SNX9 (sorting nexin 9) - Rat Genome Database

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Gene: SNX9 (sorting nexin 9) Canis lupus familiaris
Analyze
Symbol: SNX9
Name: sorting nexin 9
RGD ID: 12175006
Description: ENCODES a protein that exhibits 1-phosphatidylinositol binding (inferred); Arp2/3 complex binding (inferred); identical protein binding (inferred); INVOLVED IN intracellular protein transport (ortholog); positive regulation of GTPase activity (ortholog); positive regulation of protein kinase activity (ortholog); ASSOCIATED WITH blepharophimosis (ortholog); chromosome 6q24-q25 deletion syndrome (ortholog); FOUND IN cytosol (ortholog); presynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sorting nexin-9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1147,346,214 - 47,457,417 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl147,343,668 - 47,455,937 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha148,191,531 - 48,302,806 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0147,532,216 - 47,644,795 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl147,530,968 - 47,644,779 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1147,412,288 - 47,523,565 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0147,282,028 - 47,393,272 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0147,840,744 - 47,952,026 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SNX9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1147,346,214 - 47,457,417 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl147,343,668 - 47,455,937 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha148,191,531 - 48,302,806 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0147,532,216 - 47,644,795 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl147,530,968 - 47,644,779 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1147,412,288 - 47,523,565 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0147,282,028 - 47,393,272 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0147,840,744 - 47,952,026 (+)NCBIUU_Cfam_GSD_1.0
SNX9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386157,823,246 - 157,945,077 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6157,700,387 - 157,945,077 (+)EnsemblGRCh38hg38GRCh38
GRCh376158,244,278 - 158,366,109 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366158,164,282 - 158,286,097 (+)NCBINCBI36Build 36hg18NCBI36
Build 346158,214,702 - 158,336,518NCBI
Celera6158,893,214 - 159,014,998 (+)NCBICelera
Cytogenetic Map6q25.3NCBI
HuRef6155,760,951 - 155,838,449 (+)NCBIHuRef
CHM1_16158,506,443 - 158,628,331 (+)NCBICHM1_1
T2T-CHM13v2.06159,069,178 - 159,191,298 (+)NCBIT2T-CHM13v2.0
Snx9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39175,891,599 - 5,982,231 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl175,891,604 - 5,982,229 (+)EnsemblGRCm39 Ensembl
GRCm38175,841,324 - 5,931,956 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl175,841,329 - 5,931,954 (+)EnsemblGRCm38mm10GRCm38
MGSCv37175,841,380 - 5,930,711 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36175,797,862 - 5,887,193 (+)NCBIMGSCv36mm8
Celera176,430,109 - 6,474,633 (+)NCBICelera
Cytogenetic Map17A1NCBI
cM Map173.51NCBI
Snx9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8148,827,061 - 48,915,215 (+)NCBIGRCr8
mRatBN7.2146,424,897 - 46,510,096 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl146,423,553 - 46,509,036 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx146,975,856 - 47,059,358 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0152,963,109 - 53,046,607 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0147,051,280 - 47,134,782 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0146,780,142 - 46,826,250 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl146,779,860 - 46,825,830 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0148,084,891 - 48,130,894 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera142,155,821 - 42,201,820 (+)NCBICelera
Cytogenetic Map1q11NCBI
Snx9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554394,421,297 - 4,503,393 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554394,422,385 - 4,503,408 (-)NCBIChiLan1.0ChiLan1.0
