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Gene: SNX9 (sorting nexin 9) Canis lupus familiaris

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Symbol:

SNX9

Name:

sorting nexin 9

RGD ID:

12175006

Description:

ENCODES a protein that exhibits 1-phosphatidylinositol binding (inferred); Arp2/3 complex binding (inferred); identical protein binding (inferred); INVOLVED IN positive regulation of GTPase activity (ortholog); positive regulation of protein kinase activity (ortholog); regulation of synaptic vesicle endocytosis (ortholog); ASSOCIATED WITH blepharophimosis (ortholog); chromosome 6q24-q25 deletion syndrome (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN presynapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

sorting nexin-9

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SNX9 (sorting nexin 9)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL
Mus musculus (house mouse):	Snx9 (sorting nexin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Snx9 (sorting nexin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Snx9 (sorting nexin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SNX9 (sorting nexin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Snx9 (sorting nexin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SNX9 (sorting nexin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SNX9 (sorting nexin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Snx9 (sorting nexin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	47,346,214 - 47,457,417 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	47,343,668 - 47,455,937 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	48,191,531 - 48,302,806 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	47,532,216 - 47,644,795 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	47,530,968 - 47,644,779 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	47,412,288 - 47,523,565 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	47,282,028 - 47,393,272 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	47,840,744 - 47,952,026 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SNX9	Dog	Experimental Mammary Neoplasms		ISO	Snx9 (Rattus norvegicus)	9068941	mRNA more ...	RGD	PMID:27766425 and REF_RGD_ID:151665131

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SNX9	Dog	blepharophimosis		ISO	SNX9 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Blepharophimosis	ClinVar	PMID:24674232
SNX9	Dog	chromosome 6q24-q25 deletion syndrome		ISO	SNX9 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Chromosome 6q24-q25 deletion syndrome	ClinVar	PMID:25741868 and PMID:38177409

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SNX9	Dog	cleavage furrow formation	involved_in	IBA	PANTHER:PTN000058730 more ...	150520179		GO_Central	GO_REF:0000033
SNX9	Dog	cleavage furrow formation	involved_in	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	endocytosis	involved_in	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	endocytosis	involved_in	IBA	PANTHER:PTN005253497 more ...	150520179		GO_Central	GO_REF:0000033
SNX9	Dog	endocytosis	involved_in	IEA	InterPro:IPR037425 and InterPro:IPR037426	150520179		InterPro	GO_REF:0000002
SNX9	Dog	endosomal transport	involved_in	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	endosomal transport	involved_in	IBA	PANTHER:PTN005253497 more ...	150520179		GO_Central	GO_REF:0000033
SNX9	Dog	intracellular protein transport	acts_upstream_of_or_within	IEA	UniProtKB:Q91VH2 and ensembl:ENSMUSP00000002436	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	intracellular protein transport	involved_in	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	intracellular protein transport	involved_in	IEA	InterPro:IPR037425 and InterPro:IPR037426	150520179		InterPro	GO_REF:0000002
SNX9	Dog	lipid tube assembly	involved_in	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	mitotic cell cycle	involved_in	IEA	InterPro:IPR014536	150520179		InterPro	GO_REF:0000002
SNX9	Dog	mitotic cytokinesis	involved_in	IEA	InterPro:IPR037425 and InterPro:IPR037426	150520179		InterPro	GO_REF:0000002
SNX9	Dog	mitotic cytokinesis	involved_in	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	plasma membrane tubulation	involved_in	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	plasma membrane tubulation	involved_in	IBA	PANTHER:PTN005253497 more ...	150520179		GO_Central	GO_REF:0000033
SNX9	Dog	positive regulation of actin filament polymerization	involved_in	IEA	UniProtKB:Q91VH2 and ensembl:ENSMUSP00000002436	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	positive regulation of GTPase activity	involved_in	ISO	SNX9 (Homo sapiens)	9068941	PMID:15703209	UniProt	PMID:15703209
SNX9	Dog	positive regulation of membrane protein ectodomain proteolysis	involved_in	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	positive regulation of protein kinase activity	involved_in	ISO	SNX9 (Homo sapiens)	9068941	PMID:18388313	UniProt	PMID:18388313
SNX9	Dog	protein transport	involved_in	IEA	UniProtKB-KW:KW-0653	150520179		UniProt	GO_REF:0000043
SNX9	Dog	protein transport	involved_in	IEA	InterPro:IPR014536	150520179		InterPro	GO_REF:0000002
SNX9	Dog	protein-containing complex assembly	involved_in	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	receptor-mediated endocytosis	involved_in	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	regulation of synaptic vesicle endocytosis	involved_in	ISO	Snx9 (Rattus norvegicus)	9068941	PMID:17681954	SynGO	PMID:17681954 and REF_RGD_ID:155230781

