LOC489851 (cytochrome P450 3A12-like) - Rat Genome Database

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Gene: LOC489851 (cytochrome P450 3A12-like) Canis lupus familiaris
Analyze
Symbol: LOC489851 (Ensembl: CYP3A26)
Name: cytochrome P450 3A12-like (Ensembl:cytochrome P450 3A26)
RGD ID: 12186391
Description: ENCODES a protein that exhibits estrogen 16-alpha-hydroxylase activity (ortholog); estrogen 2-hydroxylase activity (ortholog); retinoic acid 4-hydroxylase activity (ortholog); INVOLVED IN estrogen metabolic process (ortholog); lipid hydroxylation (ortholog); regulation of gene expression (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Bonobo
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.169,722,401 - 9,758,759 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha611,359,362 - 11,433,992 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0 Ensembl69,659,807 - 9,864,478 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.169,509,502 - 9,560,827 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.069,560,177 - 9,589,987 (-)NCBIUNSW_CanFamBas_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC489851
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.169,722,401 - 9,758,759 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha611,359,362 - 11,433,992 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0 Ensembl69,659,807 - 9,864,478 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.169,509,502 - 9,560,827 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.069,560,177 - 9,589,987 (-)NCBIUNSW_CanFamBas_1.0
CYP3A7-CYP3A51P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38799,684,677 - 99,735,196 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl799,684,957 - 99,735,102 (-)EnsemblGRCh38hg38GRCh38
GRCh37799,282,300 - 99,332,819 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q22.1NCBI
HuRef793,918,828 - 93,969,254 (-)NCBIHuRef
CHM1_1799,212,401 - 99,262,931 (-)NCBICHM1_1
T2T-CHM13v2.07100,924,196 - 100,974,716 (-)NCBIT2T-CHM13v2.0
Cyp3a41a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395145,630,859 - 145,656,946 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5145,630,859 - 145,656,946 (-)EnsemblGRCm39 Ensembl
GRCm385145,694,049 - 145,720,136 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5145,694,049 - 145,720,136 (-)EnsemblGRCm38mm10GRCm38
MGSCv375146,505,624 - 146,531,712 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365145,998,284 - 146,024,370 (-)NCBIMGSCv36mm8
Cytogenetic Map5G2NCBI
cM Map585.17NCBI
CYP3A67
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26117,562,999 - 117,591,429 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17165,826,398 - 165,856,064 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0791,678,209 - 91,707,321 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17105,159,958 - 105,208,906 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7105,160,420 - 105,208,799 (-)Ensemblpanpan1.1panPan2

