Snx9 (sorting nexin 9) - Rat Genome Database

Name: Snx9
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Snx9 (sorting nexin 9) Mus musculus

Analyze

Symbol:

Snx9

Name:

sorting nexin 9

RGD ID:

1621547

MGI Page

MGI

Description:

Enables phosphatidylinositol binding activity. Involved in positive regulation of actin filament polymerization. Acts upstream of or within intracellular protein transport. Located in cytoplasm and plasma membrane. Colocalizes with cuticular plate. Is expressed in lower jaw molar and upper jaw molar. Orthologous to human SNX9 (sorting nexin 9).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

2700073N08Rik; SD; SDP1; SH3P; SH3PX1; sorting nexin-9; sorting nexin-9-like

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SNX9 (sorting nexin 9)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB
Rattus norvegicus (Norway rat):	Snx9 (sorting nexin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Snx9 (sorting nexin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SNX9 (sorting nexin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SNX9 (sorting nexin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Snx9 (sorting nexin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SNX9 (sorting nexin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SNX9 (sorting nexin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Snx9 (sorting nexin 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SNX9 (sorting nexin 9)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Rattus norvegicus (Norway rat):	Snx9 (sorting nexin 9)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	snx9b (sorting nexin 9b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	snx9a (sorting nexin 9a)	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	lst-4	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	SH3PX1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	snx9	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	5,891,599 - 5,982,231 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	5,891,604 - 5,982,229 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	5,841,324 - 5,931,956 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	5,841,329 - 5,931,954 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	5,841,380 - 5,930,711 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	5,797,862 - 5,887,193 (+)	NCBI		MGSCv36	mm8
Celera	17	6,430,109 - 6,474,633 (+)	NCBI		Celera
Cytogenetic Map	17	A1	NCBI
cM Map	17	3.51	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

blepharophimosis (ISO)

chromosome 6q24-q25 deletion syndrome (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (EXP)

1-chloro-2,4-dinitrobenzene (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4,6-tribromophenol (ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (EXP)

4-(ethoxymethylene)-2-phenyloxazol-5-one (ISO)

aflatoxin B1 (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzoates (ISO)

bisphenol A (ISO)

Bisphenol B (ISO)

caffeine (ISO)

calcitriol (ISO)

CGP 52608 (ISO)

choline (EXP)

copper(II) sulfate (ISO)

coumarin (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

cyclosporin A (EXP,ISO)

dextran sulfate (EXP)

dibutyl phthalate (EXP)

Enterolactone (ISO)

ethanol (ISO)

fenthion (EXP)

folic acid (EXP)

FR900359 (ISO)

inulin (EXP)

ivermectin (ISO)

L-methionine (EXP)

menadione (ISO)

methidathion (EXP)

nickel sulfate (ISO)

nimesulide (ISO)

oxaliplatin (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (EXP)

phenobarbital (ISO)

pirinixic acid (EXP)

potassium chromate (ISO)

potassium dichromate (ISO)

pyrogallol (EXP)

rac-lactic acid (ISO)

serpentine asbestos (ISO)

sodium arsenite (EXP)

Soman (ISO)

testosterone (EXP)

thimerosal (ISO)

topotecan (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell division (IEA)

cleavage furrow formation (IBA,ISO)

endocytosis (IBA,ISO)

endosomal transport (IBA,ISO)

intracellular protein transport (IMP,ISO)

lipid tube assembly (ISO)

mitotic cell cycle (IEA)

mitotic cytokinesis (ISO)

plasma membrane tubulation (IBA,ISO)

positive regulation of actin filament polymerization (IDA)

positive regulation of membrane protein ectodomain proteolysis (ISO)

protein transport (IEA)

protein-containing complex assembly (ISO)

receptor-mediated endocytosis (ISO)

regulation of synaptic vesicle endocytosis (ISO)

Cellular Component

cell projection (IEA)

clathrin-coated pit (ISO)

clathrin-coated vesicle (ISO)

cuticular plate (IDA)

cytoplasm (IDA,ISO)

cytoplasmic vesicle (IBA,ISO)

cytoplasmic vesicle membrane (ISO)

cytosol (ISO)

Golgi apparatus (IEA)

membrane (IEA)

plasma membrane (IBA,IDA,ISO)

presynapse (ISO)

trans-Golgi network (ISO)

Molecular Function

1-phosphatidylinositol binding (ISO)

Arp2/3 complex binding (ISO)

identical protein binding (ISO)

lipid binding (IEA)

phosphatidylinositol binding (IBA,IDA,ISO)

protein binding (IPI)

protein homodimerization activity (ISO)

ubiquitin protein ligase binding (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

no abnormal phenotype detected (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:12520002	PMID:12917015	PMID:14610273	PMID:15489334
PMID:15722415	PMID:15782199	PMID:16141072	PMID:16141073	PMID:17967808	PMID:18799693	PMID:21267068	PMID:21873635	PMID:23437151	PMID:25107275	PMID:27034005	PMID:27655699
PMID:32325033	PMID:32554809	PMID:35449600	PMID:37839992

Genomics

Comparative Map Data

Snx9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	5,891,599 - 5,982,231 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	5,891,604 - 5,982,229 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	5,841,324 - 5,931,956 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	5,841,329 - 5,931,954 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	5,841,380 - 5,930,711 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	5,797,862 - 5,887,193 (+)	NCBI		MGSCv36	mm8
Celera	17	6,430,109 - 6,474,633 (+)	NCBI		Celera
Cytogenetic Map	17	A1	NCBI
cM Map	17	3.51	NCBI