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SNX9	Dog	clathrin-coated pit	located_in	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	clathrin-coated vesicle	located_in	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	cuticular plate	located_in	IEA	UniProtKB:Q91VH2 and ensembl:ENSMUSP00000002436	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	cytoplasm	located_in	IEA	UniProtKB:Q91VH2 more ...	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	cytoplasmic vesicle	located_in	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	cytoplasmic vesicle	is_active_in	IBA	FB:FBgn0040475 more ...	150520179		GO_Central	GO_REF:0000033
SNX9	Dog	cytoplasmic vesicle	located_in	IEA	UniProtKB-KW:KW-0968	150520179		UniProt	GO_REF:0000043
SNX9	Dog	cytoplasmic vesicle membrane	located_in	IEA	UniProtKB-SubCell:SL-0089	150520179		UniProt	GO_REF:0000044
SNX9	Dog	cytoplasmic vesicle membrane	located_in	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	cytosol	located_in	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	cytosol	is_active_in	IEA	UniProtKB:Q91VH2 and ensembl:ENSMUSP00000002436	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	membrane	located_in	IEA	UniProtKB-KW:KW-0472	150520179		UniProt	GO_REF:0000043
SNX9	Dog	plasma membrane	located_in	IEA	UniProtKB:Q91VH2 more ...	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	plasma membrane	is_active_in	IBA	FB:FBgn0040475 more ...	150520179		GO_Central	GO_REF:0000033
SNX9	Dog	presynapse	is_active_in	ISO	Snx9 (Rattus norvegicus)	9068941	PMID:17681954	SynGO	PMID:17681954 and REF_RGD_ID:155230781
SNX9	Dog	trans-Golgi network	located_in	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
SNX9	Dog	1-phosphatidylinositol binding	enables	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	Arp2/3 complex binding	enables	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	identical protein binding	enables	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	phosphatidylinositol binding	enables	IEA	InterPro:IPR001683 more ...	150520179		InterPro	GO_REF:0000002
SNX9	Dog	phosphatidylinositol binding	enables	IBA	MGI:1913866 more ...	150520179		GO_Central	GO_REF:0000033
SNX9	Dog	phosphatidylinositol binding	enables	IEA	UniProtKB:Q91VH2 more ...	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	protein binding	enables	ISO	UniProtKB:Q17R13	9068941	PMID:11799118	IntAct	PMID:11799118
SNX9	Dog	protein binding	enables	ISO	PR:P15208 and PR:Q60751	9068941	PMID:12917015	MGI	PMID:12917015
SNX9	Dog	protein binding	enables	ISO	UniProtKB:Q07889 and UniProtKB:Q07890	9068941	PMID:14679214	IntAct	PMID:14679214
SNX9	Dog	protein binding	enables	ISO	UniProtKB:O00401 more ...	9068941	PMID:18388313	IntAct	PMID:18388313
SNX9	Dog	protein binding	enables	ISO	UniProtKB:P42768	9068941	PMID:17242350	IntAct	PMID:17242350
SNX9	Dog	protein binding	enables	ISO	UniProtKB:Q8WV41	9068941	PMID:23085988	IntAct	PMID:23085988
SNX9	Dog	protein binding	enables	ISO	UniProtKB:P42768 and UniProtKB:Q8WV41	9068941	PMID:19487689	IntAct	PMID:19487689
SNX9	Dog	protein binding	enables	ISO	UniProtKB:O88839 more ...	9068941	PMID:10531379	BHF-UCL	PMID:10531379
SNX9	Dog	protein binding	enables	ISO	UniProtKB:P0CG48 and UniProtKB:Q96J02	9068941	PMID:20491914	IntAct	PMID:20491914
SNX9	Dog	protein binding	enables	ISO	UniProtKB:Q13444	9068941	PMID:10531379 more ...	IntAct	PMID:10531379 more ...
SNX9	Dog	protein binding	enables	ISO	UniProtKB:Q05193	9068941	PMID:18353773	IntAct	PMID:18353773
SNX9	Dog	protein binding	enables	ISO	UniProtKB:Q96RF0	9068941	PMID:20427313	UniProt	PMID:20427313
SNX9	Dog	protein binding	enables	ISO	UniProtKB:P48023	9068941	PMID:19807924	IntAct	PMID:19807924
SNX9	Dog	protein binding	enables	ISO	UniProtKB:P50570 and UniProtKB:Q05193	9068941	PMID:15703209 and PMID:33961781	IntAct	PMID:15703209 and PMID:33961781
SNX9	Dog	protein binding	enables	ISO	UniProtKB:P50570	9068941	PMID:27107012 and PMID:35271311	IntAct	PMID:27107012 and PMID:35271311
SNX9	Dog	protein binding	enables	ISO	UniProtKB:Q98143	9068941	PMID:25544563	IntAct	PMID:25544563
SNX9	Dog	protein binding	enables	ISO	UniProtKB:Q01968	9068941	PMID:25107275	IntAct	PMID:25107275
SNX9	Dog	protein binding	enables	ISO	UniProtKB:B7UM88	9068941	PMID:16585770	IntAct	PMID:16585770
SNX9	Dog	protein binding	enables	ISO	UniProtKB:P00883	9068941	PMID:20129922	UniProt	PMID:20129922
SNX9	Dog	protein binding	enables	ISO	uniprotkb:Q6PFY1	9068941	PMID:34168078	MGI	PMID:34168078
SNX9	Dog	protein homodimerization activity	enables	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107
SNX9	Dog	ubiquitin protein ligase binding	enables	IEA	UniProtKB:Q9Y5X1 and ensembl:ENSP00000376024	150520179		Ensembl	GO_REF:0000107

