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Gene: FOXA3 (forkhead box A3) Canis lupus familiaris

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Symbol:

FOXA3

Name:

forkhead box A3

RGD ID:

12179399

Description:

ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN cellular response to starvation (ortholog); hematopoietic stem cell homeostasis (ortholog); intracellular glucose homeostasis (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); Prostatic Neoplasms (ortholog); FOUND IN actin cytoskeleton (inferred); nucleoplasm (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

hepatocyte nuclear factor 3-gamma

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FOXA3 (forkhead box A3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Foxa3 (forkhead box A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Foxa3 (forkhead box A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Foxa3 (forkhead box A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FOXA3 (forkhead box A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Foxa3 (forkhead box A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FOXA3 (forkhead box A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FOXA3 (forkhead box A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Foxa3 (forkhead box A3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	109,749,142 - 109,757,149 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	109,748,926 - 109,757,006 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	109,234,450 - 109,242,454 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	110,281,914 - 110,289,921 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	110,281,781 - 110,290,035 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	109,957,939 - 109,965,942 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	109,592,626 - 109,600,628 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	110,461,391 - 110,469,396 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Diabetes Mellitus (ISO)

Prostatic Neoplasms (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anatomical structure morphogenesis (IBA)

cell differentiation (IBA)

cellular response to starvation (IEA,ISO)

hematopoietic stem cell homeostasis (IEA,ISO)

intracellular glucose homeostasis (IEA,ISO)

negative regulation of cell population proliferation (ISO)

positive regulation of hepatocyte differentiation (ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of DNA-templated transcription (IEA,ISO)

regulation of transcription by RNA polymerase II (IBA,IEA)

response to nutrient levels (ISO)

spermatogenesis (IEA)

transcription by RNA polymerase II (IEA,ISO)

Cellular Component

actin cytoskeleton (IEA)

nucleoplasm (IEA)

nucleus (IEA)

Molecular Function

DNA binding (IEA,ISO)

DNA-binding transcription factor activity (IEA,ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

protein binding (ISO)

protein domain specific binding (IEA)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

sequence-specific DNA binding (IEA)

sequence-specific double-stranded DNA binding (IEA)

transcription cis-regulatory region binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

forkhead class A signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

FOXA3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	109,749,142 - 109,757,149 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	109,748,926 - 109,757,006 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	109,234,450 - 109,242,454 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	110,281,914 - 110,289,921 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	110,281,781 - 110,290,035 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	109,957,939 - 109,965,942 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	109,592,626 - 109,600,628 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	110,461,391 - 110,469,396 (-)	NCBI		UU_Cfam_GSD_1.0

FOXA3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	45,864,326 - 45,873,797 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	45,863,989 - 45,873,797 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	46,367,584 - 46,377,055 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	51,059,358 - 51,068,895 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	43,172,554 - 43,182,091 (+)	NCBI		Celera
Cytogenetic Map	19	q13.32	NCBI
HuRef	19	42,796,032 - 42,805,584 (+)	NCBI		HuRef
CHM1_1	19	46,369,977 - 46,379,501 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	48,691,764 - 48,701,238 (+)	NCBI		T2T-CHM13v2.0

Foxa3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	18,747,208 - 18,757,464 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	18,747,209 - 18,757,463 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	19,013,283 - 19,023,539 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	19,013,284 - 19,023,538 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	19,598,632 - 19,608,888 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	18,171,805 - 18,182,061 (-)	NCBI		MGSCv36	mm8
Celera	7	16,424,993 - 16,435,230 (-)	NCBI		Celera
Cytogenetic Map	7	A3	NCBI
cM Map	7	9.46	NCBI

