LOC100737265 (small ubiquitin-related modifier 1-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC100737265 (small ubiquitin-related modifier 1-like) Sus scrofa
Analyze
Symbol: LOC100737265
Name: small ubiquitin-related modifier 1-like
RGD ID: 13891809
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN PML body organization (ortholog); FOUND IN nucleus (inferred); PML body (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11107,108,527 - 107,109,516 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21117,837,666 - 117,838,729 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)
PML body  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC100737265
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11107,108,527 - 107,109,516 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21117,837,666 - 117,838,729 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SUMO1P1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382053,874,498 - 53,875,709 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2053,875,252 - 53,875,557 (-)EnsemblGRCh38hg38GRCh38
GRCh372052,491,037 - 52,492,248 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362051,924,557 - 51,925,658 (-)NCBINCBI36Build 36hg18NCBI36
Celera2049,195,682 - 49,196,894 (-)NCBICelera
Cytogenetic Map20q13.2NCBI
HuRef2049,237,888 - 49,239,100 (-)NCBIHuRef
CHM1_12052,394,156 - 52,395,368 (-)NCBICHM1_1
T2T-CHM13v2.02055,647,868 - 55,649,080 (-)NCBIT2T-CHM13v2.0
LOC491788
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X21,742,066 - 21,743,108 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X21,703,457 - 21,704,499 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X21,734,661 - 21,735,701 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X21,774,100 - 21,775,142 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X21,827,942 - 21,828,984 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in LOC100737265
31 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 3 3 3 5 2 18 2 2 2
Below cutoff 6 1 5 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005659490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005659490   ⟹   XP_005659547
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11107,108,527 - 107,109,516 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005659547   ⟸   XM_005659490
- UniProtKB: A0A287BKM7 (UniProtKB/TrEMBL),   A0A4X1U4N3 (UniProtKB/TrEMBL),   A0A8D0LU58 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Ubiquitin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037998 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005034205 UniProtKB/TrEMBL
  ENSSSCG00025072767 UniProtKB/TrEMBL
  ENSSSCG00035056993 UniProtKB/TrEMBL
  ENSSSCG00045027313 UniProtKB/TrEMBL
  ENSSSCG00050040998 UniProtKB/TrEMBL
  ENSSSCG00060002708 UniProtKB/TrEMBL
  ENSSSCG00065060055 UniProtKB/TrEMBL
  ENSSSCG00070014101 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000056451 ENTREZGENE
  ENSSSCT00000056451.3 UniProtKB/TrEMBL
  ENSSSCT00005054567.1 UniProtKB/TrEMBL
  ENSSSCT00025100093.1 UniProtKB/TrEMBL
  ENSSSCT00035076206.1 UniProtKB/TrEMBL
  ENSSSCT00045046491.1 UniProtKB/TrEMBL
  ENSSSCT00050055547.1 UniProtKB/TrEMBL
  ENSSSCT00060003324.1 UniProtKB/TrEMBL
  ENSSSCT00065082237.1 UniProtKB/TrEMBL
  ENSSSCT00070027614.1 UniProtKB/TrEMBL
InterPro Rad60/SUMO-like_dom UniProtKB/TrEMBL
  SUMO1_Ubl UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/TrEMBL
KEGG Report ssc:100737265 UniProtKB/TrEMBL
NCBI Gene LOC100737265 ENTREZGENE
PANTHER SMALL UBIQUITIN-RELATED MODIFIER UniProtKB/TrEMBL
  SMALL UBIQUITIN-RELATED MODIFIER 1 UniProtKB/TrEMBL
Pfam Rad60-SLD UniProtKB/TrEMBL
PROSITE UBIQUITIN_2 UniProtKB/TrEMBL
SMART UBQ UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt A0A287BKM7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U4N3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LU58 ENTREZGENE, UniProtKB/TrEMBL