DNAH9 (dynein axonemal heavy chain 9) - Rat Genome Database

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Gene: DNAH9 (dynein axonemal heavy chain 9) Canis lupus familiaris
Analyze
Symbol: DNAH9
Name: dynein axonemal heavy chain 9
RGD ID: 12202088
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); dynein intermediate chain binding (inferred); INVOLVED IN cerebrospinal fluid circulation (ortholog); establishment of localization in cell (ortholog); mucociliary clearance (ortholog); ASSOCIATED WITH Cardiovascular Abnormalities (ortholog); congenital heart disease (ortholog); genetic disease (ortholog); FOUND IN glial cell projection (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dynein heavy chain 9, axonemal
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1535,730,394 - 36,060,154 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl535,730,394 - 36,058,945 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha535,868,460 - 36,197,847 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0535,837,559 - 36,167,438 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl535,837,491 - 36,166,903 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1535,804,266 - 36,134,631 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0535,758,579 - 36,088,337 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0535,942,526 - 36,272,584 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
DNAH9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1535,730,394 - 36,060,154 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl535,730,394 - 36,058,945 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha535,868,460 - 36,197,847 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0535,837,559 - 36,167,438 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl535,837,491 - 36,166,903 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1535,804,266 - 36,134,631 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0535,758,579 - 36,088,337 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0535,942,526 - 36,272,584 (+)NCBIUU_Cfam_GSD_1.0
DNAH9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381711,598,470 - 11,969,748 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1711,598,470 - 11,969,748 (+)EnsemblGRCh38hg38GRCh38
GRCh371711,501,787 - 11,873,065 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361711,442,473 - 11,813,790 (+)NCBINCBI36Build 36hg18NCBI36
Celera1711,532,499 - 11,903,633 (+)NCBICelera
Cytogenetic Map17p12NCBI
HuRef1711,403,416 - 11,773,976 (+)NCBIHuRef
CHM1_11711,510,987 - 11,882,195 (+)NCBICHM1_1
T2T-CHM13v2.01711,506,869 - 11,877,746 (+)NCBIT2T-CHM13v2.0
Dnah9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391165,722,150 - 66,059,379 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1165,722,108 - 66,059,377 (-)EnsemblGRCm39 Ensembl
GRCm381165,831,324 - 66,168,581 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1165,831,282 - 66,168,551 (-)EnsemblGRCm38mm10GRCm38
MGSCv371165,644,826 - 65,982,053 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361165,647,519 - 65,984,746 (-)NCBIMGSCv36mm8
Celera1172,766,026 - 73,104,526 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1140.53NCBI
Dnah9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81050,996,796 - 51,363,977 (-)NCBIGRCr8
mRatBN7.21050,496,174 - 50,864,909 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1050,497,688 - 50,864,949 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01052,351,226 - 52,711,289 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1052,351,192 - 52,710,862 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01052,101,007 - 52,465,444 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41052,704,651 - 52,857,689 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11052,718,277 - 52,726,147 (-)NCBI
Celera1049,698,523 - 50,053,917 (-)NCBICelera
Cytogenetic Map10q24NCBI
Dnah9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554675,357,500 - 5,677,755 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554675,357,500 - 5,677,144 (-)NCBIChiLan1.0ChiLan1.0
DNAH9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21961,765,429 - 62,146,388 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11766,572,134 - 66,953,255 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01739,673,338 - 40,047,090 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11744,422,857 - 44,796,983 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1744,422,928 - 44,796,983 (-)Ensemblpanpan1.1panPan2
Dnah9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560250,864,603 - 51,196,370 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365954,338,831 - 4,670,498 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365954,338,831 - 4,671,178 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAH9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1256,045,381 - 56,358,236 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11256,045,079 - 56,366,327 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21259,166,522 - 59,264,325 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DNAH9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11610,947,254 - 11,316,414 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1610,948,014 - 11,317,291 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660599,941,269 - 10,314,120 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnah9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478614,031,718 - 14,411,533 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478614,031,785 - 14,411,469 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DNAH9