Foxa3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	87,790,111 - 87,800,259 (-)	NCBI		GRCr8
mRatBN7.2	1	78,662,067 - 78,672,321 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	78,662,431 - 78,672,155 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	84,051,578 - 84,060,504 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	92,609,178 - 92,618,101 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	85,806,680 - 85,815,606 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	79,921,292 - 79,930,219 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	79,920,752 - 79,930,263 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	81,181,104 - 81,190,030 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	78,368,026 - 78,376,953 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	78,446,136 - 78,455,064 (-)	NCBI
Celera	1	73,128,615 - 73,137,542 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Foxa3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955574	293,344 - 302,002 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955574	293,344 - 301,955 (+)	NCBI	ChiLan1.0	ChiLan1.0

FOXA3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	52,029,299 - 52,039,689 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	53,900,693 - 53,911,081 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	42,873,933 - 42,883,479 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	51,410,294 - 51,419,483 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	51,410,473 - 51,418,744 (+)	Ensembl	panpan1.1		panPan2

Foxa3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	17,849,096 - 17,856,150 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936706	2,196,468 - 2,203,113 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936706	2,196,530 - 2,202,924 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FOXA3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	52,181,114 - 52,188,774 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	52,181,095 - 52,188,777 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	47,444,473 - 47,452,404 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FOXA3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	39,309,439 - 39,320,102 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	39,310,108 - 39,320,095 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	18,951,536 - 18,962,292 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Foxa3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	7,338,478 - 7,350,658 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624832	7,339,612 - 7,350,651 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in FOXA3
49 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
2	5	1	10	9	11	6	2	6	2	16	5	7	10	5

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_022424810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038423443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038467806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038467807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038467808	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038528528	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038528529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038528530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038592807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038592808	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038592809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038656608	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038656609	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038656610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_541549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000007001 ⟹ ENSCAFP00000006480

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	1	109,748,926 - 109,757,006 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00000066170 ⟹ ENSCAFP00000065968

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	1	109,748,926 - 109,756,948 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845008300 ⟹ ENSCAFP00845006530

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	110,281,781 - 110,290,035 (-)	Ensembl

RefSeq Acc Id:

XM_022424810 ⟹ XP_022280518

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	109,749,142 - 109,757,026 (-)	NCBI
Dog10K_Boxer_Tasha	1	109,234,450 - 109,242,379 (-)	NCBI

Sequence:

