PON3 (paraoxonase 3) - Rat Genome Database

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Gene: PON3 (paraoxonase 3) Canis lupus familiaris
Analyze
Symbol: PON3
Name: paraoxonase 3
RGD ID: 12191076
Description: ENCODES a protein that exhibits acyl-L-homoserine-lactone lactonohydrolase activity (ortholog); arylesterase activity (ortholog); dihydrocoumarin hydrolase activity (ortholog); INVOLVED IN carboxylic acid catabolic process (ortholog); coumarin catabolic process (ortholog); establishment of localization in cell (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); atherosclerosis (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serum paraoxonase/lactonase 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11420,615,180 - 20,642,807 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1420,565,641 - 20,642,985 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1420,174,181 - 20,202,180 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01420,437,560 - 20,465,291 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1420,437,057 - 20,465,276 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11420,582,215 - 20,609,982 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01420,317,344 - 20,345,279 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01420,574,717 - 20,602,546 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PON3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11420,615,180 - 20,642,807 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1420,565,641 - 20,642,985 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1420,174,181 - 20,202,180 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01420,437,560 - 20,465,291 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1420,437,057 - 20,465,276 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11420,582,215 - 20,609,982 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01420,317,344 - 20,345,279 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01420,574,717 - 20,602,546 (-)NCBIUU_Cfam_GSD_1.0
PON3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38795,359,872 - 95,396,375 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl795,359,872 - 95,396,375 (-)EnsemblGRCh38hg38GRCh38
GRCh37794,989,184 - 95,025,687 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36794,827,120 - 94,863,623 (-)NCBINCBI36Build 36hg18NCBI36
Build 34794,633,925 - 94,670,313NCBI
Celera789,687,888 - 89,724,394 (-)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef789,596,240 - 89,632,745 (-)NCBIHuRef
CHM1_1794,919,217 - 94,955,721 (-)NCBICHM1_1
T2T-CHM13v2.0796,596,019 - 96,632,523 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2794,318,186 - 94,354,692 (-)NCBI
Pon3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3965,216,253 - 5,256,236 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl65,220,852 - 5,256,286 (-)EnsemblGRCm39 Ensembl
GRCm3865,216,256 - 5,256,285 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl65,220,852 - 5,256,286 (-)EnsemblGRCm38mm10GRCm38
MGSCv3765,170,852 - 5,206,233 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3665,170,852 - 5,206,233 (-)NCBIMGSCv36mm8
Celera65,367,370 - 5,403,410 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.99NCBI
Pon3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8434,323,546 - 34,350,244 (-)NCBIGRCr8
mRatBN7.2433,356,983 - 33,383,681 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl433,349,168 - 33,383,855 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx438,316,014 - 38,342,716 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0434,242,154 - 34,268,854 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0432,651,934 - 32,678,640 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0430,311,981 - 30,338,679 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl430,311,982 - 30,338,679 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0430,218,888 - 30,245,586 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4430,000,505 - 30,027,203 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1430,039,834 - 30,066,533 (-)NCBI
Celera428,883,809 - 28,910,507 (-)NCBICelera
Cytogenetic Map4q21NCBI
Pon3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543211,942,922 - 11,983,504 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543211,945,383 - 11,983,417 (-)NCBIChiLan1.0ChiLan1.0
PON3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26113,197,534 - 113,238,696 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17161,462,173 - 161,503,379 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0787,314,788 - 87,354,020 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17100,902,432 - 100,941,611 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7100,902,432 - 100,941,611 (-)Ensemblpanpan1.1panPan2
Pon3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511833,933,867 - 33,961,080 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365854,902,289 - 4,929,556 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365854,902,430 - 4,928,377 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PON3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl974,991,277 - 75,017,942 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1974,983,040 - 75,017,947 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2982,185,788 - 82,193,864 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PON3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12153,645,406 - 53,675,066 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2153,645,384 - 53,674,812 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604250,670,307 - 50,702,561 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pon3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248132,022,482 - 2,051,330 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248132,023,025 - 2,051,319 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PON3
227 total Variants

Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022427375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022427376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038435504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038494580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038556863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038556864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038556865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038620802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038620803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038620804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038686494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_532467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00845036491   ⟹   ENSCAFP00845028557
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1420,437,057 - 20,465,276 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845036571   ⟹   ENSCAFP00845028618
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1420,438,204 - 20,464,633 (-)Ensembl
RefSeq Acc Id: XM_022427375   ⟹   XP_022283083
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11420,615,180 - 20,642,807 (-)NCBI
Dog10K_Boxer_Tasha1420,174,181 - 20,201,989 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038435504   ⟹   XP_038291432
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1420,174,181 - 20,202,180 (-)NCBI
RefSeq Acc Id: XM_038494578   ⟹   XP_038350506
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11420,582,215 - 20,609,982 (-)NCBI
RefSeq Acc Id: XM_038494579   ⟹   XP_038350507
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11420,582,215 - 20,609,791 (-)NCBI
RefSeq Acc Id: XM_038494580   ⟹   XP_038350508
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11420,582,215 - 20,609,368 (-)NCBI
RefSeq Acc Id: XM_038556863   ⟹   XP_038412791
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01420,574,717 - 20,602,546 (-)NCBI
RefSeq Acc Id: XM_038556864   ⟹   XP_038412792
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01420,574,717 - 20,602,355 (-)NCBI
RefSeq Acc Id: XM_038556865   ⟹   XP_038412793
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01420,574,717 - 20,601,941 (-)NCBI
RefSeq Acc Id: XM_038620802   ⟹   XP_038476730
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01420,317,344 - 20,345,279 (-)NCBI
RefSeq Acc Id: XM_038620803   ⟹   XP_038476731
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01420,317,344 - 20,345,088 (-)NCBI
RefSeq Acc Id: XM_038620804   ⟹   XP_038476732
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01420,317,344 - 20,344,679 (-)NCBI
RefSeq Acc Id: XM_038686492   ⟹   XP_038542420
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01420,437,560 - 20,465,291 (-)NCBI
RefSeq Acc Id: XM_038686493   ⟹   XP_038542421
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01420,437,560 - 20,465,100 (-)NCBI
RefSeq Acc Id: XM_038686494   ⟹   XP_038542422
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01420,437,560 - 20,464,677 (-)NCBI
RefSeq Acc Id: XM_532467   ⟹   XP_532467
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11420,615,180 - 20,642,396 (-)NCBI
Dog10K_Boxer_Tasha1420,174,181 - 20,201,580 (-)NCBI
Sequence:
RefSeq Acc Id: XP_532467   ⟸   XM_532467
- Peptide Label: isoform X3
- UniProtKB: A0A8C0KDK5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022283083   ⟸   XM_022427375
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_038350506   ⟸   XM_038494578
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038350507   ⟸   XM_038494579
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038350508   ⟸   XM_038494580
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038476730   ⟸   XM_038620802
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038476731   ⟸   XM_038620803
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038476732   ⟸   XM_038620804
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038542420   ⟸   XM_038686492
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038542421   ⟸   XM_038686493
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038542422   ⟸   XM_038686494
- Peptide Label: isoform X3
- UniProtKB: A0A8C0KDK5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038291432   ⟸   XM_038435504
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038412791   ⟸   XM_038556863
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038412792   ⟸   XM_038556864
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038412793   ⟸   XM_038556865
- Peptide Label: isoform X3
- UniProtKB: A0A8C0KDK5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845028618   ⟸   ENSCAFT00845036571
Ensembl Acc Id: ENSCAFP00845028557   ⟸   ENSCAFT00845036491

Promoters
RGD ID:13685755
Promoter ID:EPDNEW_C3825
Type:single initiation site
Name:PON3_1
Description:paraoxonase 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11420,642,544 - 20,642,604EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000002118 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030018030 UniProtKB/TrEMBL
  ENSCAFG00040013767 UniProtKB/TrEMBL
  ENSCAFG00845020697 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000064726.2 UniProtKB/TrEMBL
  ENSCAFT00000086443.2 UniProtKB/TrEMBL
  ENSCAFT00030033598.1 UniProtKB/TrEMBL
  ENSCAFT00040025556.1 UniProtKB/TrEMBL
  ENSCAFT00845036491.1 UniProtKB/TrEMBL
  ENSCAFT00845036571.1 UniProtKB/TrEMBL
Gene3D-CATH 2.120.10.30 UniProtKB/TrEMBL
InterPro 6-blade_b-propeller_TolB-like UniProtKB/TrEMBL
  Arylesterase UniProtKB/TrEMBL
  Serum_paraoxonase/arylesterase UniProtKB/TrEMBL
NCBI Gene PON3 ENTREZGENE
PANTHER PARAOXONASE UniProtKB/TrEMBL
  SERUM PARAOXONASE/LACTONASE 3 UniProtKB/TrEMBL
Pfam Arylesterase UniProtKB/TrEMBL
PRINTS PARAOXONASE UniProtKB/TrEMBL
Superfamily-SCOP Calcium-dependent phosphotriesterase UniProtKB/TrEMBL
UniProt A0A8C0KDK5 ENTREZGENE
  A0A8C0SK41_CANLF UniProtKB/TrEMBL
  A0A8I3PAM3_CANLF UniProtKB/TrEMBL
  A0A8I3PAS3_CANLF UniProtKB/TrEMBL
  A0A8P0T8A9_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:44814 ENTREZGENE