3308 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000028231   ⟹   ENSCAFP00000026253
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl535,730,394 - 36,058,945 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000074330   ⟹   ENSCAFP00000054387
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl535,730,394 - 36,058,945 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000089555   ⟹   ENSCAFP00000045028
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl535,730,394 - 35,742,587 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845005658   ⟹   ENSCAFP00845004489
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl535,837,491 - 36,166,903 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845005765   ⟹   ENSCAFP00845004573
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl535,837,491 - 36,166,903 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845006074   ⟹   ENSCAFP00845004829
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl535,837,491 - 36,166,903 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845006117   ⟹   ENSCAFP00845004865
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl535,837,491 - 35,850,752 (+)Ensembl
RefSeq Acc Id: XM_038475708   ⟹   XP_038331636
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1535,804,266 - 36,134,631 (+)NCBI
RefSeq Acc Id: XM_038516504   ⟹   XP_038372432
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha535,868,460 - 36,197,847 (+)NCBI
RefSeq Acc Id: XM_038536892   ⟹   XP_038392820
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0535,942,526 - 36,272,584 (+)NCBI
RefSeq Acc Id: XM_038601041   ⟹   XP_038456969
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0535,758,579 - 36,088,337 (+)NCBI
RefSeq Acc Id: XM_038665610   ⟹   XP_038521538
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0535,837,559 - 36,167,438 (+)NCBI
Ensembl Acc Id: ENSCAFP00000054387   ⟸   ENSCAFT00000074330
Ensembl Acc Id: ENSCAFP00000026253   ⟸   ENSCAFT00000028231
Ensembl Acc Id: ENSCAFP00000045028   ⟸   ENSCAFT00000089555
RefSeq Acc Id: XP_038331636   ⟸   XM_038475708
RefSeq Acc Id: XP_038456969   ⟸   XM_038601041
RefSeq Acc Id: XP_038521538   ⟸   XM_038665610
- UniProtKB: A0A8C0JJH6 (UniProtKB/TrEMBL),   A0A8I3RR76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038372432   ⟸   XM_038516504
- UniProtKB: A0A8C0JJH6 (UniProtKB/TrEMBL),   A0A8P0NJ80 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038392820   ⟸   XM_038536892
- UniProtKB: A0A8C0JJH6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845004489   ⟸   ENSCAFT00845005658
Ensembl Acc Id: ENSCAFP00845004573   ⟸   ENSCAFT00845005765
Ensembl Acc Id: ENSCAFP00845004865   ⟸   ENSCAFT00845006117
Ensembl Acc Id: ENSCAFP00845004829   ⟸   ENSCAFT00845006074
Protein Domains
AAA+ ATPase   Dynein heavy chain tail


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000017769 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030002283 UniProtKB/TrEMBL
  ENSCAFG00040018800 UniProtKB/TrEMBL
  ENSCAFG00845003182 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000028231.5 UniProtKB/TrEMBL
  ENSCAFT00000074330.2 UniProtKB/TrEMBL
  ENSCAFT00000089555.2 UniProtKB/TrEMBL
  ENSCAFT00000099299.1 UniProtKB/TrEMBL
  ENSCAFT00030004292.1 UniProtKB/TrEMBL
  ENSCAFT00040035206.1 UniProtKB/TrEMBL
  ENSCAFT00845005658 ENTREZGENE
  ENSCAFT00845005658.1 UniProtKB/TrEMBL
  ENSCAFT00845005765.1 UniProtKB/TrEMBL
  ENSCAFT00845006074.1 UniProtKB/TrEMBL
  ENSCAFT00845006117.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.2620 UniProtKB/TrEMBL
  1.10.472.130 UniProtKB/TrEMBL
  1.10.8.1220 UniProtKB/TrEMBL
  1.10.8.710 UniProtKB/TrEMBL
  1.10.8.720 UniProtKB/TrEMBL
  1.20.1270.280 UniProtKB/TrEMBL
  1.20.140.100 UniProtKB/TrEMBL
  1.20.58.1120 UniProtKB/TrEMBL
  1.20.920.20 UniProtKB/TrEMBL
  1.20.920.30 UniProtKB/TrEMBL
  3.10.490.20 UniProtKB/TrEMBL
  3.20.180.20 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  6.10.140.1060 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  AAA_6 UniProtKB/TrEMBL
  AAA_9 UniProtKB/TrEMBL
  AAA_lid_11 UniProtKB/TrEMBL
  AAA_lid_11_sf UniProtKB/TrEMBL
  DHC_fam UniProtKB/TrEMBL
  DNAH3_AAA_lid_1 UniProtKB/TrEMBL
  Dynein_2_N UniProtKB/TrEMBL
  Dynein_AAA1S UniProtKB/TrEMBL
  Dynein_AAA5_ext UniProtKB/TrEMBL
  Dynein_C UniProtKB/TrEMBL
  Dynein_C_barrel UniProtKB/TrEMBL
  Dynein_HC_stalk UniProtKB/TrEMBL
  Dynein_heavy_chain_D4_dom UniProtKB/TrEMBL
  Dynein_heavy_D6_P-loop UniProtKB/TrEMBL
  Dynein_heavy_linker UniProtKB/TrEMBL
  Dynein_heavy_tail UniProtKB/TrEMBL
  Dynein_linker_3 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene DNAH9 ENTREZGENE
PANTHER DYNEIN AXONEMAL HEAVY CHAIN 5 UniProtKB/TrEMBL
  MALE FERTILITY FACTOR KL5 UniProtKB/TrEMBL
Pfam AAA_6 UniProtKB/TrEMBL
  AAA_7 UniProtKB/TrEMBL
  AAA_8 UniProtKB/TrEMBL
  AAA_9 UniProtKB/TrEMBL
  AAA_lid_1 UniProtKB/TrEMBL
  AAA_lid_11 UniProtKB/TrEMBL
  DHC_N1 UniProtKB/TrEMBL
  DHC_N2 UniProtKB/TrEMBL
  Dynein_AAA_lid UniProtKB/TrEMBL
  Dynein_C UniProtKB/TrEMBL
  Dynein_heavy UniProtKB/TrEMBL
  PF12777 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C0JJH6 ENTREZGENE
  A0A8C0T2H0_CANLF UniProtKB/TrEMBL
  A0A8I3MI02_CANLF UniProtKB/TrEMBL
  A0A8I3MI30_CANLF UniProtKB/TrEMBL
  A0A8I3RR76 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RR89_CANLF UniProtKB/TrEMBL
  A0A8P0NJ80 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0P3V2_CANLF UniProtKB/TrEMBL
  A0A8P0TQY4_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:40019 ENTREZGENE