SNX9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	157,823,246 - 157,945,077 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	157,700,387 - 157,945,077 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	158,244,278 - 158,366,109 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	158,164,282 - 158,286,097 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	158,214,702 - 158,336,518	NCBI
Celera	6	158,893,214 - 159,014,998 (+)	NCBI		Celera
Cytogenetic Map	6	q25.3	NCBI
HuRef	6	155,760,951 - 155,838,449 (+)	NCBI		HuRef
CHM1_1	6	158,506,443 - 158,628,331 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	159,069,178 - 159,191,298 (+)	NCBI		T2T-CHM13v2.0

Snx9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	48,827,061 - 48,915,215 (+)	NCBI		GRCr8
mRatBN7.2	1	46,424,897 - 46,510,096 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	46,423,553 - 46,509,036 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	46,975,856 - 47,059,358 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	52,963,109 - 53,046,607 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	47,051,280 - 47,134,782 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	46,780,142 - 46,826,250 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	46,779,860 - 46,825,830 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	48,084,891 - 48,130,894 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	1	42,155,821 - 42,201,820 (+)	NCBI		Celera
Cytogenetic Map	1	q11	NCBI

Snx9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955439	4,421,297 - 4,503,393 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955439	4,422,385 - 4,503,408 (-)	NCBI	ChiLan1.0	ChiLan1.0

SNX9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	177,840,146 - 178,058,536 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	175,841,464 - 175,961,940 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	155,724,026 - 155,844,553 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	157,826,651 - 157,903,363 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	157,824,918 - 157,903,357 (+)	Ensembl	panpan1.1		panPan2

SNX9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	47,346,214 - 47,457,417 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	47,343,668 - 47,455,937 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	48,191,531 - 48,302,806 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	47,532,216 - 47,644,795 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	47,530,968 - 47,644,779 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	47,412,288 - 47,523,565 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	47,282,028 - 47,393,272 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	47,840,744 - 47,952,026 (+)	NCBI		UU_Cfam_GSD_1.0

Snx9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	142,484,264 - 142,552,848 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936489	9,736,242 - 9,804,874 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936489	9,736,255 - 9,804,841 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SNX9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	9,130,338 - 9,239,029 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	9,130,360 - 9,239,023 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	11,253,605 - 11,362,628 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SNX9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	85,468,837 - 85,549,351 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	85,468,479 - 85,549,988 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	57,787,751 - 57,911,509 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Snx9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624785	282,512 - 374,378 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624785	283,886 - 374,740 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Snx9
3069 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	474
Count of miRNA genes:	300
Interacting mature miRNAs:	320
Transcripts:	ENSMUST00000002436
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357452	Vtbt18_m	vertebral trabecular bone trait 18 (mouse)			Not determined		17	1	20975022	Mouse
1302196	Myaa1_m	modifier of Yaa 1 (mouse)			Not determined		17	1	20975022	Mouse
1357902	Obq19_m	obesity QTL 19 (mouse)			Not determined		17	1	25662076	Mouse
12910982	Pifs2_m	peptide-induced fatal syndrome 2 (mouse)					17	1	26189355	Mouse
1357743	Lith3_m	lithogenic gene 3 (mouse)			Not determined		17	1	26194456	Mouse
1301615	Cfld3_m	cystic fibrosis lung disease 3 (mouse)			Not determined		17	1	27081639	Mouse
1300613	Pcyts4_m	plasmacytoma susceptibility 4 (mouse)			Not determined		17	1	27081639	Mouse
1302100	Circp2_m	circadian photosensitivity 2 (mouse)			Not determined		17	1	29198453	Mouse
12910527	Nrq1a_m	noise-induced hearing loss resistant QTL 1a (mouse)					17	1	29198453	Mouse
12910528	Nrq1_m	noise-induced hearing loss resistant QTL 1 (mouse)					17	1	29198453	Mouse
13524851	Asrq8_m	acoustic startle response 8 (mouse)					17	1	31030170	Mouse
10412276	Leci2_m	leukocyte endothelial cell interactions 2 (mouse)			Not determined		17	3348175	37348299	Mouse
1357680	Idd23_m	insulin dependent diabetes susceptibility 23 (mouse)			Not determined		17	3974890	26401133	Mouse
1300890	Bhr3_m	bronchial hyperresponsiveness 3 (mouse)			Not determined		17	3974890	48866091	Mouse
1301327	Lmr7_m	leishmaniasis resistance 7 (mouse)			Not determined		17	4854752	27715939	Mouse
4141215	Mnic1_m	macronutrient intake, carbohydrate 1 (mouse)			Not determined			4854752	45670266	Mouse
1300706	Alan1_m	alloantigen response 1 (mouse)			Not determined		17	4854752	46469702	Mouse
1357789	Kdnw3_m	kidney weight 3 (mouse)			Not determined		17	4854752	47885665	Mouse
4141272	Tfv1_m	total food volume 1 (mouse)			Not determined			4854752	65637357	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_025664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017317612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030249990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC168063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK004449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK012520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK139802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK149739	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK149849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK155830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK157517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK170339	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK189192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK191492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK194036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK202482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK202748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK202820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK204095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK208099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK208568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK214085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK218282	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC014814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000002436 ⟹ ENSMUSP00000002436

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	5,891,604 - 5,982,229 (+)	Ensembl
GRCm38.p6 Ensembl	17	5,841,329 - 5,931,954 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000231803

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	17	5,891,627 - 5,940,405 (+)	Ensembl
GRCm38.p6 Ensembl	17	5,841,352 - 5,890,130 (+)	Ensembl

RefSeq Acc Id:

NM_025664 ⟹ NP_079940

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	17	5,891,599 - 5,982,231 (+)	NCBI
GRCm38	17	5,841,324 - 5,931,956 (+)	NCBI
MGSCv37	17	5,841,380 - 5,930,711 (+)	RGD
Celera	17	6,430,120 - 6,474,633 (+)	ENTREZGENE
cM Map	17		ENTREZGENE

Sequence:

show sequence

AGCCGGGACTTTCAGGAACTGCAGGCGCGGGCGGCGGCGGGAGTCGCCGAGCCGCGGGGGCCGG
AGCGCCGAGAGCAGGACTGAGGCGGAGCCGCCGCGCCGGGCCGCAGCCACCGAACCGCAGACGG
AGTCGACCTCCCCGCCCGCTTAGGGCCGAAGCTCCGCAGCACGGGAGACCAGCCGGCCCGCCGG
GGCCGGGGAACCGCCCGCCATGGCCACCAAGGCTCGGGTCATGTACGACTTTGCTGCTGAGCCT
GGAAACAATGAGCTGACCGTTACTGAAGGAGAAATCATCACAGTTACAAACCCGAATGTTGGTG
GAGGATGGCTGGAAGGAAAGAACAACAAAGGAGAGCAGGGGCTTGTTCCTACTGACTACGTGGA
AATTTTACCAAACGATGGAAAAGATCCGTTTTCTTGTGGGAATTCAGTAGCCGACCAAGCTTTC
CTCGATTCCCTGACAGCTAGCACAGCTCAAACCAACTCATCTTCTGCCAACAGCAATAACCAGG
TTGGTGGTGGCAATGACCCCTGGACAGCCTGGAATGCTCCCAAACCTGGGAACTGGGACAGCTC
CGATGCCTGGGGCTCCAGGACAGACGGAACTAGCGCTCAGAGGAACAGCAGCGCCAACAACTGG
GACACGGGCTTTGGCCACCCACAGGCCTACCAAGGACCAGCAACTGGTGATGATGACGAATGGG
ATGAAGACTGGGACGACCCCAAGTCCTCCTCACCTTACTTCAAGGATTCAGAACCAGCTGAAGC
AGGGGGCATCCAGCGGGGAAACAGTCGTGCGGGTGCCTCCTCCATGAAGCTGCCCCTTAACAAA
TTTCCTGGATTTGCAAAACCTGGCATGGAGCAGTACTTGTTGGCCAAGCAGCTAGCAAAACCCA
AAGAGAAAATCGCCATCATCGTTGGAGATTATGGCCCTATGTGGGTTTATCCTACCTCTACGTT
TGACTGTGTGGTAGCTGATCCCCGGAAAGGTTCCAAAATGTACGGTCTGAAGAGCTACATTGAG
TATCAGCTAACACCCACTAACACTAACCGATCTGTAAACCACAGATATAAGCACTTTGATTGGT
TATATGAGCGTCTCCTGGTTAAGTTTGGGTCTGCCATTCCGATCCCTTCTCTTCCAGACAAGCA
GGTCACAGGTCGCTTTGAAGAGGAATTTATCAAAATGCGGATGGAGCGGCTCCAGGCCTGGATG
ACCAGGATGTGCCGGCACCCGGTGGTGTCAGAAAGTGAAGTTTTCCAGCAGTTCCTGAATTTCC
GAGATGAGAAGGAATGGAAGACTGGAAAGAGGAAGGCTGAGAAAGACGAACTGGTGGGAGTGAT
GATATTTTCCACCATGGAACCAGAGGCTCCTGACTTGGATTTGATAGAAATAGAACAGAAGTGT
GACGCTGTGGGGAAGTTCACCAAGGCCATGGATGACGGCGTGAAGGAGCTGCTGACGGTGGGGC
AGGAGCACTGGAAGCGCTGCACAGGGCCCTTACCCAAGGAGTATCAGAAGATAGGGAAGGCTCT
GCAGAGCTTAGCGGCAGTGTTCAGCTCCAGCGGTTATCAAGGAGAGACCGACCTTAACGATGCA
ATCACAGAAGCTGGGAAGACGTATGAGGAGATCGCCAGCCTTGTGGCAGAGCAGCCAAAGAAGG
ACCTCCACTTCCTGATGGAGTGCAACCATGAGTACAAAGGCTTTCTCGGCTGCTTCCCGGACAT
CATTGGTGCCCACAAGGGAGCAATAGAAAAAGTGAAAGAAAGTGATAAGCTGGTTGCAACTAGT
AAAATTACTCCCCAAGACAAGCAGACCATGGTGAAGAGAGTTGGCACCATGTCTTACGCTCTGC
AAGCTGAGATGAATCACTTTCACAGTAACCGGATCTATGATTACAACAGTGTCATCCGCCTCTA
CCTGGAGCAGCAAGTGCAGTTCTATGAAACAATCGCAGAAAAGCTGAGGCAGGCCCTCAGCCGC
TTCCCGGTTATGTAAACCAGAATGGAACACAAGAGAACTCCGAAGTGCTTCATTTACCTGGGGC
AATGCGATTCAATTCCCTCCCCTCCCCGCCCCCCATCATAAGAGAGAGAAAAGGAAGAAAACCA
AAAAGAAAGAAGTTGACAAACCCTGTTTTGGTCGTTAGCCACCTACGTGCGCTGTTGCCCAGGA
TGGCCTTTCTTGTTCATTTCAGCCTATTAGTTACCCAGTGAAAATGTCTATTTTTGGAAAATAC
TTAAATTTATCAAGATTTTGAATGAAGAAATAGGGGTTCTTCCTCCTGGTATTTTACATAGAAT
CGTAATTTATATATTACCTGTGATCTTCCAGTTCTTACCCAATGTCAGATAATTAATACTAATT
GCTTTCTTAAAAATATGAAAAACGGCAGAATAAAAAGTATATCTTTGTATATTTTTATAACTCT
TTCAGTCCTTTGGGGATCGTTGTCTGTTTGGGGGAGTCTGTACACCCTCACTGGCATAGCTACA
GTTAAGTGCTCCCGGGATAGGGAAATAGAGTCCTCAGATCACCTACACCCTCAAACTTGGTGGT
GGGTAGCCCATCAGAGGTCCCAGTAGGTGGGCACAGCAGGCAAGAAGACCCTGCCTCCCTACTG
CTGCCCAGGTTGGTTCCCTGTGCTGAGGTAAATTCAGCATTCTTTGCACTCCCTCCTAGCTCAT
AGCACAGGTGGAAGCTCCCACCCTCGCACGCACGCTCTCCATCCCTCAGCGGCTGAGAGGAGAG
GAGCTGTGGCCTGGTTTGGAGCAGCAGGCTGGTCAGTATTCTCTCAGAAGCAGAGTTCAGCGCC
TGTTCCCTCCCACAGACTGGGAAAGTTAAGGACTAGAGTAAGTGGGAGGACATGCGGTAGCAAG
CTGGTGACAAGCAGAGAATGGCTCTGTCTGTGACTGTGTCCCAGCCTTCATGACTGGAGAGCAC
AGAGCGCACGCCATCTCCTCCCTGCAGACACAGTGGTCCCCTTCCACAGTTGCCTTATGATGTG
ACCCTCTGCTGCCACTTTCCTGACCTGACGTTATATTATAGAGATGGGAAGTCTGGGCCAACAG
AAATGAATGAAACCAAAAATAAGTAGCTGAGAAAATCCAATGAGCGTGAGCATGACAACTTCCT
GTCCTTGACATCAGGGCTTTGTTAATGTTTTCTAAGTCATTTTTCCCTACCTGACTTTTCTTTT
ATACAATTCCATAGAACAGTGTTTATGATACAGCCATTTAATATATGTACAAATTGTAAAGAAC
ATGTATAAATATTTTACATAAATGTGAGAGCATGTAGAAACCAATATATAAATAAATTGTTTTT
AAAAACTGTA