PMID:22301074	PMID:30032202

SNX9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	47,346,214 - 47,457,417 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	47,343,668 - 47,455,937 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	48,191,531 - 48,302,806 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	47,532,216 - 47,644,795 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	47,530,968 - 47,644,779 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	47,412,288 - 47,523,565 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	47,282,028 - 47,393,272 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	47,840,744 - 47,952,026 (+)	NCBI		UU_Cfam_GSD_1.0

SNX9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	157,823,246 - 157,945,077 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	157,700,387 - 157,945,077 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	158,244,278 - 158,366,109 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	158,164,282 - 158,286,097 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	158,214,702 - 158,336,518	NCBI
Celera	6	158,893,214 - 159,014,998 (+)	NCBI		Celera
Cytogenetic Map	6	q25.3	NCBI
HuRef	6	155,760,951 - 155,838,449 (+)	NCBI		HuRef
CHM1_1	6	158,506,443 - 158,628,331 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	159,069,178 - 159,191,298 (+)	NCBI		T2T-CHM13v2.0

Snx9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	5,891,599 - 5,982,231 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	5,891,604 - 5,982,229 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	5,841,324 - 5,931,956 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	5,841,329 - 5,931,954 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	5,841,380 - 5,930,711 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	5,797,862 - 5,887,193 (+)	NCBI		MGSCv36	mm8
Celera	17	6,430,109 - 6,474,633 (+)	NCBI		Celera
Cytogenetic Map	17	A1	NCBI
cM Map	17	3.51	NCBI

Snx9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	48,827,061 - 48,915,215 (+)	NCBI		GRCr8
mRatBN7.2	1	46,424,897 - 46,510,096 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	46,423,553 - 46,509,036 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	46,975,856 - 47,059,358 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	52,963,109 - 53,046,607 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	47,051,280 - 47,134,782 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	46,780,142 - 46,826,250 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	46,779,860 - 46,825,830 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	48,084,891 - 48,130,894 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	1	42,155,821 - 42,201,820 (+)	NCBI		Celera
Cytogenetic Map	1	q11	NCBI

Snx9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955439	4,421,297 - 4,503,393 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955439	4,422,385 - 4,503,408 (-)	NCBI	ChiLan1.0	ChiLan1.0

SNX9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	177,840,146 - 178,058,536 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	175,841,464 - 175,961,940 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	155,724,026 - 155,844,553 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	157,826,651 - 157,903,363 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	157,824,918 - 157,903,357 (+)	Ensembl	panpan1.1		panPan2

Snx9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	142,484,264 - 142,552,848 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936489	9,736,242 - 9,804,874 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936489	9,736,255 - 9,804,841 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNX9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	9,130,338 - 9,239,029 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	9,130,360 - 9,239,023 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	11,253,605 - 11,362,628 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SNX9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	85,468,837 - 85,549,351 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	85,468,479 - 85,549,988 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	57,787,751 - 57,911,509 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Snx9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624785	282,512 - 374,378 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624785	283,886 - 374,740 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in SNX9
1165 total Variants

Assembly: CanFam3.1

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
1	47433704	47433705	G	A	snv	Leonberger (LB1919), Leonberger (LB111)	View more Information

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10


RefSeq Transcripts	XM_005615539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005615541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038465760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038465761	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038526429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038526430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038590725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038590726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038654518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038654519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000000969 ⟹ ENSCAFP00000000887

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	1	47,343,668 - 47,455,937 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000046534 ⟹ ENSCAFP00000042947

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	1	47,393,757 - 47,455,937 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000073772 ⟹ ENSCAFP00000058817

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	1	47,345,310 - 47,455,937 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000074988 ⟹ ENSCAFP00000060093

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	1	47,345,310 - 47,455,937 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000084156 ⟹ ENSCAFP00000054197

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	1	47,345,310 - 47,455,937 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000089201 ⟹ ENSCAFP00000062280

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	1	47,345,310 - 47,455,937 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000090485 ⟹ ENSCAFP00000061124

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	1	47,345,310 - 47,455,937 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845001468 ⟹ ENSCAFP00845001149

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	47,530,968 - 47,644,779 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845001493 ⟹ ENSCAFP00845001171

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	47,530,968 - 47,644,779 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845001537 ⟹ ENSCAFP00845001209

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	47,531,511 - 47,644,779 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845001578 ⟹ ENSCAFP00845001248