show sequence

AGGGGGCGCAGGCCCGGGGGATGCTGGGCTCGGTGAAGATGGAGGCCCATGACCTGGCCGAGTG
GAGCTACTACCCGGAGGCGGGCGAGGACCTTGGGAGCCGCAGACCCTTACAGTGACAGGGGACG
AGACAGGACCCACTGACTCACAGCAAAGGTGGCTCCTACTGGAAATATAGCAGCACCTTCCCCG
CTCCCCCCTGCAGTGCTACAAGAGCCCCTCATGGGAAAGGAGCAGGACAGTTGGTGGACTAGGG
GAGAGAGGATGGTGGACAGTGGATGGAAGGGGTCTACTCACCGGTGACCCCAGTGCCCAGCATG
GCCCCCCTTAACTCCTACATGACCCTGAACCCTCTGAGCTCTCCCTACCCCCCCGGGGGGCTCC
CTGCCTCTCCACTGCCCTCAGGACCCCTGGCGCCCCCAGCCCCAGCGGCACCCCTGGGGCCCAC
CTTCCCGGGCCTGGGTGCCAGCAGTGGTGGGGGCAGCAGCTCGGGGTATGGGGGCCCGGGAGCG
GGGCTGGTGCCGGGGAAGGAGATGCCCAAAGGCTACCGGCGGCCACTGGCCCACGCCAAGCCGC
CATATTCCTACATCTCGCTCATCACCATGGCCATCCAGCAGGCGCCGGGCAAGATGCTGACCCT
GAGCGAGATCTACCAGTGGATCATGGACCTCTTCCCCTACTACCGGGAGAACCAGCAACGCTGG
CAGAACTCCATCCGCCACTCTCTGTCTTTCAACGACTGCTTTGTCAAGGTGGCGCGCTCCCCAG
ACAAGCCGGGCAAGGGCTCCTACTGGGCCCTGCACCCCAGCTCAGGTAACATGTTTGAGAATGG
CTGCTACCTGCGCCGCCAGAAGCGCTTCAAGCTGGAAGAGAAGGTGAAGAAAGGGACTGGCGGG
ACCTCCACCTCCAAGAACAGTGCAGGGGCCGCCGCCTCGGCCACCACCCCTGCTGCCCAGGTCA
CCTCTCCCCCGCAACCCCAGCCTCCACCACCTGAGCCGGAGGCCCCCGGCGGGGAAGATGTGGG
GGCTCTGGACTGTGGCTCACCCCCTTCCTCCACACCCTATTTCACTGGCCTGGAGCTCCCGGGG
GAGCTGAAGCTGGATGCACCCTACAACTTCAACCACCCTTTCTCCATCAACAATCTGATGTCAG
AACAGACACCAGCACCTCCTAAACTGGACGTGGGGTTTGGGGGCTATGGGGCAGAGGGTGGGGA
GCCTGGGGTGTACTACCAGGGTGTCTATTCCCGCTCTCTGCTTAACGCATCCTAGCAGGGGTGT
GGGAGCATGGTGGGCGGGGTATGGCTGTAGCTCACACCATCAGGCGCTTGGGGCCTGGTTCATC
CTCCTGGTGACACTTTGCTTGTCCCATCAGTTAACATCTTGGTTGGTCTATTACTGTGGTGACT
GCTGTCTCTGTGAGCATCGTGTCAATCCTTTGGGTACTGTGATAACTGCCGTTGACGTCTTGGT
GTGCCCACTGGGCACTACAAAGACTGCCATGTTGATTGATGTGATTAATCCATCCATTGGGCAC
TCTGATGGCCGCCATCTGGGATGACATCTTAGTAGGCCCTTTGGACATGGCGATGGACATCCTC
TTGATTGACCCTTTGGATGCGATGGTGATATCATTTCAATGACATCTTCTCTGGCCCGTTGGGC
GCTGCAATCACTTCCTTTTTGGTGGACTTCTTGGTGTACCAGACACCAAGTTGGCCACCATCCT
GCATAACATCTCCTTTTGGCACATTGGGTGCTATGATGGCCACCATCTTGGTTGGCTGACATAA
CCAGTATACCGTTGTGCACTGTGACAGCTCCCACAGCCCCTGGGTTGGCCATTGTCATCCCCGT
CTCTTTGGTGTGAGTTGAGTGAGGGATGGAGGTGAGAATACTCCTTGTTTTTTTCTGGAGCCCA
TTCCCCCCTCTGGTCCCGGAGAAACCAGAATGGACTGGCTAGGGTGTGGGGAACTTCTACTGAA
GTCTGGTTCTTGCCTGGGAAGCGGGATACTGGCTGTGTTTGACCATTAAAGGCACTGTTTCTGC
CTCTTGC

hide sequence

RefSeq Acc Id:

XM_038423443 ⟹ XP_038279371

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	1	109,234,450 - 109,242,378 (-)	NCBI

RefSeq Acc Id:

XM_038467806 ⟹ XP_038323734

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	1	109,957,939 - 109,965,942 (-)	NCBI

RefSeq Acc Id:

XM_038467807 ⟹ XP_038323735

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	1	109,957,939 - 109,965,867 (-)	NCBI

RefSeq Acc Id:

XM_038467808 ⟹ XP_038323736

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	1	109,957,939 - 109,965,866 (-)	NCBI

RefSeq Acc Id:

XM_038528528 ⟹ XP_038384456

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	1	110,461,391 - 110,469,396 (-)	NCBI

RefSeq Acc Id:

XM_038528529 ⟹ XP_038384457

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	1	110,461,391 - 110,469,321 (-)	NCBI

RefSeq Acc Id:

XM_038528530 ⟹ XP_038384458

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	1	110,461,391 - 110,469,320 (-)	NCBI

RefSeq Acc Id:

XM_038592807 ⟹ XP_038448735

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	1	109,592,626 - 109,600,628 (-)	NCBI

RefSeq Acc Id:

XM_038592808 ⟹ XP_038448736

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	1	109,592,626 - 109,600,553 (-)	NCBI

RefSeq Acc Id:

XM_038592809 ⟹ XP_038448737

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	1	109,592,626 - 109,600,552 (-)	NCBI

RefSeq Acc Id:

XM_038656608 ⟹ XP_038512536

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	1	110,281,914 - 110,289,921 (-)	NCBI

RefSeq Acc Id:

XM_038656609 ⟹ XP_038512537

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	1	110,281,914 - 110,289,846 (-)	NCBI

RefSeq Acc Id:

XM_038656610 ⟹ XP_038512538

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	1	110,281,914 - 110,289,845 (-)	NCBI

RefSeq Acc Id:

XM_541549 ⟹ XP_541549

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	109,749,142 - 109,757,149 (-)	NCBI
Dog10K_Boxer_Tasha	1	109,234,450 - 109,242,454 (-)	NCBI

Sequence:

show sequence

CCGCGGCGCCCAGGACGGCTGGGACCCCGGGCGGTCGGACGGGCGGGCAGCGGTCGGAACTCGG
GCCGTGCCGGCTGAGAGATCTGAAGCGCTCGGTTCCCCCCGGGCCGGAGCGAGGGCGGGAGGGG
GCGCAGGCCCGGGGGATGCTGGGCTCGGTGAAGATGGAGGCCCATGACCTGGCCGAGTGGAGCT
ACTACCCGGAGGCGGGCGAGGTCTACTCACCGGTGACCCCAGTGCCCAGCATGGCCCCCCTTAA
CTCCTACATGACCCTGAACCCTCTGAGCTCTCCCTACCCCCCCGGGGGGCTCCCTGCCTCTCCA
CTGCCCTCAGGACCCCTGGCGCCCCCAGCCCCAGCGGCACCCCTGGGGCCCACCTTCCCGGGCC
TGGGTGCCAGCAGTGGTGGGGGCAGCAGCTCGGGGTATGGGGGCCCGGGAGCGGGGCTGGTGCC
GGGGAAGGAGATGCCCAAAGGCTACCGGCGGCCACTGGCCCACGCCAAGCCGCCATATTCCTAC
ATCTCGCTCATCACCATGGCCATCCAGCAGGCGCCGGGCAAGATGCTGACCCTGAGCGAGATCT
ACCAGTGGATCATGGACCTCTTCCCCTACTACCGGGAGAACCAGCAACGCTGGCAGAACTCCAT
CCGCCACTCTCTGTCTTTCAACGACTGCTTTGTCAAGGTGGCGCGCTCCCCAGACAAGCCGGGC
AAGGGCTCCTACTGGGCCCTGCACCCCAGCTCAGGTAACATGTTTGAGAATGGCTGCTACCTGC
GCCGCCAGAAGCGCTTCAAGCTGGAAGAGAAGGTGAAGAAAGGGACTGGCGGGACCTCCACCTC
CAAGAACAGTGCAGGGGCCGCCGCCTCGGCCACCACCCCTGCTGCCCAGGTCACCTCTCCCCCG
CAACCCCAGCCTCCACCACCTGAGCCGGAGGCCCCCGGCGGGGAAGATGTGGGGGCTCTGGACT
GTGGCTCACCCCCTTCCTCCACACCCTATTTCACTGGCCTGGAGCTCCCGGGGGAGCTGAAGCT
GGATGCACCCTACAACTTCAACCACCCTTTCTCCATCAACAATCTGATGTCAGAACAGACACCA
GCACCTCCTAAACTGGACGTGGGGTTTGGGGGCTATGGGGCAGAGGGTGGGGAGCCTGGGGTGT
ACTACCAGGGTGTCTATTCCCGCTCTCTGCTTAACGCATCCTAGCAGGGGTGTGGGAGCATGGT
GGGCGGGGTATGGCTGTAGCTCACACCATCAGGCGCTTGGGGCCTGGTTCATCCTCCTGGTGAC
ACTTTGCTTGTCCCATCAGTTAACATCTTGGTTGGTCTATTACTGTGGTGACTGCTGTCTCTGT
GAGCATCGTGTCAATCCTTTGGGTACTGTGATAACTGCCGTTGACGTCTTGGTGTGCCCACTGG
GCACTACAAAGACTGCCATGTTGATTGATGTGATTAATCCATCCATTGGGCACTCTGATGGCCG
CCATCTGGGATGACATCTTAGTAGGCCCTTTGGACATGGCGATGGACATCCTCTTGATTGACCC
TTTGGATGCGATGGTGATATCATTTCAATGACATCTTCTCTGGCCCGTTGGGCGCTGCAATCAC
TTCCTTTTTGGTGGACTTCTTGGTGTACCAGACACCAAGTTGGCCACCATCCTGCATAACATCT
CCTTTTGGCACATTGGGTGCTATGATGGCCACCATCTTGGTTGGCTGACATAACCAGTATACCG
TTGTGCACTGTGACAGCTCCCACAGCCCCTGGGTTGGCCATTGTCATCCCCGTCTCTTTGGTGT
GAGTTGAGTGAGGGATGGAGGTGAGAATACTCCTTGTTTTTTTCTGGAGCCCATTCCCCCCTCT
GGTCCCGGAGAAACCAGAATGGACTGGCTAGGGTGTGGGGAACTTCTACTGAAGTCTGGTTCTT
GCCTGGGAAGCGGGATACTGGCTGTGTTTGACCATTAAAGGCACTGTTTCTGCCTCTTGC