SNX9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25177,840,146 - 178,058,536 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16175,841,464 - 175,961,940 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06155,724,026 - 155,844,553 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16157,826,651 - 157,903,363 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6157,824,918 - 157,903,357 (+)Ensemblpanpan1.1panPan2
Snx9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946142,484,264 - 142,552,848 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364899,736,242 - 9,804,874 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364899,736,255 - 9,804,841 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl19,130,338 - 9,239,029 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.119,130,360 - 9,239,023 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2111,253,605 - 11,362,628 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNX9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11385,468,837 - 85,549,351 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1385,468,479 - 85,549,988 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604057,787,751 - 57,911,509 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624785282,512 - 374,378 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624785283,886 - 374,740 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SNX9
1163 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000000969   ⟹   ENSCAFP00000000887
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl147,343,668 - 47,455,937 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000046534   ⟹   ENSCAFP00000042947
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl147,393,757 - 47,455,937 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000073772   ⟹   ENSCAFP00000058817
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl147,345,310 - 47,455,937 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000074988   ⟹   ENSCAFP00000060093
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl147,345,310 - 47,455,937 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000084156   ⟹   ENSCAFP00000054197
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl147,345,310 - 47,455,937 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000089201   ⟹   ENSCAFP00000062280
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl147,345,310 - 47,455,937 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000090485   ⟹   ENSCAFP00000061124
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl147,345,310 - 47,455,937 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845001468   ⟹   ENSCAFP00845001149
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl147,530,968 - 47,644,779 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845001493   ⟹   ENSCAFP00845001171
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl147,530,968 - 47,644,779 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845001537   ⟹   ENSCAFP00845001209
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl147,531,511 - 47,644,779 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845001578   ⟹   ENSCAFP00845001248
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl147,581,116 - 47,644,779 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845001614   ⟹   ENSCAFP00845001278
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl147,581,116 - 47,644,779 (+)Ensembl
RefSeq Acc Id: XM_005615539   ⟹   XP_005615596
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1147,374,752 - 47,457,417 (+)NCBI
Dog10K_Boxer_Tasha148,220,124 - 48,302,806 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005615541   ⟹   XP_005615598
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1147,346,214 - 47,457,417 (+)NCBI
Dog10K_Boxer_Tasha148,191,531 - 48,302,806 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038465760   ⟹   XP_038321688
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1147,440,875 - 47,523,565 (+)NCBI
RefSeq Acc Id: XM_038465761   ⟹   XP_038321689
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1147,412,288 - 47,523,565 (+)NCBI
RefSeq Acc Id: XM_038526429   ⟹   XP_038382357
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0147,869,337 - 47,952,026 (+)NCBI
RefSeq Acc Id: XM_038526430   ⟹   XP_038382358
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0147,840,744 - 47,952,026 (+)NCBI
RefSeq Acc Id: XM_038590725   ⟹   XP_038446653
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0147,310,628 - 47,393,272 (+)NCBI
RefSeq Acc Id: XM_038590726   ⟹   XP_038446654
