase ATP-binding   Helicase C-terminal   HSA   QLQ


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000017584 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030022345 UniProtKB/TrEMBL
  ENSCAFG00040017335 UniProtKB/TrEMBL
  ENSCAFG00845022085 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000071736.2 UniProtKB/TrEMBL
  ENSCAFT00000078567.2 UniProtKB/TrEMBL
  ENSCAFT00030041088.1 UniProtKB/TrEMBL
  ENSCAFT00040032106.1 UniProtKB/TrEMBL
  ENSCAFT00845039029 ENTREZGENE
  ENSCAFT00845039029.1 UniProtKB/TrEMBL
  ENSCAFT00845039267 ENTREZGENE
  ENSCAFT00845039267.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
  1.20.920.10 UniProtKB/TrEMBL
  3.40.5.120 UniProtKB/TrEMBL
  3.40.50.10810 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro BRG1 UniProtKB/TrEMBL
  BRK_domain UniProtKB/TrEMBL
  BRK_sf UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  Bromodomain_CS UniProtKB/TrEMBL
  Gln-Leu-Gln_QLQ UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  HSA_dom UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SnAC UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2/RAD54-like_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
NCBI Gene SMARCA4 ENTREZGENE
PANTHER PTHR10799:SF76 UniProtKB/TrEMBL
  SNF2/RAD54 HELICASE FAMILY UniProtKB/TrEMBL
Pfam BRK UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  HSA UniProtKB/TrEMBL
  QLQ UniProtKB/TrEMBL
  SnAC UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE BROMODOMAIN_1 UniProtKB/TrEMBL
  BROMODOMAIN_2 UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  HSA UniProtKB/TrEMBL
  QLQ UniProtKB/TrEMBL
SMART BRK UniProtKB/TrEMBL
  BROMO UniProtKB/TrEMBL
  DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
  HSA UniProtKB/TrEMBL
  QLQ UniProtKB/TrEMBL
  SnAC UniProtKB/TrEMBL
Superfamily-SCOP SSF160481 UniProtKB/TrEMBL
  SSF47370 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A8C0LHT5 ENTREZGENE
  A0A8C0LMB7 ENTREZGENE
  A0A8C0T0C2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PJ19 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PJC1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NWF3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:46530 ENTREZGENE