hide sequence

Protein Sequences


Protein RefSeqs	XP_022280518	(Get FASTA)	NCBI Sequence Viewer
	XP_038279371	(Get FASTA)	NCBI Sequence Viewer
	XP_038323734	(Get FASTA)	NCBI Sequence Viewer
	XP_038323735	(Get FASTA)	NCBI Sequence Viewer
	XP_038323736	(Get FASTA)	NCBI Sequence Viewer
	XP_038384456	(Get FASTA)	NCBI Sequence Viewer
	XP_038384457	(Get FASTA)	NCBI Sequence Viewer
	XP_038384458	(Get FASTA)	NCBI Sequence Viewer
	XP_038448735	(Get FASTA)	NCBI Sequence Viewer
	XP_038448736	(Get FASTA)	NCBI Sequence Viewer
	XP_038448737	(Get FASTA)	NCBI Sequence Viewer
	XP_038512536	(Get FASTA)	NCBI Sequence Viewer
	XP_038512537	(Get FASTA)	NCBI Sequence Viewer
	XP_038512538	(Get FASTA)	NCBI Sequence Viewer
	XP_541549	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000006480.2
	ENSCAFP00030007016.1
	ENSCAFP00040012190.1
	ENSCAFP00845006530
	ENSCAFP00845006530.1

RefSeq Acc Id:	XP_541549 ⟸ XM_541549
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0MCB7 (UniProtKB/TrEMBL), A0A8C0QTL7 (UniProtKB/TrEMBL), A0A8I3MX60 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLGSVKMEAHDLAEWSYYPEAGEVYSPVTPVPSMAPLNSYMTLNPLSSPYPPGGLPASPLPSGP LAPPAPAAPLGPTFPGLGASSGGGSSSGYGGPGAGLVPGKEMPKGYRRPLAHAKPPYSYISLIT MAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYW ALHPSSGNMFENGCYLRRQKRFKLEEKVKKGTGGTSTSKNSAGAAASATTPAAQVTSPPQPQPP PPEPEAPGGEDVGALDCGSPPSSTPYFTGLELPGELKLDAPYNFNHPFSINNLMSEQTPAPPKL DVGFGGYGAEGGEPGVYYQGVYSRSLLNAS hide sequence