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0147,282,028 - 47,393,272 (+)NCBI
RefSeq Acc Id: XM_038654518   ⟹   XP_038510446
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0147,561,565 - 47,644,795 (+)NCBI
RefSeq Acc Id: XM_038654519   ⟹   XP_038510447
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0147,532,216 - 47,644,795 (+)NCBI
RefSeq Acc Id: XP_005615598   ⟸   XM_005615541
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MFU3 (UniProtKB/TrEMBL),   A0A8P0P3Q0 (UniProtKB/TrEMBL),   A0A8C0T840 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005615596   ⟸   XM_005615539
- Peptide Label: isoform X1
- UniProtKB: A0A8C0T5W7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000060093   ⟸   ENSCAFT00000074988
Ensembl Acc Id: ENSCAFP00000054197   ⟸   ENSCAFT00000084156
Ensembl Acc Id: ENSCAFP00000058817   ⟸   ENSCAFT00000073772
Ensembl Acc Id: ENSCAFP00000000887   ⟸   ENSCAFT00000000969
Ensembl Acc Id: ENSCAFP00000062280   ⟸   ENSCAFT00000089201
Ensembl Acc Id: ENSCAFP00000061124   ⟸   ENSCAFT00000090485
Ensembl Acc Id: ENSCAFP00000042947   ⟸   ENSCAFT00000046534
RefSeq Acc Id: XP_038321689   ⟸   XM_038465761
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038321688   ⟸   XM_038465760
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038446654   ⟸   XM_038590726
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038446653   ⟸   XM_038590725
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038510447   ⟸   XM_038654519
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MFU3 (UniProtKB/TrEMBL),   A0A8P0P3Q0 (UniProtKB/TrEMBL),   A0A8C0T840 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038510446   ⟸   XM_038654518
- Peptide Label: isoform X1
- UniProtKB: A0A8C0T5W7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038382358   ⟸   XM_038526430
- Peptide Label: isoform X2
- UniProtKB: A0A8C0T840 (UniProtKB/TrEMBL),   A0A8I3MFU3 (UniProtKB/TrEMBL),   A0A8P0P3Q0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038382357   ⟸   XM_038526429
- Peptide Label: isoform X1
- UniProtKB: A0A8C0T5W7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845001248   ⟸   ENSCAFT00845001578
Ensembl Acc Id: ENSCAFP00845001171   ⟸   ENSCAFT00845001493
Ensembl Acc Id: ENSCAFP00845001209   ⟸   ENSCAFT00845001537
Ensembl Acc Id: ENSCAFP00845001278   ⟸   ENSCAFT00845001614
Ensembl Acc Id: ENSCAFP00845001149   ⟸   ENSCAFT00845001468
Protein Domains
PX   SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000000627 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030016963 UniProtKB/TrEMBL
  ENSCAFG00040019784 UniProtKB/TrEMBL
  ENSCAFG00845000878 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000000969.6 UniProtKB/TrEMBL
  ENSCAFT00000046534.3 UniProtKB/TrEMBL
  ENSCAFT00000084156.2 UniProtKB/TrEMBL
  ENSCAFT00030031319.1 UniProtKB/TrEMBL
  ENSCAFT00040036557.1 UniProtKB/TrEMBL
  ENSCAFT00040036639.1 UniProtKB/TrEMBL
  ENSCAFT00040036736.1 UniProtKB/TrEMBL
  ENSCAFT00040036990.1 UniProtKB/TrEMBL
  ENSCAFT00845001468.1 UniProtKB/TrEMBL
  ENSCAFT00845001493 ENTREZGENE
  ENSCAFT00845001493.1 UniProtKB/TrEMBL
  ENSCAFT00845001537 ENTREZGENE
  ENSCAFT00845001537.1 UniProtKB/TrEMBL
  ENSCAFT00845001578.1 UniProtKB/TrEMBL
  ENSCAFT00845001614.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/TrEMBL
  PX_dom UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  SNX9_BAR UniProtKB/TrEMBL
  Snx9_fam UniProtKB/TrEMBL
  SNX9_PX UniProtKB/TrEMBL
  SNX9_SH3 UniProtKB/TrEMBL
  Sorting_nexin_WASP-bd-dom UniProtKB/TrEMBL
NCBI Gene SNX9 ENTREZGENE
PANTHER PTHR45827:SF2 UniProtKB/TrEMBL
  SORTING NEXIN UniProtKB/TrEMBL
Pfam BAR_3_WASP_bdg UniProtKB/TrEMBL
  PF00787 UniProtKB/TrEMBL
  SH3_2 UniProtKB/TrEMBL
PIRSF Snx9 UniProtKB/TrEMBL
PROSITE PS50195 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART SH3 UniProtKB/TrEMBL
  SM00312 UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
  SSF64268 UniProtKB/TrEMBL
UniProt A0A8C0T5W7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T727_CANLF UniProtKB/TrEMBL
  A0A8C0T840 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z2D9_CANLF UniProtKB/TrEMBL
  A0A8I3MD92_CANLF UniProtKB/TrEMBL
  A0A8I3MFQ5_CANLF UniProtKB/TrEMBL
  A0A8I3MFU3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MGT0_CANLF UniProtKB/TrEMBL
  A0A8I3RPJ5_CANLF UniProtKB/TrEMBL
  A0A8P0P3Q0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:46645 ENTREZGENE