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	47,581,116 - 47,644,779 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845001614 ⟹ ENSCAFP00845001278

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	47,581,116 - 47,644,779 (+)	Ensembl

RefSeq Acc Id:

XM_005615539 ⟹ XP_005615596

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	47,374,752 - 47,457,417 (+)	NCBI
Dog10K_Boxer_Tasha	1	48,220,124 - 48,302,806 (+)	NCBI

Sequence:

show sequence

TTCGCATTAATGACTTCATTTATCACTTGTGTCACAAGGCACATGCTGTTATCCTTATCTTATTCTGGAGGAATTTGAGACAGTCTTGAAGGAATTTGGCCAAGTTTAGAAAGCTGTTGAAATGGCTC
GGGTTATGTATGACTTTGCTGCTGAGCCTGGAAATAATGAACTGACGGTTAATGAAGGAGAAATCATCACAATTACAAATCCGGATGTTGGTGGAGGATGGCTGGAAGGAAGAAACAGCAAAGGAGAA
CGCGGACTTGTTCCCACAGACTATGTTGAAATTTTGCCCAATGATGGAAAAGACCCATTTTCTTGTGGAAATTCAGTGGCTGACCAAGCCTTCCTTGATTCTCTGTCAGCAAGTACAGCTCAAGCCAA
TTCGTCAGCTGCCAACAGTAACAACCAGGTGGATATTTTGGCTCAGATTGGTTGTATTGAAAGTCTCAGCCAGTCACCACCTTCTTCACCTTCTCCTTCTCCCACCATAAATAAGGTCAGCAGCAGCA
ATGACCCCTGGTCAGCCTGGAATGCTTCCACATCTGGAAACTGGGACAGCACTGATGGGTGGGGAGCCAAGCCAGAGGGGGCCGCAGCGCAAAGAAACACCTCCAATAACTGGGACACCGCCTTTGGT
CACCCCCAGGCCTACCAAGGACCAGCAACTGGTGATGACGACGAGTGGGACGAAGACTGGGACGACCCCAAGTCGGCTGCTCCTTACTTCAAGGATTCAGAGTCAGCAGAAGCAGGGGGTGCTCAGCG
GGGCAACAGCCGTGCCGGCTCCTCCTCCATGAAGCTGCCGCTCAACAAGTTTCCTGGATTTGCAAAACCTGGAATGGAACAGTATTTGTTGGCCAAGCAACTAGCAAAACCCAAAGAGAAAATTCCTA
TCATTGTTGGAGATTATGGCCCAATGTGGGTTTATCCTACCTCTACATTTGACTGTGTGGTAGCAGATCCCAGGAAAGGCTCCAAAATGTACGGTCTGAAGAGCTACATTGAATATCAGTTAACACCT
ACGAACACTAATCGATCCGTAAACCACAGGTATAAGCACTTTGACTGGTTATATGAACGTCTCCTGGTTAAGTTTGGGTCAGCCATTCCAATCCCTTCTCTTCCAGATAAGCAAGTCACAGGTCGCTT
TGAAGAAGAATTTATCAAAATGCGCATGGAGAGACTCCAGGCGTGGATGACCAGGATGTGTCGTCACCCAGTAATCTCAGAAAGTGAGCTTTTCCAGCAATTTCTAAATTTCCGAGATGAAAAGGAAT
GGAAAAGTGGGAAGAGAAAGGCCGAGAAAGATGAGCTGGTGGGAGTTATGATATTTTCCACCATGGAACCAGAAGCACCTGACTTGGACCTACTAGAAATAGAACAGAAGTGCGAAGCTGTTGGTAAA
TTCACCAAAGCCATGGACGACGGCGTGAAGGAGCTGCTGACCGTGGGGCAGGAGCACTGGAAGCGGTGCACAGGGCCATTACCCAAGGAATATCAGAAGATAGGAAAAGCCTTGCAGAGTTTAGCAAC