Variants

.
Variants in LOC489851
1904 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005621073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014114230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022419681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038451524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038451525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038478085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038478086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038478087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038478088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038538839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038538841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038538843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038538847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038538854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038538860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038538861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038589238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038589239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038603444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_546969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005360314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010001365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_038478085   ⟹   XP_038334013
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.169,530,964 - 9,560,823 (-)NCBI
RefSeq Acc Id: XM_038478086   ⟹   XP_038334014
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.169,530,964 - 9,546,377 (-)NCBI
RefSeq Acc Id: XM_038478087   ⟹   XP_038334015
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.169,509,502 - 9,560,827 (-)NCBI
RefSeq Acc Id: XM_038478088   ⟹   XP_038334016
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.169,509,502 - 9,560,826 (-)NCBI
RefSeq Acc Id: XM_038538839   ⟹   XP_038394767
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha611,403,279 - 11,431,790 (-)NCBI
RefSeq Acc Id: XM_038538841   ⟹   XP_038394769
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha611,361,979 - 11,432,292 (-)NCBI
RefSeq Acc Id: XM_038538843   ⟹   XP_038394771
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha611,403,279 - 11,433,988 (-)NCBI
RefSeq Acc Id: XM_038538847   ⟹   XP_038394775
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha611,361,979 - 11,433,992 (-)NCBI
RefSeq Acc Id: XM_038538854   ⟹   XP_038394782
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha611,403,279 - 11,427,757 (-)NCBI
RefSeq Acc Id: XM_038538860   ⟹   XP_038394788
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha611,403,279 - 11,423,307 (-)NCBI
RefSeq Acc Id: XM_038538861   ⟹   XP_038394789
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha611,403,279 - 11,419,513 (-)NCBI
RefSeq Acc Id: XM_038603443   ⟹   XP_038459371
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.069,560,177 - 9,589,987 (-)NCBI
RefSeq Acc Id: XM_038603444   ⟹   XP_038459372
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.069,560,177 - 9,575,555 (-)NCBI
RefSeq Acc Id: XR_005360314
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha611,359,362 - 11,432,292 (-)NCBI
RefSeq Acc Id: XP_038334015   ⟸   XM_038478087
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038334016   ⟸   XM_038478088
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038334013   ⟸   XM_038478085
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038334014   ⟸   XM_038478086
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038459371   ⟸   XM_038603443
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038459372   ⟸   XM_038603444
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038394775   ⟸   XM_038538847
- Peptide Label: isoform X10
- UniProtKB: A0A8P0PEN0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394769   ⟸   XM_038538841
- Peptide Label: isoform X8
- UniProtKB: A0A8P0PEN0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394771   ⟸   XM_038538843
- Peptide Label: isoform X9
- UniProtKB: A0A8P0SJE7 (UniProtKB/TrEMBL),   A0A8P0PEN0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394767   ⟸   XM_038538839
- Peptide Label: isoform X7
- UniProtKB: A0A8P0PEN0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394782   ⟸   XM_038538854
- Peptide Label: isoform X11
- UniProtKB: A0A8I3MP76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394788   ⟸   XM_038538860
- Peptide Label: isoform X12
- UniProtKB: A0A8I3MP76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038394789   ⟸   XM_038538861
- Peptide Label: isoform X13
- UniProtKB: A0A8I3MP76 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000014990 UniProtKB/TrEMBL
  ENSCAFG00030017294 UniProtKB/TrEMBL
  ENSCAFG00030017618 UniProtKB/TrEMBL
  ENSCAFG00040017832 UniProtKB/TrEMBL
  ENSCAFG00845003103 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845025330 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000023623.5 UniProtKB/TrEMBL
  ENSCAFT00000023772.5 UniProtKB/TrEMBL
  ENSCAFT00000061904.2 UniProtKB/TrEMBL
  ENSCAFT00000077891.2 UniProtKB/TrEMBL
  ENSCAFT00000101027.1 UniProtKB/TrEMBL
  ENSCAFT00030032335.1 UniProtKB/TrEMBL
  ENSCAFT00030032608.1 UniProtKB/TrEMBL
  ENSCAFT00040033269.1 UniProtKB/TrEMBL
  ENSCAFT00845005473.1 UniProtKB/TrEMBL
  ENSCAFT00845005503.1 UniProtKB/TrEMBL
  ENSCAFT00845005563.1 UniProtKB/TrEMBL
  ENSCAFT00845005626.1 UniProtKB/TrEMBL
  ENSCAFT00845005662.1 UniProtKB/TrEMBL
  ENSCAFT00845005689.1 UniProtKB/TrEMBL
  ENSCAFT00845044704 ENTREZGENE
  ENSCAFT00845044704.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.630.10 UniProtKB/TrEMBL
InterPro Cyt_P450 UniProtKB/TrEMBL
  Cyt_P450_CS UniProtKB/TrEMBL
  Cyt_P450_E_CYP3A UniProtKB/TrEMBL
  Cyt_P450_E_grp-I UniProtKB/TrEMBL
  Cyt_P450_E_grp-II UniProtKB/TrEMBL
  Cyt_P450_sf UniProtKB/TrEMBL
  Cytochrome_P450_3A UniProtKB/TrEMBL
NCBI Gene LOC489851 ENTREZGENE
PANTHER CYTOCHROME P450 3A4 UniProtKB/TrEMBL
  CYTOCHROME P450 FAMILY 3 UniProtKB/TrEMBL
Pfam p450 UniProtKB/TrEMBL
PRINTS EP450I UniProtKB/TrEMBL
  EP450II UniProtKB/TrEMBL
  EP450IICYP3A UniProtKB/TrEMBL
  P450 UniProtKB/TrEMBL
PROSITE CYTOCHROME_P450 UniProtKB/TrEMBL
Superfamily-SCOP SSF48264 UniProtKB/TrEMBL
UniProt A0A8C0NKJ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0NT82_CANLF UniProtKB/TrEMBL
  A0A8I3MHC9_CANLF UniProtKB/TrEMBL
  A0A8I3MJ92_CANLF UniProtKB/TrEMBL
  A0A8I3MP76 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MUY1_CANLF UniProtKB/TrEMBL
  A0A8I3PU35 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RSN4_CANLF UniProtKB/TrEMBL
  A0A8I3RSP1_CANLF UniProtKB/TrEMBL
  A0A8P0PEN0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SJE7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0T458_CANLF UniProtKB/TrEMBL
UniProt Secondary A0A8P0TJP2 UniProtKB/TrEMBL