AZGP1 (alpha-2-glycoprotein 1, zinc-binding) - Rat Genome Database

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Gene: AZGP1 (alpha-2-glycoprotein 1, zinc-binding) Canis lupus familiaris
Analyze
Symbol: AZGP1
Name: alpha-2-glycoprotein 1, zinc-binding
RGD ID: 12177110
Description: INVOLVED IN cell adhesion (ortholog); cellular response to insulin stimulus (ortholog); cellular response to magnesium ion (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); adenocarcinoma (ortholog); Cachexia (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: zinc-alpha-2-glycoprotein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.169,622,991 - 9,629,154 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl69,622,992 - 9,629,154 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha611,261,385 - 11,267,549 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.069,560,452 - 9,566,604 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl69,560,452 - 9,566,605 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.169,409,423 - 9,415,561 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.069,389,742 - 9,395,878 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.069,568,881 - 9,575,021 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
AZGP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.169,622,991 - 9,629,154 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl69,622,992 - 9,629,154 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha611,261,385 - 11,267,549 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.069,560,452 - 9,566,604 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl69,560,452 - 9,566,605 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.169,409,423 - 9,415,561 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.069,389,742 - 9,395,878 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.069,568,881 - 9,575,021 (-)NCBIUU_Cfam_GSD_1.0
AZGP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38799,966,730 - 99,976,031 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl799,966,720 - 99,976,042 (-)EnsemblGRCh38hg38GRCh38
GRCh37799,564,353 - 99,573,654 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36799,402,286 - 99,411,623 (-)NCBINCBI36Build 36hg18NCBI36
Build 34799,209,002 - 99,218,338NCBI
Celera794,298,908 - 94,308,290 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef794,200,047 - 94,209,434 (-)NCBIHuRef
CHM1_1799,494,515 - 99,503,901 (-)NCBICHM1_1
T2T-CHM13v2.07101,206,237 - 101,220,128 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2798,924,486 - 98,933,868 (-)NCBI
Azgp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395137,979,783 - 137,988,495 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5137,979,782 - 137,988,495 (+)EnsemblGRCm39 Ensembl
GRCm385137,981,521 - 137,990,233 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5137,981,520 - 137,990,233 (+)EnsemblGRCm38mm10GRCm38
MGSCv375138,422,749 - 138,431,461 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365138,211,348 - 138,220,018 (+)NCBIMGSCv36mm8
Celera5134,967,149 - 134,978,633 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map576.92NCBI
Azgp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81222,044,685 - 22,051,248 (+)NCBIGRCr8
mRatBN7.21216,930,990 - 16,939,333 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1216,931,024 - 16,939,091 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1217,761,589 - 17,767,981 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,385,332 - 18,391,726 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01217,438,735 - 17,445,127 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01219,196,565 - 19,203,094 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1219,196,611 - 19,202,647 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01221,255,645 - 21,262,122 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41217,492,913 - 17,498,949 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11217,482,434 - 17,488,471 (+)NCBI
Celera1218,867,978 - 18,873,945 (+)NCBICelera
RH 3.4 Map12256.8RGD
Cytogenetic Map12q11NCBI
Azgp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955573899,798 - 912,272 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955573902,153 - 910,481 (-)NCBIChiLan1.0ChiLan1.0
LOC100980965
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26117,883,884 - 117,897,021 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17166,148,518 - 166,161,655 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0791,999,717 - 92,009,066 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17105,432,782 - 105,442,219 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7105,432,782 - 105,442,219 (-)Ensemblpanpan1.1panPan2
Azgp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344133,922,347 - 133,930,595 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936543105,956 - 114,190 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936543105,983 - 113,475 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AZGP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.137,867,521 - 7,874,857 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.237,121,544 - 7,129,596 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AZGP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12813,104,262 - 13,120,329 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2813,104,323 - 13,120,363 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660703,149,715 - 3,159,344 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Azgp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474017,054,221 - 17,063,226 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474017,054,221 - 17,062,420 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in AZGP1
58 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 32 21 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000023638   ⟹   ENSCAFP00000021945
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl69,622,992 - 9,629,154 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845005162   ⟹   ENSCAFP00845004100
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl69,560,452 - 9,566,605 (-)Ensembl
RefSeq Acc Id: NM_001287145   ⟹   NP_001274074
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.169,622,991 - 9,629,154 (-)NCBI
Dog10K_Boxer_Tasha611,261,385 - 11,267,549 (-)NCBI
ROS_Cfam_1.069,560,452 - 9,566,604 (-)NCBI
UMICH_Zoey_3.169,409,423 - 9,415,561 (-)NCBI
UNSW_CanFamBas_1.069,389,742 - 9,395,878 (-)NCBI
UU_Cfam_GSD_1.069,568,881 - 9,575,021 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001274074 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAJ17548 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000021945.3
  ENSCAFP00030028733.1
  ENSCAFP00040028302.1
  ENSCAFP00845004100
  ENSCAFP00845004100.1
RefSeq Acc Id: NP_001274074   ⟸   NM_001287145
- Peptide Label: precursor
- UniProtKB: A0A8C0Z0R3 (UniProtKB/TrEMBL),   A0A8C0R0T0 (UniProtKB/TrEMBL),   A0A8I3RR08 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000021945   ⟸   ENSCAFT00000023638
Ensembl Acc Id: ENSCAFP00845004100   ⟸   ENSCAFT00845005162
Promoters
RGD ID:13683545
Promoter ID:EPDNEW_C1614
Type:initiation region
Name:AZGP1_1
Description:alpha-2-glycoprotein 1, zinc-binding
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.169,629,170 - 9,629,230EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000014889 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030017861 UniProtKB/TrEMBL
  ENSCAFG00040017585 UniProtKB/TrEMBL
  ENSCAFG00845002917 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000023638.5 UniProtKB/TrEMBL
  ENSCAFT00030032936.1 UniProtKB/TrEMBL
  ENSCAFT00040032528.1 UniProtKB/TrEMBL
  ENSCAFT00845005162 ENTREZGENE
  ENSCAFT00845005162.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.30.500.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC_class-I_related UniProtKB/TrEMBL
  MHC_I-like_Ag-recog UniProtKB/TrEMBL
  MHC_I-like_Ag-recog_sf UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  MHC_I_a_a1/a2 UniProtKB/TrEMBL
KEGG Report cfa:479739 UniProtKB/TrEMBL
NCBI Gene AZGP1 ENTREZGENE
PANTHER MHC CLASS I-RELATED UniProtKB/TrEMBL
  ZINC-ALPHA-2-GLYCOPROTEIN UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  MHC_I UniProtKB/TrEMBL
PRINTS MHCCLASSI UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF54452 UniProtKB/TrEMBL
UniProt A0A8C0R0T0 ENTREZGENE
  A0A8C0Z0R3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RR08 ENTREZGENE, UniProtKB/TrEMBL
  Q4GX49_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:38327 ENTREZGENE