hide sequence

RefSeq Acc Id:

XM_017317612 ⟹ XP_017173101

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	17	5,916,274 - 5,981,318 (+)	NCBI
GRCm38	17	5,865,988 - 5,931,162 (+)	NCBI

Sequence:

show sequence

GACACATAGTGAGCATGGGAACGCAGACACATAGTGAGTATGGGAACGCAGACACATAGTGAGC
ATGGGAACCAGACACATAGTGAGCATGGGAACCAGACACATAGTGAGCATGGGAACCAGACACA
TAGTGAGCATGGGAATGCAGACACATATGCAAACATGGGAACCAGACACATAGTGAGCATGGGA
ACCAGACACATAGTGAGCATGGGAACCAGACACATAGTGAGCATGGGAACGCAGACACATAGTG
AGCATGGGAACGCAGACACATAGTGAGCATGGGAACCAGACACATAGTGAGCATGGGAACCAGA
CACATAGTGAGCATGGGAACCAGACACATAGTGAGCATGGGAACCAGACACATATGCAAACATG
GGAACGCAGACACATAGTGAGCATGGGAACGCAGACACATAGTGAGCATGGGAACCAGACACAT
AGTGAGCATGGGAACCAGACACATAGTGAGCATGGGAACGCAGACACATATGCAAACATGGGAA
CGCAGACACATAGTGAGCATGGGAACTAGACACATAGTGAGCATGGGAACCAGACACATAGTGA
GCATGGGAACCAGACACATAGTGAGCATGGGAACCAGACACATAGTGAGCATGGGAACGCAGAC
ACATAGTGAGCATGGGAACCAGACACATAGTGAGCATGGGAACCAGACACATAGTGAGCATGGG
AACGCAGACACATAGTGAGCATGGGAACCAGACACATAGTGAGCATGGGAACCAGACACATAGT
GAGCATGGGAACGCAGACACATAGTGAGCATGGGAACCAGACACATAGTGAGCATGGGAACCAG
ACACATAGTGAGCATGGGAACCAGACACATAGTGAGCATGGGAACCAGACACATAGTGAGCATG
GGAACGCAGACACATATGCAAACATGGGAACCAGACACATAGTGAGCATGGGAACCAGACACAT
AGTGAGCATGGGAACCAGACACATAGTGAGCATGGGAACCAGACACATAGTGAGCATGGGAACG
CAGACACATAGTGAGCATGGGAACCAGACACATAGTGAGCATGGGAACGCAGACACATAGTGAG
CATGGGAACCAGACACATAGTGAGCATTGCTGGTGATGAGCTGGAGAGTGTGCAGGTCGTCTGT
GGGAAGGGCATAGGAATGACAAACTTGGAGACATAGAATCCTCCCTATTTATGAGATCTTGCTT
GAACTGGGAAGCTCAGCAGGGGTTAATCAGGTGTAAAGAGGAGTGCCCTGTGATCGAGAGGTGT
GGTGGCAGGCACGTGTGGAAACAAGCAGGAGGTATGTGTGTTTGGGGAACTGAAGTTAGTCCAG
TGAGTCTGGAATCTGTATTTGAGGGTAGGAATGAATGGGACATCCTGGCCATAGACATCTGCTG
AGTAGAGTGGGCATATGCCTCCCACCCCTTGCAGGCTGGGAGGCTTGAGACTAAAGAAGGGTGT
TGCTGAGTATTGCTAAGATACTAGGCCAGCCTGCATAGACTGCAGTATGTTCAGCCTGACTAGA
AGGTGGATTAGTAACGTTCAGACATAGCTTATGTAGTGTACGAGTGGTATTGACAGCTCCCAGG
CCCTAGGATGCTGCGGGTAAGAGTTTGAGGAAGCACACATGAGTTTCCTCAAGAGAGGCACACT
CAGTTTGCACAGCAGACGTACATTCTGGCTGCAGGACTGCAGAACGAAGTCTGCGAGAAGCAGC
AGATGCAGGGTAGCCCACACAGCCTTCTGAGGCAGCTGAGGAACTGAGACATGGGATAGAGAGA
AGTGAGCAGAGTTTAGGTAGATCTAGAAAGTAGATTTGCCAAACCTTTCTTAGATGTGAAGAGA
GTGAGAGAAGTGTAAAGCAAACAAAACAAAACAGAAAAGAAAAAAACCCTTGATGCTTTTCTTC
AAGGTGTGTTGTAAGCGAGTGAGCGAGTGTGTTGTGTTGTCAGGTAAGTGAGTGGGGACCCTTG
GGACAATGGTTTTATGGTGGGCACTGAGGAAGTCTCCCTAGGCTGCTTACTACTCTTCCGAAGC
CAGGGCTTAGTGAGAAGGAAGTTAGTTCTGTTCCAGGGCTGAGAAGATGGAGGAACCCCCAAGG
CTCCATTTAGGGAGCAGGACTCAAACTGTTTCTATGGTGAGAGATATCTGCTACAGTGAGGCCA
TGGGTGGGAAGGCCATGCTGAGTGGGATTCTGTTGTCTAGAGTGTCTCCTGTTTTGTTTTGTTT