AGTGTTTAGTTCCAGTGGTTATCAAGGCGAAACGGATCTCAACGCTGCCATCACCGAAGCAGGAAAGACTTACGAAGAAATTGCTGGTCTTGTGGCAGAGCAGCCAAAGAAAGATCTTCATTTCCTCA
TGGAATGTAATCATGAATATAAAGGCTTCCTTGGCTGCTTCCCTGATATTATCGGCGCCCACAAGGGAGCAATAGAAAAAGTGAAAGAAAGTGATAAACTGGTTGCAACTAGTAAAATCACCCCCCAG
GACAAACAGAACATGGTGAAGCGGGTTGGCACTATGTCTTATGCGTTGCAAGCTGAGATGAATCACTTCCATAGCAACCGGATCTATGACTACAACAGTGTCATCCGCCTGTACCTGGAGCAACAAGT
GCAGTTCTATGAAACAATTGCAGAAAAGCTGAGGCAGGCCCTCGGCCGCTTCCCAGTCATGTAGACCAGAACAGAAAATGACGAGAACTCCGAAGTGCTTCTTTCTGACTTTGGGCAATGCAATTTAA
TCTTTTTCCCCCTCTTCTGCAAAAACAAAAAGGAAAGAACGAACGAAAACCAAAAAAGAAACAGAGTTGCAAAAAACTGCATCTATTTTATTAACAAACCTAAATGAACACATCGGTTACTTAGGGAC
AGTTGTCTCTGGTTCATTTCCACATCCCTTATTTAAAACAATGGAAATTGTCTCTATTTTTGGAAAGTACTTAAAGTTATCAGAATTTTGAATGGAAAATTAGGGGTTTCCCCCACTGGTATTTTACA
TAAAATTGTGATTTTTACATCATCCGTGATCTTCTGGTTCTTACCCAATGTCAGATGATTACTAATTGCTTTCTTAAAAATATGAAATATGCCGGGATAAAAAATATATATGTTTGTATATTTTTATA
ACTCTTTTCAGTCCTGTGGGACACCTGTCTACTTAGGAAAATCTACATGCCTTTCACGGACATACTTATGACTCCAGTGCTTACGTTTCCAGGAGAGAGGAAACCAAGAGAGGGGCTCCTGGGGCCGC
TCCTCACCAGCAGCGGCTCACAGTCACTGTCCCCCTTCCCCCAGGAACATTGCTGAGCGTCCCCTTCTGTGCAGAGGGCTTGCTCCTTGGCACCCCCTTCCCGGGCTTAGTTCTGGCCAGAAGGAATA
TACTGGAGAAGTAGGGCTCTGACTCTGCTCCCAGGGCTGGGCTGACCCTGGTGCTCTGGAAGGAGTGGTCCCCGGGACAAATGTGCTCCCCGCAGCTCTCACCTCGAAGGGGAGTCTCAGTCTATCCA
GTCAGACGTGATGAGAAATGGGTGTGAGAGCGTAATTTGCCCCTCGCTTCAGAAGGGAGACCAGCGGGCCAGGGCTATTATCTGAAAAGATGAAAAACCCAGCTCAGTAGACCTCTCCGTCCCACCAA
ATGGAAAAGTTTAGGGACTGATATAAGGGTGACAACCTGAATAATGCACAGTGATCCCTAGAGCTTTTATGTTCAAGAAGTACGGAGTGATGTTCCTCGTGACTGCACCCTAAACGTCAGAGTTGTCC
TGACCACTAGGACTCCAGTAAATGGCAAAAAGCCAGACACCATCTTCACAGACTGTCCGCTTTCCATCTGAACACGCGCTATCTTGCCTGCTGGCGAGCGTGTCCGTCCACAGTTGCCTTACGACAGT
ACCCACTGCTTTCATTTTCCTGACCTACCAATTATAGTATAGAAAATGGAAAGTTTGGGCCCACACAATGAAACCAAAAAATAAGTAGAAGAGGAAATCAGACGAACATGAATATGAGAATTTCTTGT
TCTTTAATATCACGGGTTTTGTTGACGTTTTATAAGTAATTTTCCCTACTTGATTTTTCTTTTATAAAATCTCATAGAACAATGTTTATGATACAGCCATTTAATATATGTACAAATTGTAAAGAATA
TGTATAAATGTTTTACACAAATGTAAGAGCATGTAGAAGCCAACATATAAATAAATTGTTAAAAAACTGTACAGTAAATTCTGAAAGCACTTTTTCAAAACA

