LOC491788 (small ubiquitin-related modifier 1-like)

Gene: LOC491788 (small ubiquitin-related modifier 1-like) Canis lupus familiaris

Analyze

Symbol:

LOC491788

Name:

small ubiquitin-related modifier 1-like

RGD ID:

12164803

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN PML body organization (ortholog); FOUND IN nucleus (inferred); PML body (inferred)

Type:

protein-coding

RefSeq Status:

VALIDATED

RGD Orthologs

Human

Pig

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	21,742,066 - 21,743,108 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
ROS_Cfam_1.0	X	21,703,457 - 21,704,499 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	X	21,734,661 - 21,735,701 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	21,774,100 - 21,775,142 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	21,827,942 - 21,828,984 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

PML body organization (ISO)

protein sumoylation (IEA)

Cellular Component

nucleus (IEA)

PML body (IEA)

Molecular Function

identical protein binding (ISO)

protein binding (ISO)

protein tag activity (IEA)

ubiquitin-like protein ligase binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

LOC491788
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	21,742,066 - 21,743,108 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
ROS_Cfam_1.0	X	21,703,457 - 21,704,499 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	X	21,734,661 - 21,735,701 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	21,774,100 - 21,775,142 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	21,827,942 - 21,828,984 (+)	NCBI		UU_Cfam_GSD_1.0

SUMO1P1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	53,874,498 - 53,875,709 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	53,875,252 - 53,875,557 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	52,491,037 - 52,492,248 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	51,924,557 - 51,925,658 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	20	49,195,682 - 49,196,894 (-)	NCBI		Celera
Cytogenetic Map	20	q13.2	NCBI
HuRef	20	49,237,888 - 49,239,100 (-)	NCBI		HuRef
CHM1_1	20	52,394,156 - 52,395,368 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	55,647,868 - 55,649,080 (-)	NCBI		T2T-CHM13v2.0

LOC100737265
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	1	107,108,527 - 107,109,516 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	117,837,666 - 117,838,729 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Variants

Variants in LOC491788
9 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001252262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BM538246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CX988382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DN345621	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

NM_001252262 ⟹ NP_001239191

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	X	21,742,066 - 21,743,108 (+)	NCBI
ROS_Cfam_1.0	X	21,703,457 - 21,704,499 (+)	NCBI
UMICH_Zoey_3.1	X	21,734,661 - 21,735,701 (+)	NCBI
UNSW_CanFamBas_1.0	X	21,774,100 - 21,775,142 (+)	NCBI
UU_Cfam_GSD_1.0	X	21,827,942 - 21,828,984 (+)	NCBI

Sequence:

show sequence

GGCCGGGCGTCGTGCTGGTCGTGCAGAGAGGAGTCCGCAAGGTGCCGCACCGAGGGTCGTGCCT
GCCGAGGGGGACCCTGGGCGAAGCCCACCGCCGCGATGGAGGTCCAGGAGGCAAGCTCTTCCAA
CAAGGACTTGGGGGGCAAGAAGGAAGGAAAATACATCAAACTCACAGTCGTTGGACAAGACAAC
AGTGAGGTTCACTTCAAACTGAAAATGACGACCCATCTGAAGAAACTCAAAGAGTTGTACTGTC
AAAGGGTGGGTGTTACCATCAATACGCTCAGGTTTCTCTTTGATGGGCAGAGAATCGCTGATAA
TCACACCCCAAAAGAACTGAACATGGAGGAAGATGATGTGATCCGAGTCTACCAGGAACAAGTA
GAGGATCACGCAAGGATTTAGAAATTCTTCTGGCTTTTCCCCCTTCCCCTCAACACTCTTCTAT
TTCTAAATATAGTTCTTTAATAATGTGGTGTTCACGATGGAATTAAAAACGGACACCACATCCC
TTTAAAGGTATCTGATAATTTGAATTCTAGTGCCCAATATTCATGATTATTCGTTTTCATTGTG
CTGGTTTTTGGTCATCAAACCTTAGCTCCTGTTATATCGGCCTCGCCTTTTTAACAATCACCTA
TGTGCACAGAGAGGCCACTCTTTCCAGGGCTGTGCATTTTCAGGCCGGTGATAAAGACGATCCA
CCGATGCCAATGATCAAAATGACTTTCCAACTGGCCCTGAAGTTCTGGCATGTGACTACTTCAC
TCCTGGACTATGATTCTCAGTGGGAGATGGAAGTTTTTCAGAGAACTGAATGGTGAAAAATGAC
TTTTCCTTAACTTGAAGCTACTTTTAGCATTTGAGTGTCTGGACCAAAGGAAGACAACTATCAG
GCTGAAGTTGAGATAACCGTGATCGTGAGAATAATGACTAACTCCAAAGATGGCTTTGCTAAGG
AGAGAACATCTTAAAAATCTTACCAGAATCCCCAGAAAGTCCTAATTTTCATTAGCAGTTAATA
AAGATACTCATGCAGAACT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001239191	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00030031359.1
	ENSCAFP00845043152
	ENSCAFP00845043152.1

RefSeq Acc Id:	NP_001239191 ⟸ NM_001252262
- UniProtKB:	A0A8C0NRZ0 (UniProtKB/TrEMBL), A0A8I3S7V3 (UniProtKB/TrEMBL), A0A8C0QWD2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEVQEASSSNKDLGGKKEGKYIKLTVVGQDNSEVHFKLKMTTHLKKLKELYCQRVGVTINTLRF LFDGQRIADNHTPKELNMEEDDVIRVYQEQVEDHARI hide sequence

Protein Domains

Ubiquitin-like

Promoters

RGD ID:

13689285

Promoter ID:

EPDNEW_C7353

Type:

single initiation site

Name:

ENSCAFT00000021539_1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	X	21,742,055 - 21,742,115	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00030019590	UniProtKB/TrEMBL
	ENSCAFG00845030872	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00030035953.1	UniProtKB/TrEMBL
	ENSCAFT00845054870	ENTREZGENE
	ENSCAFT00845054870.1	UniProtKB/TrEMBL
InterPro	Rad60/SUMO-like_dom	UniProtKB/TrEMBL
	SUMO1_Ubl	UniProtKB/TrEMBL
	Ubiquitin-like_dom	UniProtKB/TrEMBL
	Ubiquitin-like_domsf	UniProtKB/TrEMBL
NCBI Gene	LOC491788	ENTREZGENE
PANTHER	SMALL UBIQUITIN-RELATED MODIFIER	UniProtKB/TrEMBL
	SMALL UBIQUITIN-RELATED MODIFIER 1	UniProtKB/TrEMBL
Pfam	Rad60-SLD	UniProtKB/TrEMBL
PROSITE	UBIQUITIN_2	UniProtKB/TrEMBL
SMART	UBQ	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54236	UniProtKB/TrEMBL
UniProt	A0A8C0NRZ0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0QWD2	ENTREZGENE
	A0A8I3S7V3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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