TTTTTTTTTCCTCAGGCCAGAACAATTTGCCCAACCATATCCTCCCTGGAGCTAGTTCCTATAT
GTTCTTTAAATAGGCATACTCCTTTTCTGCAAATTAGACGTCGCAGCAATGCATGCGCTTTGTG
TGAGCCAAGGCATTGTGTGTTCTGATCCAATCTGAAGGTCGTTGGGTGTTCTGGGCTCAGTAGA
TCTAAGAAAAGATTAGTTAGCCATTAACTTACTATTTATCTAGGTGCAGCTTCTCTGGAGACTT
TCCACTGCTGGCCCAGGGAGAGGATGTAACCTTGCAGAGGGCAGAGGCTCAAGCAGCCTTCAGG
ATGGCTCCCAGTGCAGAGGCCCAGGTTACTACAGGTCCTGGAAGCCTGGCTGAGGCAGGAAGGG
AAAGAGGAAAGGACAAATACAAACATGCTTGAACTTGGAAGTAAACATGGAAGAGCAGAGTCAA
GTGGTCTGGGCATGCTCAGTGGGAGGCACACCTAAGCCCAGCAACCCAGAACCTCAGCTCATTT
GGTTACCTGTGCAACAGAGGGGAGCATTGTCTGGTCTTGAGAGGAGGTCTCTGTAGGGGAGGGA
GAGGGAAGCTGTGCTTGCTAGGTTTTGCACACACTGTCAACACTTGAACTCTGACCCAGGGAAG
GCTCCGAGCCCCACCCTGGGATAGGTGGCGAGGAAGGCCTGCCATTCGCAAGGATGGGAAGCAT
TGGCTCTACCATGTCAAATGGTACACAGTCTCTCAGCACTTCCTCCTCCTCACACAGTCACCTT
AAAGCTCCCTCAGCTCCCACACAGTGTACTGTTCCTGAGGTAGACGCCTTTGAGTCCTGTGCAT
GCAAAGCTGAAAGGCAATTTATAAGATGAATAAAGCTGAGAGACAAGGAAGACGCGTGGATTGA
AAAATAAGCTGGGATTCCTCTGCATAAGGAAGGCCAGTGTGGCCCTCAGGGAGAGCGTAGAGGG
AAGAGAAGCCTGGAGAATGTGGTGTTACAGTGTGGGCCGTTCCCAAGGCAAGCCTCCCCTTTGT
TGGTGTAAAGTAACTGGTTAAAGGAAGCAAGAACACAGTTTACTTTGAGCCAAGTGTGAATGGC
TATGACCGGGGAACATGGAGTCAAGTTATCCCGAACGACATATTCTATTCTGCCTTCGCTGTGG
AAAAGGCTAAGTGCACTTTTTTGATCACAGAACAAAGGAAAGTCAAACATCAATGCATTTTCAA
ATTATGTTGTTGGCAGGTAGCCACAGCAAAGCTGGAGGGTCCCTTCTGTAGGTTTCAGGAGTTA
GGGTGTCTTCGGCCTCCACAGTGATATCCTTGGAGCGGTTTGCCTAGTAATCATGAGAGCCTTA
GGTCTGACCCAGAAGTCAAGGTAATCAGCCCAGGATAATTCCTCTGTGACCCACGTTCCTTCTC
TCCACACTCAGGACTCCAGTCAGTGAAAGGTCAGTCTGCAGGCCCTCCCTTCACTAAGTCAGCT
GCTTCAGGAGACCTCAGTTCACACTGAGAAGGGGGTGGTGAGAGGAACTGCAAACTAGAGGAAG
GTGTGTGTGCAGAAGGCCAGGGAGAGGTCTCTTAAAGGAAGAGGAGGTAGGGATTGTGTCCTCT
GCAGCAGGATATGAGGGAGTCAGAACCTGAAGAACCTGAAGGGTGCACGTCCCTTGGCCAGTTG
GCCAGCTTGACCAAGCAGAATAGACACATGGAGTCTTTCTCTTGAGATTTGACATACTGAGAGT
AAAGAGACAGTCTTGGTCCGAGGATAGCGGGGCAGAGGGTGGTCTGATTGTCTTTTCTTTTTAA
ATTTGTAGTGATGGAGGCAATTGAGTGAGTGGAAAGATTTGATTTATGTCCCCAGAGTTGGTAC
AGAGTTAGCGATGGAGAGGTTAGACCTGGATAGAGGGTCTCTGCGCTCAGGCTCCTCCTTTCTT
CCTTTGCTCTTTTGATGTTGGGGTCAAGATCAAGTCTGTGTTGGCTCCCAGAGCACTAAATCAG
ATTGACGGTGTCTTCCTAGGGAGTGTTAGGGCTCTGCCTCTGCGTTCTCATGCATGACTATTTA
AAGTACTCTACCCTTCCGTAGGGCTTGTGGCAGGCCCCTTTCTTGAGCAGGTCCTACACACTAA
CCTGTGCTAGCTGGCCAGTGCAGTGGCACACAGCTAGTTCTAGAGGAGGAAGAGGATACAGAGA
GCCATTCATTTTCACAGTTGTGCTGTTTATTGATTTGTATGATCTTTAAAAAACAGTGGTAACT
GTAGTATAAAATCTGTCATCTTAACACCTTTTAAGCACGCAGTTCAGGCCATTTAGTATGCTGT
TGTTTGAATCATATTGAGCTGGATATTGGCCAACAGGTACCCATTTGAGTCCTGCTTTTAGTTC
TTTTGGACATAAACTTGCAAATGAAACCGTGTTATTTCTCTGTCTGTCTACGTTGTTACAGATC