hide sequence

RefSeq Acc Id:

XM_005615541 ⟹ XP_005615598

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	47,346,214 - 47,457,417 (+)	NCBI
Dog10K_Boxer_Tasha	1	48,191,531 - 48,302,806 (+)	NCBI

Sequence:

show sequence

TTATTATTTTTAGAAATGGAGCTCTCCCTCCAGGGAACCTGTTGTCTGCTGTTAACTGAAGCTCGGGTTATGTATGACTTTGCTGCTGAGCCTGGAAATAATGAACTGACGGTTAATGAAGGAGAAAT
CATCACAATTACAAATCCGGATGTTGGTGGAGGATGGCTGGAAGGAAGAAACAGCAAAGGAGAACGCGGACTTGTTCCCACAGACTATGTTGAAATTTTGCCCAATGATGGAAAAGACCCATTTTCTT
GTGGAAATTCAGTGGCTGACCAAGCCTTCCTTGATTCTCTGTCAGCAAGTACAGCTCAAGCCAATTCGTCAGCTGCCAACAGTAACAACCAGGTCAGCAGCAGCAATGACCCCTGGTCAGCCTGGAAT
GCTTCCACATCTGGAAACTGGGACAGCACTGATGGGTGGGGAGCCAAGCCAGAGGGGGCCGCAGCGCAAAGAAACACCTCCAATAACTGGGACACCGCCTTTGGTCACCCCCAGGCCTACCAAGGACC
AGCAACTGGTGATGACGACGAGTGGGACGAAGACTGGGACGACCCCAAGTCGGCTGCTCCTTACTTCAAGGATTCAGAGTCAGCAGAAGCAGGGGGTGCTCAGCGGGGCAACAGCCGTGCCGGCTCCT
CCTCCATGAAGCTGCCGCTCAACAAGTTTCCTGGATTTGCAAAACCTGGAATGGAACAGTATTTGTTGGCCAAGCAACTAGCAAAACCCAAAGAGAAAATTCCTATCATTGTTGGAGATTATGGCCCA
ATGTGGGTTTATCCTACCTCTACATTTGACTGTGTGGTAGCAGATCCCAGGAAAGGCTCCAAAATGTACGGTCTGAAGAGCTACATTGAATATCAGTTAACACCTACGAACACTAATCGATCCGTAAA
CCACAGGTATAAGCACTTTGACTGGTTATATGAACGTCTCCTGGTTAAGTTTGGGTCAGCCATTCCAATCCCTTCTCTTCCAGATAAGCAAGTCACAGGTCGCTTTGAAGAAGAATTTATCAAAATGC
GCATGGAGAGACTCCAGGCGTGGATGACCAGGATGTGTCGTCACCCAGTAATCTCAGAAAGTGAGCTTTTCCAGCAATTTCTAAATTTCCGAGATGAAAAGGAATGGAAAAGTGGGAAGAGAAAGGCC
GAGAAAGATGAGCTGGTGGGAGTTATGATATTTTCCACCATGGAACCAGAAGCACCTGACTTGGACCTACTAGAAATAGAACAGAAGTGCGAAGCTGTTGGTAAATTCACCAAAGCCATGGACGACGG
CGTGAAGGAGCTGCTGACCGTGGGGCAGGAGCACTGGAAGCGGTGCACAGGGCCATTACCCAAGGAATATCAGAAGATAGGAAAAGCCTTGCAGAGTTTAGCAACAGTGTTTAGTTCCAGTGGTTATC
AAGGCGAAACGGATCTCAACGCTGCCATCACCGAAGCAGGAAAGACTTACGAAGAAATTGCTGGTCTTGTGGCAGAGCAGCCAAAGAAAGATCTTCATTTCCTCATGGAATGTAATCATGAATATAAA
GGCTTCCTTGGCTGCTTCCCTGATATTATCGGCGCCCACAAGGGAGCAATAGAAAAAGTGAAAGAAAGTGATAAACTGGTTGCAACTAGTAAAATCACCCCCCAGGACAAACAGAACATGGTGAAGCG
GGTTGGCACTATGTCTTATGCGTTGCAAGCTGAGATGAATCACTTCCATAGCAACCGGATCTATGACTACAACAGTGTCATCCGCCTGTACCTGGAGCAACAAGTGCAGTTCTATGAAACAATTGCAG
AAAAGCTGAGGCAGGCCCTCGGCCGCTTCCCAGTCATGTAGACCAGAACAGAAAATGACGAGAACTCCGAAGTGCTTCTTTCTGACTTTGGGCAATGCAATTTAATCTTTTTCCCCCTCTTCTGCAAA
AACAAAAAGGAAAGAACGAACGAAAACCAAAAAAGAAACAGAGTTGCAAAAAACTGCATCTATTTTATTAACAAACCTAAATGAACACATCGGTTACTTAGGGACAGTTGTCTCTGGTTCATTTCCAC
ATCCCTTATTTAAAACAATGGAAATTGTCTCTATTTTTGGAAAGTACTTAAAGTTATCAGAATTTTGAATGGAAAATTAGGGGTTTCCCCCACTGGTATTTTACATAAAATTGTGATTTTTACATCAT
CCGTGATCTTCTGGTTCTTACCCAATGTCAGATGATTACTAATTGCTTTCTTAAAAATATGAAATATGCCGGGATAAAAAATATATATGTTTGTATATTTTTATAACTCTTTTCAGTCCTGTGGGACA
CCTGTCTACTTAGGAAAATCTACATGCCTTTCACGGACATACTTATGACTCCAGTGCTTACGTTTCCAGGAGAGAGGAAACCAAGAGAGGGGCTCCTGGGGCCGCTCCTCACCAGCAGCGGCTCACAG
TCACTGTCCCCCTTCCCCCAGGAACATTGCTGAGCGTCCCCTTCTGTGCAGAGGGCTTGCTCCTTGGCACCCCCTTCCCGGGCTTAGTTCTGGCCAGAAGGAATATACTGGAGAAGTAGGGCTCTGAC
TCTGCTCCCAGGGCTGGGCTGACCCTGGTGCTCTGGAAGGAGTGGTCCCCGGGACAAATGTGCTCCCCGCAGCTCTCACCTCGAAGGGGAGTCTCAGTCTATCCAGTCAGACGTGATGAGAAATGGGT
GTGAGAGCGTAATTTGCCCCTCGCTTCAGAAGGGAGACCAGCGGGCCAGGGCTATTATCTGAAAAGATGAAAAACCCAGCTCAGTAGACCTCTCCGTCCCACCAAATGGAAAAGTTTAGGGACTGATA
TAAGGGTGACAACCTGAATAATGCACAGTGATCCCTAGAGCTTTTATGTTCAAGAAGTACGGAGTGATGTTCCTCGTGACTGCACCCTAAACGTCAGAGTTGTCCTGACCACTAGGACTCCAGTAAAT
GGCAAAAAGCCAGACACCATCTTCACAGACTGTCCGCTTTCCATCTGAACACGCGCTATCTTGCCTGCTGGCGAGCGTGTCCGTCCACAGTTGCCTTACGACAGTACCCACTGCTTTCATTTTCCTGA
CCTACCAATTATAGTATAGAAAATGGAAAGTTTGGGCCCACACAATGAAACCAAAAAATAAGTAGAAGAGGAAATCAGACGAACATGAATATGAGAATTTCTTGTTCTTTAATATCACGGGTTTTGTT
GACGTTTTATAAGTAATTTTCCCTACTTGATTTTTCTTTTATAAAATCTCATAGAACAATGTTTATGATACAGCCATTTAATATATGTACAAATTGTAAAGAATATGTATAAATGTTTTACACAAATG
TAAGAGCATGTAGAAGCCAACATATAAATAAATTGTTAAAAAACTGTACAGTAAATTCTGAAAGCACTTTTTCAAAACA