RefSeq Acc Id:

XP_022280518 ⟸ XM_022424810

- Peptide Label:

isoform X2

- Sequence:

show sequence

MEGVYSPVTPVPSMAPLNSYMTLNPLSSPYPPGGLPASPLPSGPLAPPAPAAPLGPTFPGLGAS
SGGGSSSGYGGPGAGLVPGKEMPKGYRRPLAHAKPPYSYISLITMAIQQAPGKMLTLSEIYQWI
MDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQK
RFKLEEKVKKGTGGTSTSKNSAGAAASATTPAAQVTSPPQPQPPPPEPEAPGGEDVGALDCGSP
PSSTPYFTGLELPGELKLDAPYNFNHPFSINNLMSEQTPAPPKLDVGFGGYGAEGGEPGVYYQG
VYSRSLLNAS

hide sequence

Ensembl Acc Id:

ENSCAFP00000006480 ⟸ ENSCAFT00000007001

Ensembl Acc Id:

ENSCAFP00000065968 ⟸ ENSCAFT00000066170

RefSeq Acc Id:	XP_038323734 ⟸ XM_038467806
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038323735 ⟸ XM_038467807
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038323736 ⟸ XM_038467808
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038448735 ⟸ XM_038592807
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038448736 ⟸ XM_038592808
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038448737 ⟸ XM_038592809
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038512536 ⟸ XM_038656608
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0MCB7 (UniProtKB/TrEMBL), A0A8C0QTL7 (UniProtKB/TrEMBL), A0A8I3MX60 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038512537 ⟸ XM_038656609
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038512538 ⟸ XM_038656610
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038279371 ⟸ XM_038423443
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038384456 ⟸ XM_038528528
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0MCB7 (UniProtKB/TrEMBL), A0A8C0QTL7 (UniProtKB/TrEMBL), A0A8I3MX60 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038384457 ⟸ XM_038528529
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038384458 ⟸ XM_038528530
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSCAFP00845006530 ⟸ ENSCAFT00845008300

Protein Domains

Fork-head

Promoters

RGD ID:

13682234

Promoter ID:

EPDNEW_C302

Type:

single initiation site

Name:

FOXA3_1

Description:

forkhead box A3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	109,757,137 - 109,757,197	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000004363	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030004346	UniProtKB/TrEMBL
	ENSCAFG00040007565	UniProtKB/TrEMBL
	ENSCAFG00845004638	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000007001.4	UniProtKB/TrEMBL
	ENSCAFT00030007990.1	UniProtKB/TrEMBL
	ENSCAFT00040014087.1	UniProtKB/TrEMBL
	ENSCAFT00845008300	ENTREZGENE
	ENSCAFT00845008300.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
InterPro	FH_FOXA3	UniProtKB/TrEMBL
	Fork-head_N	UniProtKB/TrEMBL
	Fork_head_dom	UniProtKB/TrEMBL
	FOX_domain-containing	UniProtKB/TrEMBL
	TF_fork_head_CS_1	UniProtKB/TrEMBL
	TF_fork_head_CS_2	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
NCBI Gene	FOXA3	ENTREZGENE
PANTHER	FORKHEAD BOX PROTEIN	UniProtKB/TrEMBL
	HEPATOCYTE NUCLEAR FACTOR 3-GAMMA	UniProtKB/TrEMBL
Pfam	Forkhead	UniProtKB/TrEMBL
	Forkhead_N	UniProtKB/TrEMBL
PRINTS	FORKHEAD	UniProtKB/TrEMBL
PROSITE	FORK_HEAD_1	UniProtKB/TrEMBL
	FORK_HEAD_2	UniProtKB/TrEMBL
	FORK_HEAD_3	UniProtKB/TrEMBL
SMART	SM00339	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
UniProt	A0A8C0MCB7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0QTL7	ENTREZGENE
	A0A8I3MX60	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:40945	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)

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Imported Disease Annotations - CTD

Imported Annotations - PID (archival)