AACCCGCCCGCACTTGGCTTTCGCTTTTAAAAGAAGAGTGTCTGAATCTTACCAATTCTCAGCC
CTCGTCATTTTAAACTGACGTGGATGGAAATATAGTTTGTGATGATGAATGTTGAACTTCCACC
ACGGAACAGCGGCCGTGCATTAGGTTCTGATTCTCAGAATCTCCGTCTCCTCTGACTCTGCCAC
ACGCTTCCCTAATCCCTGACCTGTGATTTCTTTCTTGGACATTGAATTGTGCTGCAGTACCAAG
CTGGACTTCGTAATCATGTGGCTCTTGGCTCGGGTCATGTACGACTTTGCTGCTGAGCCTGGAA
ACAATGAGCTGACCGTTACTGAAGGAGAAATCATCACAGTTACAAACCCGAATGTTGGTGGAGG
ATGGCTGGAAGGAAAGAACAACAAAGGAGAGCAGGGGCTTGTTCCTACTGACTACGTGGAAATT
TTACCAAACGATGGAAAAGATCCGTTTTCTTGTGGGAATTCAGTAGCCGACCAAGCTTTCCTCG
ATTCCCTGACAGCTAGCACAGCTCAAACCAACTCATCTTCTGCCAACAGCAATAACCAGGTTGG
TGGTGGCAATGACCCCTGGACAGCCTGGAATGCTCCCAAACCTGGGAACTGGGACAGCTCCGAT
GCCTGGGGCTCCAGGACAGACGGAACTAGCGCTCAGAGGAACAGCAGCGCCAACAACTGGGACA
CGGGCTTTGGCCACCCACAGGCCTACCAAGGACCAGCAACTGGTGATGATGACGAATGGGATGA
AGACTGGGACGACCCCAAGTCCTCCTCACCTTACTTCAAGGATTCAGAACCAGCTGAAGCAGGG
GGCATCCAGCGGGGAAACAGTCGTGCGGGTGCCTCCTCCATGAAGCTGCCCCTTAACAAATTTC
CTGGATTTGCAAAACCTGGCATGGAGCAGTACTTGTTGGCCAAGCAGCTAGCAAAACCCAAAGA
GAAAATCGCCATCATCGTTGGAGATTATGGCCCTATGTGGGTTTATCCTACCTCTACGTTTGAC
TGTGTGGTAGCTGATCCCCGGAAAGGTTCCAAAATGTACGGTCTGAAGAGCTACATTGAGTATC
AGCTAACACCCACTAACACTAACCGATCTGTAAACCACAGATATAAGCACTTTGATTGGTTATA
TGAGCGTCTCCTGGTTAAGTTTGGGTCTGCCATTCCGATCCCTTCTCTTCCAGACAAGCAGGTC
ACAGGTCGCTTTGAAGAGGAATTTATCAAAATGCGGATGGAGCGGCTCCAGGCCTGGATGACCA
GGATGTGCCGGCACCCGGTGGTGTCAGAAAGTGAAGTTTTCCAGCAGTTCCTGAATTTCCGAGA
TGAGAAGGAATGGAAGACTGGAAAGAGGAAGGCTGAGAAAGACGAACTGGTGGGAGTGATGATA
TTTTCCACCATGGAACCAGAGGCTCCTGACTTGGATTTGATAGAAATAGAACAGAAGTGTGACG
CTGTGGGGAAGTTCACCAAGGCCATGGATGACGGCGTGAAGGAGCTGCTGACGGTGGGGCAGGA
GCACTGGAAGCGCTGCACAGGGCCCTTACCCAAGGAGTATCAGAAGATAGGGAAGGCTCTGCAG
AGCTTAGCGGCAGTGTTCAGCTCCAGCGGTTATCAAGGAGAGACCGACCTTAACGATGCAATCA
CAGAAGCTGGGAAGACGTATGAGGAGATCGCCAGCCTTGTGGCAGAGCAGCCAAAGAAGGACCT
CCACTTCCTGATGGAGTGCAACCATGAGTACAAAGGCTTTCTCGGCTGCTTCCCGGACATCATT
GGTGCCCACAAGGGAGCAATAGAAAAAGTGAAAGAAAGTGATAAGCTGGTTGCAACTAGTAAAA
TTACTCCCCAAGACAAGCAGACCATGGTGAAGAGAGTTGGCACCATGTCTTACGCTCTGCAAGC
TGAGATGAATCACTTTCACAGTAACCGGATCTATGATTACAACAGTGTCATCCGCCTCTACCTG
GAGCAGCAAGTGCAGTTCTATGAAACAATCGCAGAAAAGCTGAGGCAGGCCCTCAGCCGCTTCC
CGGTTATGTAAACCAGAATGGAACACAAGAGAACTCCGAAGTGCTTCATTTACCTGGGGCAATG
CGATTCAATTCCCTCCCCTCCCCGCCCCCCATCATAAGAGAGAGAAAAGGAAGAAAACCAAAAA
GAAAGAAGTTGACAAACCCTGTTTTGGTCGTTAGCCACCTACGTGCGCTGTTGCCCAGGATGGC
CTTTCTTGTTCATTTCAGCCTATTAGTTACCCAGTGAAAATGTCTATTTTTGGAAAATACTTAA
ATTTATCAAGATTTTGAATGAAGAAATAGGGGTTCTTCCTCCTGGTATTTTACATAGAATCGTA
ATTTATATATTACCTGTGATCTTCCAGTTCTTACCCAATGTCAGATAATTAATACTAATTGCTT
TCTTAAAAATATGAAAAACGGCAGAATAAAAAGTATATCTTTGTATATTTTTA