hide sequence

RefSeq Acc Id:

XM_038465760 ⟹ XP_038321688

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	1	47,440,875 - 47,523,565 (+)	NCBI

RefSeq Acc Id:

XM_038465761 ⟹ XP_038321689

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	1	47,412,288 - 47,523,565 (+)	NCBI

RefSeq Acc Id:

XM_038526429 ⟹ XP_038382357

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	1	47,869,337 - 47,952,026 (+)	NCBI

RefSeq Acc Id:

XM_038526430 ⟹ XP_038382358

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	1	47,840,744 - 47,952,026 (+)	NCBI

RefSeq Acc Id:

XM_038590725 ⟹ XP_038446653

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	1	47,310,628 - 47,393,272 (+)	NCBI

RefSeq Acc Id:

XM_038590726 ⟹ XP_038446654

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	1	47,282,028 - 47,393,272 (+)	NCBI

RefSeq Acc Id:

XM_038654518 ⟹ XP_038510446

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	1	47,561,565 - 47,644,795 (+)	NCBI

RefSeq Acc Id:

XM_038654519 ⟹ XP_038510447

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	1	47,532,216 - 47,644,795 (+)	NCBI


Protein RefSeqs	XP_005615596	(Get FASTA)	NCBI Sequence Viewer
	XP_005615598	(Get FASTA)	NCBI Sequence Viewer
	XP_038321688	(Get FASTA)	NCBI Sequence Viewer
	XP_038321689	(Get FASTA)	NCBI Sequence Viewer
	XP_038382357	(Get FASTA)	NCBI Sequence Viewer
	XP_038382358	(Get FASTA)	NCBI Sequence Viewer
	XP_038446653	(Get FASTA)	NCBI Sequence Viewer
	XP_038446654	(Get FASTA)	NCBI Sequence Viewer
	XP_038510446	(Get FASTA)	NCBI Sequence Viewer
	XP_038510447	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000000887.5
	ENSCAFP00000042947.3
	ENSCAFP00000054197.1
	ENSCAFP00030027334.1
	ENSCAFP00040031837.1
	ENSCAFP00040031911.1
	ENSCAFP00040031997.1
	ENSCAFP00040032217.1
	ENSCAFP00845001149.1
	ENSCAFP00845001171
	ENSCAFP00845001171.1
	ENSCAFP00845001209
	ENSCAFP00845001209.1
	ENSCAFP00845001248.1
	ENSCAFP00845001278.1

RefSeq Acc Id:	XP_005615598 ⟸ XM_005615541
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I3MFU3 (UniProtKB/TrEMBL), A0A8P0P3Q0 (UniProtKB/TrEMBL), A0A8C0T840 (UniProtKB/TrEMBL)
- Sequence:	show sequence MELSLQGTCCLLLTEARVMYDFAAEPGNNELTVNEGEIITITNPDVGGGWLEGRNSKGERGLVPTDYVEILPNDGKDPFSCGNSVADQAFLDSLSASTAQANSSAANSNNQVSSSNDPWSAWNASTSG NWDSTDGWGAKPEGAAAQRNTSNNWDTAFGHPQAYQGPATGDDDEWDEDWDDPKSAAPYFKDSESAEAGGAQRGNSRAGSSSMKLPLNKFPGFAKPGMEQYLLAKQLAKPKEKIPIIVGDYGPMWVYP TSTFDCVVADPRKGSKMYGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESELFQQFLNFRDEKEWKSGKRKAEKDEL VGVMIFSTMEPEAPDLDLLEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNAAITEAGKTYEEIAGLVAEQPKKDLHFLMECNHEYKGFLGC FPDIIGAHKGAIEKVKESDKLVATSKITPQDKQNMVKRVGTMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALGRFPVM hide sequence