hide sequence

RefSeq Acc Id:

XM_030249990 ⟹ XP_030105850

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	17	5,949,423 - 5,981,318 (+)	NCBI
GRCm38	17	5,899,146 - 5,931,162 (+)	NCBI

Sequence:

show sequence

TGTTGTCCTCAGGCCTACCAAGGACCAGCAACTGGTGATGATGACGAATGGGATGAAGACTGGG
ACGACCCCAAGTCCTCCTCACCTTACTTCAAGGATTCAGAACCAGCTGAAGCAGGGGGCATCCA
GCGGGGAAACAGTCGTGCGGGTGCCTCCTCCATGAAGCTGCCCCTTAACAAATTTCCTGGATTT
GCAAAACCTGGCATGGAGCAGTACTTGTTGGCCAAGCAGCTAGCAAAACCCAAAGAGAAAATCG
CCATCATCGTTGGAGATTATGGCCCTATGTGGGTTTATCCTACCTCTACGTTTGACTGTGTGGT
AGCTGATCCCCGGAAAGGTTCCAAAATGTACGGTCTGAAGAGCTACATTGAGTATCAGCTAACA
CCCACTAACACTAACCGATCTGTAAACCACAGATATAAGCACTTTGATTGGTTATATGAGCGTC
TCCTGGTTAAGTTTGGGTCTGCCATTCCGATCCCTTCTCTTCCAGACAAGCAGGTCACAGGTCG
CTTTGAAGAGGAATTTATCAAAATGCGGATGGAGCGGCTCCAGGCCTGGATGACCAGGATGTGC
CGGCACCCGGTGGTGTCAGAAAGTGAAGTTTTCCAGCAGTTCCTGAATTTCCGAGATGAGAAGG
AATGGAAGACTGGAAAGAGGAAGGCTGAGAAAGACGAACTGGTGGGAGTGATGATATTTTCCAC
CATGGAACCAGAGGCTCCTGACTTGGATTTGATAGAAATAGAACAGAAGTGTGACGCTGTGGGG
AAGTTCACCAAGGCCATGGATGACGGCGTGAAGGAGCTGCTGACGGTGGGGCAGGAGCACTGGA
AGCGCTGCACAGGGCCCTTACCCAAGGAGTATCAGAAGATAGGGAAGGCTCTGCAGAGCTTAGC
GGCAGTGTTCAGCTCCAGCGGTTATCAAGGAGAGACCGACCTTAACGATGCAATCACAGAAGCT
GGGAAGACGTATGAGGAGATCGCCAGCCTTGTGGCAGAGCAGCCAAAGAAGGACCTCCACTTCC
TGATGGAGTGCAACCATGAGTACAAAGGCTTTCTCGGCTGCTTCCCGGACATCATTGGTGCCCA
CAAGGGAGCAATAGAAAAAGTGAAAGAAAGTGATAAGCTGGTTGCAACTAGTAAAATTACTCCC
CAAGACAAGCAGACCATGGTGAAGAGAGTTGGCACCATGTCTTACGCTCTGCAAGCTGAGATGA
ATCACTTTCACAGTAACCGGATCTATGATTACAACAGTGTCATCCGCCTCTACCTGGAGCAGCA
AGTGCAGTTCTATGAAACAATCGCAGAAAAGCTGAGGCAGGCCCTCAGCCGCTTCCCGGTTATG
TAAACCAGAATGGAACACAAGAGAACTCCGAAGTGCTTCATTTACCTGGGGCAATGCGATTCAA
TTCCCTCCCCTCCCCGCCCCCCATCATAAGAGAGAGAAAAGGAAGAAAACCAAAAAGAAAGAAG
TTGACAAACCCTGTTTTGGTCGTTAGCCACCTACGTGCGCTGTTGCCCAGGATGGCCTTTCTTG
TTCATTTCAGCCTATTAGTTACCCAGTGAAAATGTCTATTTTTGGAAAATACTTAAATTTATCA
AGATTTTGAATGAAGAAATAGGGGTTCTTCCTCCTGGTATTTTACATAGAATCGTAATTTATAT
ATTACCTGTGATCTTCCAGTTCTTACCCAATGTCAGATAATTAATACTAATTGCTTTCTTAAAA
ATATGAAAAACGGCAGAATAAAAAGTATATCTTTGTATATTTTTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_079940	(Get FASTA)	NCBI Sequence Viewer
	XP_017173101	(Get FASTA)	NCBI Sequence Viewer
	XP_030105850	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH14814	(Get FASTA)	NCBI Sequence Viewer
	BAB28292	(Get FASTA)	NCBI Sequence Viewer
	BAE29121	(Get FASTA)	NCBI Sequence Viewer
	BAE33453	(Get FASTA)	NCBI Sequence Viewer
	BAE34110	(Get FASTA)	NCBI Sequence Viewer
	BAE41729	(Get FASTA)	NCBI Sequence Viewer
	EDL01663	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000002436
	ENSMUSP00000002436.10
GenBank Protein	Q91VH2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_079940 ⟸ NM_025664

- UniProtKB:

Q91VH2 (UniProtKB/Swiss-Prot), Q3U1P2 (UniProtKB/TrEMBL), Q3TZU7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDG
KDPFSCGNSVADQAFLDSLTASTAQTNSSSANSNNQVGGGNDPWTAWNAPKPGNWDSSDAWGSR
TDGTSAQRNSSANNWDTGFGHPQAYQGPATGDDDEWDEDWDDPKSSSPYFKDSEPAEAGGIQRG
NSRAGASSMKLPLNKFPGFAKPGMEQYLLAKQLAKPKEKIAIIVGDYGPMWVYPTSTFDCVVAD
PRKGSKMYGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFE
EEFIKMRMERLQAWMTRMCRHPVVSESEVFQQFLNFRDEKEWKTGKRKAEKDELVGVMIFSTME
PEAPDLDLIEIEQKCDAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLAAV
FSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGAHKG
AIEKVKESDKLVATSKITPQDKQTMVKRVGTMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQ
FYETIAEKLRQALSRFPVM

hide sequence

RefSeq Acc Id:	XP_017173101 ⟸ XM_017317612
- Peptide Label:	isoform X1
- UniProtKB:	Q3TZU7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWLLARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDG KDPFSCGNSVADQAFLDSLTASTAQTNSSSANSNNQVGGGNDPWTAWNAPKPGNWDSSDAWGSR TDGTSAQRNSSANNWDTGFGHPQAYQGPATGDDDEWDEDWDDPKSSSPYFKDSEPAEAGGIQRG NSRAGASSMKLPLNKFPGFAKPGMEQYLLAKQLAKPKEKIAIIVGDYGPMWVYPTSTFDCVVAD PRKGSKMYGLKSYIEYQLTPTNTNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTGRFE EEFIKMRMERLQAWMTRMCRHPVVSESEVFQQFLNFRDEKEWKTGKRKAEKDELVGVMIFSTME PEAPDLDLIEIEQKCDAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLAAV FSSSGYQGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGAHKG AIEKVKESDKLVATSKITPQDKQTMVKRVGTMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQ FYETIAEKLRQALSRFPVM hide sequence

RefSeq Acc Id:	XP_030105850 ⟸ XM_030249990
- Peptide Label:	isoform X2
- UniProtKB:	Q9CZK0 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSMUSP00000002436 ⟸ ENSMUST00000002436

Protein Domains

BAR PX SH3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q91VH2-F1-model_v2	AlphaFold	Q91VH2	1-595	view protein structure

Promoters

RGD ID:

6828705

Promoter ID:

MM_KWN:21947

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, Kidney, Lung, Spleen

Transcripts:

NM_025664

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	17	5,841,076 - 5,841,827 (+)	MPROMDB

RGD ID:

13674626

Promoter ID:

EPDNEW_M21463

Type:

initiation region

Name:

Snx9_1

Description:

Mus musculus sorting nexin 9 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	17	5,841,365 - 5,841,425	EPDNEW

RGD ID:

6828704

Promoter ID:

MM_KWN:21949

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, Kidney

Transcripts:

ENSMUST00000002436

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	17	5,886,726 - 5,887,226 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1913866	AgrOrtholog
Ensembl Genes	ENSMUSG00000002365	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000002436	ENTREZGENE
	ENSMUST00000002436.11	UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.1270.60	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.30.1520.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	AH/BAR_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Phox	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PX_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3_domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SNX9_BAR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Snx9_fam	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SNX9_PX	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SNX9_SH3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Sorting_nexin_WASP-bd-dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:66616	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:1913866	ENTREZGENE
NCBI Gene	66616	ENTREZGENE
PANTHER	PTHR45827:SF2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SORTING NEXIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	BAR_3_WASP_bdg	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PF00787	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Snx9	PhenoGen
PIRSF	Snx9	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	PS50195	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SH3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	SH3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SM00312	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF103657	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF50044	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF64268	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	Q3TZU7	ENTREZGENE, UniProtKB/TrEMBL
	Q3U1P2	ENTREZGENE, UniProtKB/TrEMBL
	Q91VH2	ENTREZGENE
	Q9CZK0	ENTREZGENE, UniProtKB/TrEMBL
	SNX9_MOUSE	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Mammalian Phenotype