RefSeq Acc Id:	XP_005615596 ⟸ XM_005615539
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0T5W7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARVMYDFAAEPGNNELTVNEGEIITITNPDVGGGWLEGRNSKGERGLVPTDYVEILPNDGKDPFSCGNSVADQAFLDSLSASTAQANSSAANSNNQVDILAQIGCIESLSQSPPSSPSPSPTINKVS SSNDPWSAWNASTSGNWDSTDGWGAKPEGAAAQRNTSNNWDTAFGHPQAYQGPATGDDDEWDEDWDDPKSAAPYFKDSESAEAGGAQRGNSRAGSSSMKLPLNKFPGFAKPGMEQYLLAKQLAKPKEK IPIIVGDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESELFQQFLNFRDE KEWKSGKRKAEKDELVGVMIFSTMEPEAPDLDLLEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNAAITEAGKTYEEIAGLVAEQPKKDLH FLMECNHEYKGFLGCFPDIIGAHKGAIEKVKESDKLVATSKITPQDKQNMVKRVGTMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALGRFPVM hide sequence

Ensembl Acc Id:

ENSCAFP00000060093 ⟸ ENSCAFT00000074988

Ensembl Acc Id:

ENSCAFP00000054197 ⟸ ENSCAFT00000084156

Ensembl Acc Id:

ENSCAFP00000058817 ⟸ ENSCAFT00000073772

Protein Domains

PX SH3

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000000627	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030016963	UniProtKB/TrEMBL
	ENSCAFG00040019784	UniProtKB/TrEMBL
	ENSCAFG00845000878	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000000969.6	UniProtKB/TrEMBL
	ENSCAFT00000046534.3	UniProtKB/TrEMBL
	ENSCAFT00000084156.2	UniProtKB/TrEMBL
	ENSCAFT00030031319.1	UniProtKB/TrEMBL
	ENSCAFT00040036557.1	UniProtKB/TrEMBL
	ENSCAFT00040036639.1	UniProtKB/TrEMBL
	ENSCAFT00040036736.1	UniProtKB/TrEMBL
	ENSCAFT00040036990.1	UniProtKB/TrEMBL
	ENSCAFT00845001468.1	UniProtKB/TrEMBL
	ENSCAFT00845001493	ENTREZGENE
	ENSCAFT00845001493.1	UniProtKB/TrEMBL
	ENSCAFT00845001537	ENTREZGENE
	ENSCAFT00845001537.1	UniProtKB/TrEMBL
	ENSCAFT00845001578.1	UniProtKB/TrEMBL
	ENSCAFT00845001614.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1270.60	UniProtKB/TrEMBL
	3.30.1520.10	UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/TrEMBL
InterPro	AH/BAR_dom_sf	UniProtKB/TrEMBL
	PX_dom	UniProtKB/TrEMBL
	PX_dom_sf	UniProtKB/TrEMBL
	SH3-like_dom_sf	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
	SNX9_BAR	UniProtKB/TrEMBL
	Snx9_fam	UniProtKB/TrEMBL
	SNX9_PX	UniProtKB/TrEMBL
	SNX9_SH3	UniProtKB/TrEMBL
	Sorting_nexin_WASP-bd-dom	UniProtKB/TrEMBL
NCBI Gene	SNX9	ENTREZGENE
PANTHER	PTHR45827:SF2	UniProtKB/TrEMBL
	SORTING NEXIN	UniProtKB/TrEMBL
Pfam	BAR_3_WASP_bdg	UniProtKB/TrEMBL
	PF00787	UniProtKB/TrEMBL
	SH3_2	UniProtKB/TrEMBL
PIRSF	Snx9	UniProtKB/TrEMBL
PROSITE	PS50195	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
SMART	SH3	UniProtKB/TrEMBL
	SM00312	UniProtKB/TrEMBL
Superfamily-SCOP	SSF103657	UniProtKB/TrEMBL
	SSF50044	UniProtKB/TrEMBL
	SSF64268	UniProtKB/TrEMBL
UniProt	A0A8C0T5W7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0T727_CANLF	UniProtKB/TrEMBL
	A0A8C0T840	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0Z2D9_CANLF	UniProtKB/TrEMBL
	A0A8I3MD92_CANLF	UniProtKB/TrEMBL
	A0A8I3MFQ5_CANLF	UniProtKB/TrEMBL
	A0A8I3MFU3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MGT0_CANLF	UniProtKB/TrEMBL
	A0A8I3RPJ5_CANLF	UniProtKB/TrEMBL
	A0A8P0P3Q0	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:46645	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar